Wall clock time and date at job start Mon Mar 30 2020 06:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36080 * 126.39189 * 2 1 4 4 C 1.38573 * 106.91693 * 180.25267 * 3 2 1 5 5 C 1.48224 * 125.96705 * 179.75429 * 4 3 2 6 6 C 1.39464 * 120.13289 * 359.73823 * 5 4 3 7 7 C 1.37960 * 119.87696 * 179.67482 * 6 5 4 8 8 C 1.38386 * 120.15963 * 0.61226 * 7 6 5 9 9 C 1.38307 * 120.27647 * 359.68395 * 8 7 6 10 10 C 1.38129 * 120.11760 * 359.97438 * 9 8 7 11 11 Cl 1.73607 * 120.08016 * 180.02562 * 10 9 8 12 12 N 1.33558 * 108.07125 * 359.74213 * 4 3 2 13 13 C 1.32822 * 109.19500 * 359.97438 * 12 4 3 14 14 C 1.39947 * 125.70266 * 179.97438 * 13 12 4 15 15 H 1.08002 * 119.99898 * 180.02562 * 14 13 12 16 16 C 1.40163 * 119.99516 * 0.30543 * 14 13 12 17 17 N 1.30724 * 120.00555 * 359.72001 * 16 14 13 18 18 Si 1.86801 * 119.99705 * 179.72098 * 16 14 13 19 19 H 1.48504 * 109.47209 * 90.00100 * 18 16 14 20 20 H 1.48506 * 109.47294 * 209.99947 * 18 16 14 21 21 H 1.48501 * 109.47275 * 329.99850 * 18 16 14 22 22 H 1.09002 * 109.47482 * 270.19364 * 1 2 3 23 23 H 1.09007 * 109.47429 * 30.18930 * 1 2 3 24 24 H 1.08998 * 109.47600 * 150.18932 * 1 2 3 25 25 H 1.07995 * 126.53660 * 359.97438 * 3 2 1 26 26 H 1.07992 * 120.05977 * 359.96200 * 6 5 4 27 27 H 1.07998 * 119.92043 * 180.31225 * 7 6 5 28 28 H 1.08006 * 119.86362 * 179.69650 * 8 7 6 29 29 H 1.08007 * 119.93841 * 180.02562 * 9 8 7 30 30 H 0.96995 * 120.00241 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2723 1.0954 0.0000 4 6 3.5787 0.6334 -0.0058 5 6 4.7994 1.4742 -0.0131 6 6 4.6918 2.8647 -0.0201 7 6 5.8314 3.6422 -0.0201 8 6 7.0801 3.0457 -0.0259 9 6 7.1944 1.6673 -0.0253 10 6 6.0609 0.8779 -0.0182 11 17 6.2056 -0.8522 -0.0167 12 7 3.5460 -0.7017 -0.0035 13 6 2.2814 -1.1076 0.0041 14 6 1.8510 -2.4392 0.0081 15 1 0.7949 -2.6654 0.0139 16 6 2.7906 -3.4793 0.0105 17 7 4.0688 -3.2056 0.0035 18 14 2.2162 -5.2568 0.0238 19 1 2.0581 -5.7363 -1.3728 20 1 3.2206 -6.0964 0.7247 21 1 0.9132 -5.3507 0.7299 22 1 -0.3634 0.0035 1.0277 23 1 -0.3634 0.8883 -0.5168 24 1 -0.3634 -0.8916 -0.5109 25 1 1.9552 2.1278 -0.0004 26 1 3.7181 3.3319 -0.0208 27 1 5.7488 4.7190 -0.0203 28 1 7.9691 3.6590 -0.0308 29 1 8.1717 1.2075 -0.0294 30 1 4.7190 -3.9253 0.0048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259490008.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:33 Heat of formation + Delta-G solvation = 77.573905 kcal Electronic energy + Delta-G solvation = -16885.237595 eV Core-core repulsion = 14093.282367 eV Total energy + Delta-G solvation = -2791.955228 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.92938 -38.28949 -35.09901 -33.33610 -32.80418 -30.64652 -29.96084 -28.24269 -25.97502 -24.68467 -22.29324 -21.80384 -19.46359 -18.96769 -16.83482 -16.39773 -15.35591 -14.65965 -14.54961 -14.32953 -14.21237 -13.30842 -12.97643 -12.83544 -12.56061 -12.30411 -11.88412 -11.67153 -11.15554 -11.11173 -10.93378 -10.72303 -10.43279 -10.40008 -10.09961 -9.54465 -9.26269 -8.81942 -8.08270 -7.65840 -7.55997 -6.75675 -6.34357 -4.23463 1.67411 1.81216 3.06718 3.18107 3.19703 3.37895 3.57090 4.03605 4.22395 4.36828 4.90443 5.32692 5.35007 5.41941 5.62464 5.66761 5.84630 5.91487 6.00785 6.12277 6.15927 6.28438 6.45886 6.67525 6.81258 6.88637 7.21338 7.28459 7.37026 7.61020 7.99593 8.21334 8.48209 8.98331 9.28709 10.19925 10.55842 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.007716 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.435396 B = 3627.739099 C = 4801.017519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.504 5.504 3 C -0.137 4.137 4 C 0.023 3.977 5 C 0.039 3.961 6 C -0.118 4.118 7 C -0.125 4.125 8 C -0.136 4.136 9 C -0.122 4.122 10 C -0.036 4.036 11 Cl -0.004 7.004 12 N -0.473 5.473 13 C 0.370 3.630 14 C -0.463 4.463 15 H 0.075 0.925 16 C 0.084 3.916 17 N -0.730 5.730 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.266 1.266 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.140 0.860 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.171 7.389 -0.106 7.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.192 5.192 3 C -0.270 4.270 4 C -0.109 4.109 5 C 0.036 3.964 6 C -0.138 4.138 7 C -0.143 4.143 8 C -0.155 4.155 9 C -0.141 4.141 10 C -0.064 4.064 11 Cl 0.026 6.974 12 N -0.193 5.193 13 C 0.127 3.873 14 C -0.502 4.502 15 H 0.094 0.906 16 C -0.140 4.140 17 N -0.355 5.355 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.191 1.191 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.157 0.843 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.942 6.651 -0.109 6.929 hybrid contribution -1.105 -0.236 0.021 1.130 sum 0.837 6.415 -0.087 6.470 Atomic orbital electron populations 1.21482 0.79896 1.02204 1.01092 1.45350 1.05230 1.07102 1.61521 1.22061 0.91036 0.90803 1.23131 1.19363 0.88940 0.92925 1.09676 1.18115 0.90569 0.91717 0.95953 1.21036 0.98506 0.92282 1.01951 1.20925 0.92477 0.99222 1.01675 1.20910 0.97302 0.94020 1.03284 1.20973 0.97291 0.93570 1.02238 1.21325 0.93503 0.88690 1.02887 1.98483 1.97886 1.05111 1.95922 1.71761 1.15922 1.05303 1.26287 1.20410 0.83379 0.87521 0.96013 1.18020 0.93920 0.86964 1.51310 0.90638 1.25608 0.94482 1.00116 0.93770 1.70051 1.00821 1.32835 1.31775 0.86374 0.79255 0.82457 0.78804 1.19824 1.20413 1.19072 0.93093 0.92270 0.90672 0.84271 0.85992 0.86474 0.86405 0.85968 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 10.93 59.84 0.65 2.39 16 2 N -0.50 -11.80 3.20 -122.81 -0.39 -12.19 16 3 C -0.14 -3.10 11.01 -15.54 -0.17 -3.27 16 4 C 0.02 0.57 6.83 -82.89 -0.57 0.01 16 5 C 0.04 0.84 5.88 -104.85 -0.62 0.22 16 6 C -0.12 -2.09 9.57 -39.23 -0.38 -2.46 16 7 C -0.12 -1.86 10.03 -39.63 -0.40 -2.26 16 8 C -0.14 -2.03 10.04 -39.50 -0.40 -2.42 16 9 C -0.12 -2.09 9.82 -39.60 -0.39 -2.48 16 10 C -0.04 -0.76 6.35 -39.14 -0.25 -1.01 16 11 Cl 0.00 -0.09 25.52 -51.86 -1.32 -1.41 16 12 N -0.47 -13.14 6.67 -9.03 -0.06 -13.20 16 13 C 0.37 10.06 7.41 -155.70 -1.15 8.90 16 14 C -0.46 -12.29 8.98 -38.22 -0.34 -12.63 16 15 H 0.08 1.86 7.12 -52.49 -0.37 1.49 16 16 C 0.08 2.18 5.50 -17.30 -0.10 2.08 16 17 N -0.73 -19.71 11.25 55.56 0.63 -19.09 16 18 Si 0.91 19.09 29.56 -169.99 -5.03 14.07 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 24 H 0.07 1.30 7.34 -51.93 -0.38 0.92 16 25 H 0.14 2.65 7.32 -52.49 -0.38 2.26 16 26 H 0.12 1.92 7.02 -52.49 -0.37 1.55 16 27 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.12 1.84 8.06 -52.48 -0.42 1.41 16 30 H 0.27 6.74 8.29 -40.82 -0.34 6.40 16 LS Contribution 277.40 15.07 4.18 4.18 Total: -1.00 -30.78 277.40 -8.85 -39.63 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -2.76 Total: 0.95 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -4.10 Total: -12.94 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.17 Total: -44.47 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.32 Total: -1.41 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.78 -8.85 -39.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259490008.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.203 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds