Wall clock time and date at job start Mon Mar 30 2020 06:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36080 * 126.39189 * 2 1 4 4 C 1.38573 * 106.91693 * 180.25267 * 3 2 1 5 5 C 1.48224 * 125.96705 * 179.75429 * 4 3 2 6 6 C 1.39464 * 120.13289 * 359.73823 * 5 4 3 7 7 C 1.37960 * 119.87696 * 179.67482 * 6 5 4 8 8 C 1.38386 * 120.15963 * 0.61226 * 7 6 5 9 9 C 1.38307 * 120.27647 * 359.68395 * 8 7 6 10 10 C 1.38129 * 120.11760 * 359.97438 * 9 8 7 11 11 Cl 1.73607 * 120.08016 * 180.02562 * 10 9 8 12 12 N 1.33558 * 108.07125 * 359.74213 * 4 3 2 13 13 C 1.32822 * 109.19500 * 359.97438 * 12 4 3 14 14 C 1.39947 * 125.70266 * 179.97438 * 13 12 4 15 15 H 1.08002 * 119.99898 * 180.02562 * 14 13 12 16 16 C 1.40163 * 119.99516 * 0.30543 * 14 13 12 17 17 N 1.30724 * 120.00555 * 359.72001 * 16 14 13 18 18 Si 1.86801 * 119.99705 * 179.72098 * 16 14 13 19 19 H 1.48504 * 109.47209 * 90.00100 * 18 16 14 20 20 H 1.48506 * 109.47294 * 209.99947 * 18 16 14 21 21 H 1.48501 * 109.47275 * 329.99850 * 18 16 14 22 22 H 1.09002 * 109.47482 * 270.19364 * 1 2 3 23 23 H 1.09007 * 109.47429 * 30.18930 * 1 2 3 24 24 H 1.08998 * 109.47600 * 150.18932 * 1 2 3 25 25 H 1.07995 * 126.53660 * 359.97438 * 3 2 1 26 26 H 1.07992 * 120.05977 * 359.96200 * 6 5 4 27 27 H 1.07998 * 119.92043 * 180.31225 * 7 6 5 28 28 H 1.08006 * 119.86362 * 179.69650 * 8 7 6 29 29 H 1.08007 * 119.93841 * 180.02562 * 9 8 7 30 30 H 0.96995 * 120.00241 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2723 1.0954 0.0000 4 6 3.5787 0.6334 -0.0058 5 6 4.7994 1.4742 -0.0131 6 6 4.6918 2.8647 -0.0201 7 6 5.8314 3.6422 -0.0201 8 6 7.0801 3.0457 -0.0259 9 6 7.1944 1.6673 -0.0253 10 6 6.0609 0.8779 -0.0182 11 17 6.2056 -0.8522 -0.0167 12 7 3.5460 -0.7017 -0.0035 13 6 2.2814 -1.1076 0.0041 14 6 1.8510 -2.4392 0.0081 15 1 0.7949 -2.6654 0.0139 16 6 2.7906 -3.4793 0.0105 17 7 4.0688 -3.2056 0.0035 18 14 2.2162 -5.2568 0.0238 19 1 2.0581 -5.7363 -1.3728 20 1 3.2206 -6.0964 0.7247 21 1 0.9132 -5.3507 0.7299 22 1 -0.3634 0.0035 1.0277 23 1 -0.3634 0.8883 -0.5168 24 1 -0.3634 -0.8916 -0.5109 25 1 1.9552 2.1278 -0.0004 26 1 3.7181 3.3319 -0.0208 27 1 5.7488 4.7190 -0.0203 28 1 7.9691 3.6590 -0.0308 29 1 8.1717 1.2075 -0.0294 30 1 4.7190 -3.9253 0.0048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259490008.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:33 Heat of formation + Delta-G solvation = 61.124671 kcal Electronic energy + Delta-G solvation = -16885.950888 eV Core-core repulsion = 14093.282367 eV Total energy + Delta-G solvation = -2792.668520 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.69664 -39.67065 -36.69126 -35.21928 -34.44313 -32.15771 -31.33204 -30.02549 -27.61857 -26.39630 -23.72666 -23.25696 -21.23699 -20.61590 -18.59357 -17.95759 -16.93146 -16.29811 -15.98211 -15.87050 -15.82192 -14.80072 -14.40892 -14.29373 -14.25876 -13.86515 -13.38878 -13.27445 -12.82968 -12.77956 -12.42824 -12.19024 -11.98350 -11.96261 -11.84477 -11.22324 -11.08736 -10.36195 -9.54833 -9.41457 -9.39498 -8.49553 -8.21634 -6.16502 0.27549 0.47287 1.38899 1.44321 1.56689 1.84438 1.88650 2.29039 2.65470 2.71806 3.18433 3.77577 3.97394 4.04380 4.22552 4.30070 4.56014 4.58533 4.59628 4.60778 4.75219 4.88583 5.12219 5.14220 5.34221 5.47288 5.59909 5.69582 5.80184 6.07506 6.18703 6.36523 6.69462 7.07848 7.43419 8.35191 8.69441 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.007716 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.435396 B = 3627.739099 C = 4801.017519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.509 5.509 3 C -0.129 4.129 4 C -0.014 4.014 5 C -0.002 4.002 6 C -0.118 4.118 7 C -0.111 4.111 8 C -0.120 4.120 9 C -0.126 4.126 10 C -0.067 4.067 11 Cl -0.042 7.042 12 N -0.503 5.503 13 C 0.327 3.673 14 C -0.491 4.491 15 H 0.084 0.916 16 C 0.036 3.964 17 N -0.767 5.767 18 Si 0.983 3.017 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.257 1.257 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.074 0.926 25 H 0.178 0.822 26 H 0.140 0.860 27 H 0.163 0.837 28 H 0.163 0.837 29 H 0.138 0.862 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 9.895 -0.112 9.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.196 5.196 3 C -0.262 4.262 4 C -0.146 4.146 5 C -0.004 4.004 6 C -0.137 4.137 7 C -0.129 4.129 8 C -0.138 4.138 9 C -0.145 4.145 10 C -0.095 4.095 11 Cl -0.012 7.012 12 N -0.223 5.223 13 C 0.082 3.918 14 C -0.531 4.531 15 H 0.102 0.898 16 C -0.185 4.185 17 N -0.393 5.393 18 Si 0.805 3.195 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.181 1.181 22 H 0.083 0.917 23 H 0.111 0.889 24 H 0.093 0.907 25 H 0.195 0.805 26 H 0.158 0.842 27 H 0.181 0.819 28 H 0.181 0.819 29 H 0.156 0.844 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.703 9.188 -0.114 9.345 hybrid contribution -0.991 -0.727 0.022 1.229 sum 0.712 8.461 -0.092 8.492 Atomic orbital electron populations 1.21776 0.76903 1.03882 1.02544 1.45643 1.07242 1.06331 1.60345 1.22658 0.90480 0.92154 1.20947 1.20065 0.91286 0.92568 1.10631 1.18350 0.89708 0.93343 0.98996 1.21308 1.00643 0.90607 1.01155 1.21450 0.91321 1.01279 0.98870 1.21458 0.99185 0.93051 1.00124 1.21260 0.96763 0.94725 1.01726 1.21603 0.94997 0.87285 1.05580 1.98460 1.97969 1.08420 1.96365 1.71660 1.16900 1.07299 1.26476 1.20769 0.84359 0.88798 0.97869 1.18371 0.94562 0.87572 1.52576 0.89814 1.26538 0.94453 1.04387 0.93074 1.70225 1.01941 1.33918 1.33175 0.85212 0.78865 0.76655 0.78816 1.19389 1.20302 1.18061 0.91653 0.88889 0.90714 0.80461 0.84246 0.81904 0.81948 0.84374 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.12 10.93 127.77 1.40 4.52 16 2 N -0.51 -23.83 3.20 -542.46 -1.73 -25.56 16 3 C -0.13 -5.77 11.01 84.11 0.93 -4.84 16 4 C -0.01 -0.71 6.83 41.62 0.28 -0.43 16 5 C 0.00 -0.09 5.88 -20.01 -0.12 -0.21 16 6 C -0.12 -3.85 9.57 22.50 0.22 -3.64 16 7 C -0.11 -2.80 10.03 22.24 0.22 -2.57 16 8 C -0.12 -3.03 10.04 22.32 0.22 -2.81 16 9 C -0.13 -4.13 9.82 22.26 0.22 -3.91 16 10 C -0.07 -2.86 6.35 22.56 0.14 -2.72 16 11 Cl -0.04 -2.02 25.52 -2.72 -0.07 -2.09 16 12 N -0.50 -29.17 6.67 -182.47 -1.22 -30.38 16 13 C 0.33 18.43 7.41 133.61 0.99 19.42 16 14 C -0.49 -27.01 8.98 23.15 0.21 -26.80 16 15 H 0.08 4.23 7.12 -2.91 -0.02 4.21 16 16 C 0.04 1.90 5.50 85.33 0.47 2.37 16 17 N -0.77 -43.56 11.25 21.86 0.25 -43.31 16 18 Si 0.98 40.42 29.56 68.60 2.03 42.45 16 19 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 23 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 24 H 0.07 2.54 7.34 -2.39 -0.02 2.52 16 25 H 0.18 6.28 7.32 -2.91 -0.02 6.26 16 26 H 0.14 3.92 7.02 -2.91 -0.02 3.90 16 27 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 28 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 30 H 0.27 14.19 8.29 -92.71 -0.77 13.42 16 Total: -1.00 -71.90 277.40 5.60 -66.31 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.16 Total: 14.20 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 5.18 Total: -21.61 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -2.70 Total: -99.26 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.09 kcal Total: -71.90 5.60 -66.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259490008.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.430 kcal (2) G-P(sol) polarization free energy of solvation -71.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds