Wall clock time and date at job start Mon Mar 30 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48503 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46957 * 299.99382 * 3 2 1 6 6 H 1.48497 * 109.47609 * 59.99630 * 3 2 1 7 7 C 1.37876 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47266 * 179.97438 * 9 7 2 11 11 O 1.21315 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.46696 * 120.00027 * 180.02562 * 10 9 7 13 13 C 1.40199 * 120.26180 * 359.72225 * 12 10 9 14 14 C 1.36003 * 119.34568 * 179.97438 * 13 12 10 15 15 C 1.40377 * 121.12471 * 0.65864 * 14 13 12 16 16 C 1.38503 * 119.85120 * 359.25681 * 15 14 13 17 17 C 1.37820 * 119.16647 * 0.47890 * 16 15 14 18 18 C 1.50170 * 125.01321 * 181.03019 * 16 15 14 19 19 C 1.51957 * 113.02341 * 339.76597 * 18 16 15 20 20 C 1.53377 * 108.63074 * 58.21346 * 19 18 16 21 21 S 1.76328 * 117.03100 * 179.01313 * 15 14 13 22 22 H 0.96998 * 120.00138 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47205 * 60.00066 * 9 7 2 24 24 H 1.08997 * 109.47395 * 300.00558 * 9 7 2 25 25 H 1.08000 * 120.32729 * 0.22610 * 13 12 10 26 26 H 1.08007 * 119.43539 * 180.38837 * 14 13 12 27 27 H 1.07993 * 119.48618 * 179.86600 * 17 16 15 28 28 H 1.09000 * 108.77910 * 100.67868 * 18 16 15 29 29 H 1.09000 * 108.77534 * 218.97204 * 18 16 15 30 30 H 1.09006 * 109.61078 * 177.95124 * 19 18 16 31 31 H 1.09001 * 109.61197 * 298.29060 * 19 18 16 32 32 H 1.08994 * 109.78964 * 44.66116 * 20 19 18 33 33 H 1.09001 * 109.79322 * 165.44954 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2127 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 8 3.4232 -3.4228 0.0010 12 6 1.7416 -5.0276 0.0000 13 6 0.3644 -5.2901 0.0053 14 6 -0.0684 -6.5795 0.0041 15 6 0.8400 -7.6497 0.0115 16 6 2.2019 -7.3981 0.0046 17 6 2.6438 -6.0927 0.0005 18 6 3.2726 -8.4510 -0.0109 19 6 2.7794 -9.8072 0.4653 20 6 1.6145 -10.2470 -0.4303 21 16 0.1610 -9.2769 0.0362 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 -0.3459 -4.4765 0.0062 26 1 -1.1290 -6.7834 0.0019 27 1 3.7046 -5.8905 -0.0027 28 1 3.6502 -8.5526 -1.0283 29 1 4.0896 -8.1301 0.6354 30 1 3.5880 -10.5350 0.3974 31 1 2.4414 -9.7313 1.4988 32 1 1.8621 -10.0615 -1.4754 33 1 1.4145 -11.3080 -0.2811 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259494227.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:13 Heat of formation + Delta-G solvation = -30.309541 kcal Electronic energy + Delta-G solvation = -16558.311303 eV Core-core repulsion = 13867.261947 eV Total energy + Delta-G solvation = -2691.049356 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.73304 -37.86423 -35.61782 -32.98814 -31.23459 -31.02325 -28.82687 -27.12830 -24.68098 -23.21480 -22.18261 -21.16677 -18.66694 -17.67738 -16.52059 -15.79259 -15.62091 -15.40769 -14.73660 -14.35014 -14.11447 -13.78770 -13.70550 -13.51822 -13.17538 -12.76672 -12.67534 -12.09807 -11.91828 -11.50467 -11.25971 -11.20170 -10.88306 -10.77736 -10.66039 -10.24902 -10.02937 -9.48755 -9.26216 -8.75619 -8.54706 -8.45185 -7.44725 -6.07112 -4.07559 0.85595 1.49303 1.52408 2.16901 3.02321 3.32053 3.39337 3.47189 4.06954 4.35042 4.43838 4.47396 4.57960 4.86378 4.95880 5.04775 5.21697 5.26052 5.31040 5.39253 5.49986 5.57539 5.64430 5.78696 5.88562 6.05669 6.26427 6.35805 6.56467 6.78852 6.96221 7.21116 7.32370 7.92368 8.20216 8.62562 9.01950 9.57561 11.05043 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.047000 B = 0.004121 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.602142 B = 6792.689050 C = 7336.871572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.073 0.927 9 C -0.022 4.022 10 C 0.390 3.610 11 O -0.461 6.461 12 C -0.151 4.151 13 C -0.058 4.058 14 C -0.115 4.115 15 C -0.065 4.065 16 C -0.097 4.097 17 C -0.062 4.062 18 C -0.085 4.085 19 C -0.121 4.121 20 C -0.112 4.112 21 S -0.117 6.117 22 H 0.261 0.739 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.145 0.855 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 -20.697 -0.226 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.058 4.058 10 C 0.268 3.732 11 O -0.337 6.337 12 C -0.154 4.154 13 C -0.078 4.078 14 C -0.137 4.137 15 C -0.178 4.178 16 C -0.103 4.103 17 C -0.082 4.082 18 C -0.122 4.122 19 C -0.159 4.159 20 C -0.260 4.260 21 S 0.125 5.875 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.163 0.837 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.426 -20.993 0.010 20.997 hybrid contribution 1.425 1.353 -0.316 1.990 sum 1.851 -19.640 -0.306 19.729 Atomic orbital electron populations 1.69957 1.06036 1.26832 1.51001 1.24996 0.94887 0.99455 0.95081 0.86425 0.80327 0.83145 0.77534 1.19517 1.20960 1.20962 1.21224 0.94192 0.89564 1.50446 0.90890 1.19550 0.95011 0.91619 0.99637 1.23280 0.90860 0.88903 0.70110 1.90374 1.19521 1.87352 1.36463 1.21119 0.94254 0.96622 1.03379 1.21246 0.95273 0.96660 0.94600 1.20702 0.99012 0.91539 1.02473 1.21618 0.95030 0.96673 1.04442 1.19214 0.92199 0.95101 1.03773 1.21301 1.00413 0.90870 0.95598 1.20308 0.96662 0.92593 1.02651 1.21624 0.97602 0.96931 0.99790 1.23655 0.96552 1.02412 1.03367 1.85532 1.17479 0.97597 1.86870 0.92913 0.92714 0.92701 0.83722 0.85324 0.85077 0.90395 0.89786 0.89960 0.90178 0.89026 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.87 8.92 -34.44 -0.31 -15.17 16 8 H 0.07 2.17 6.75 -52.49 -0.35 1.82 16 9 C -0.02 -0.55 4.07 -29.04 -0.12 -0.66 16 10 C 0.39 8.83 7.10 -30.89 -0.22 8.61 16 11 O -0.46 -11.53 15.43 5.53 0.09 -11.45 16 12 C -0.15 -2.77 5.86 -105.24 -0.62 -3.39 16 13 C -0.06 -0.94 9.42 -39.65 -0.37 -1.32 16 14 C -0.11 -1.64 9.56 -39.58 -0.38 -2.02 16 15 C -0.07 -0.89 6.04 -38.68 -0.23 -1.13 16 16 C -0.10 -1.33 5.74 -104.93 -0.60 -1.93 16 17 C -0.06 -1.00 8.98 -39.23 -0.35 -1.36 16 18 C -0.09 -0.86 5.25 -28.67 -0.15 -1.01 16 19 C -0.12 -0.98 5.87 -27.07 -0.16 -1.14 16 20 C -0.11 -0.92 6.38 37.35 0.24 -0.68 16 21 S -0.12 -1.32 22.02 -107.50 -2.37 -3.68 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 24 H 0.06 1.39 8.09 -51.93 -0.42 0.97 16 25 H 0.15 2.30 7.09 -52.49 -0.37 1.92 16 26 H 0.13 1.59 8.04 -52.48 -0.42 1.17 16 27 H 0.13 2.09 7.54 -52.49 -0.40 1.69 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.71 8.01 -51.93 -0.42 0.29 16 32 H 0.09 0.74 8.04 -51.93 -0.42 0.32 16 33 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 292.66 15.07 4.41 4.41 Total: -1.00 -31.40 292.66 -9.56 -40.97 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -4.04 Total: -2.04 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -3.37 Total: -19.67 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.37 Total: -3.68 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.40 -9.56 -40.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259494227.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.656 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds