Wall clock time and date at job start Mon Mar 30 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48503 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46957 * 299.99382 * 3 2 1 6 6 H 1.48497 * 109.47609 * 59.99630 * 3 2 1 7 7 C 1.37876 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47266 * 179.97438 * 9 7 2 11 11 O 1.21315 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.46696 * 120.00027 * 180.02562 * 10 9 7 13 13 C 1.40199 * 120.26180 * 359.72225 * 12 10 9 14 14 C 1.36003 * 119.34568 * 179.97438 * 13 12 10 15 15 C 1.40377 * 121.12471 * 0.65864 * 14 13 12 16 16 C 1.38503 * 119.85120 * 359.25681 * 15 14 13 17 17 C 1.37820 * 119.16647 * 0.47890 * 16 15 14 18 18 C 1.50170 * 125.01321 * 181.03019 * 16 15 14 19 19 C 1.51957 * 113.02341 * 339.76597 * 18 16 15 20 20 C 1.53377 * 108.63074 * 58.21346 * 19 18 16 21 21 S 1.76328 * 117.03100 * 179.01313 * 15 14 13 22 22 H 0.96998 * 120.00138 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47205 * 60.00066 * 9 7 2 24 24 H 1.08997 * 109.47395 * 300.00558 * 9 7 2 25 25 H 1.08000 * 120.32729 * 0.22610 * 13 12 10 26 26 H 1.08007 * 119.43539 * 180.38837 * 14 13 12 27 27 H 1.07993 * 119.48618 * 179.86600 * 17 16 15 28 28 H 1.09000 * 108.77910 * 100.67868 * 18 16 15 29 29 H 1.09000 * 108.77534 * 218.97204 * 18 16 15 30 30 H 1.09006 * 109.61078 * 177.95124 * 19 18 16 31 31 H 1.09001 * 109.61197 * 298.29060 * 19 18 16 32 32 H 1.08994 * 109.78964 * 44.66116 * 20 19 18 33 33 H 1.09001 * 109.79322 * 165.44954 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2127 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 8 3.4232 -3.4228 0.0010 12 6 1.7416 -5.0276 0.0000 13 6 0.3644 -5.2901 0.0053 14 6 -0.0684 -6.5795 0.0041 15 6 0.8400 -7.6497 0.0115 16 6 2.2019 -7.3981 0.0046 17 6 2.6438 -6.0927 0.0005 18 6 3.2726 -8.4510 -0.0109 19 6 2.7794 -9.8072 0.4653 20 6 1.6145 -10.2470 -0.4303 21 16 0.1610 -9.2769 0.0362 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 -0.3459 -4.4765 0.0062 26 1 -1.1290 -6.7834 0.0019 27 1 3.7046 -5.8905 -0.0027 28 1 3.6502 -8.5526 -1.0283 29 1 4.0896 -8.1301 0.6354 30 1 3.5880 -10.5350 0.3974 31 1 2.4414 -9.7313 1.4988 32 1 1.8621 -10.0615 -1.4754 33 1 1.4145 -11.3080 -0.2811 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259494227.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:12 Heat of formation + Delta-G solvation = -47.068865 kcal Electronic energy + Delta-G solvation = -16559.038042 eV Core-core repulsion = 13867.261947 eV Total energy + Delta-G solvation = -2691.776094 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.08761 -39.43592 -36.53127 -35.15060 -32.47674 -32.28210 -30.68773 -27.99013 -26.50390 -24.46541 -23.54067 -22.20737 -20.16571 -18.82155 -18.46707 -17.24074 -16.93672 -16.49528 -16.39432 -15.84034 -15.61934 -14.94690 -14.86278 -14.68673 -14.41993 -14.13819 -13.82944 -13.66474 -13.24077 -12.83423 -12.78884 -12.61107 -12.41180 -12.27326 -12.09096 -11.78746 -11.41945 -11.12284 -10.66370 -10.61202 -10.35777 -9.91053 -8.41712 -8.26738 -6.35433 -0.47676 0.31473 0.61039 1.30135 1.37957 1.38602 1.48278 1.53290 2.38928 2.69456 3.08087 3.28781 3.58471 3.72066 3.82442 3.90543 4.20918 4.26677 4.36746 4.46912 4.59767 4.60280 4.71602 4.85805 4.95537 4.99968 5.09175 5.15649 5.21379 5.24869 5.28366 5.41609 5.69634 5.75210 6.09638 6.74175 6.82627 7.33647 8.85419 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.047000 B = 0.004121 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.602142 B = 6792.689050 C = 7336.871572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.055 0.945 9 C -0.019 4.019 10 C 0.396 3.604 11 O -0.496 6.496 12 C -0.181 4.181 13 C -0.063 4.063 14 C -0.117 4.117 15 C -0.063 4.063 16 C -0.095 4.095 17 C -0.063 4.063 18 C -0.088 4.088 19 C -0.116 4.116 20 C -0.108 4.108 21 S -0.115 6.115 22 H 0.268 0.732 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.139 0.861 26 H 0.150 0.850 27 H 0.129 0.871 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 -23.139 -0.351 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.056 4.056 10 C 0.277 3.723 11 O -0.375 6.375 12 C -0.184 4.184 13 C -0.083 4.083 14 C -0.139 4.139 15 C -0.176 4.176 16 C -0.102 4.102 17 C -0.083 4.083 18 C -0.125 4.125 19 C -0.154 4.154 20 C -0.256 4.256 21 S 0.128 5.872 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.157 0.843 26 H 0.167 0.833 27 H 0.147 0.853 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.632 -23.461 -0.114 23.470 hybrid contribution 1.298 1.927 -0.283 2.340 sum 1.929 -21.534 -0.396 21.624 Atomic orbital electron populations 1.70036 1.07188 1.28065 1.51012 1.25803 0.95848 1.02801 0.94332 0.85423 0.78657 0.78853 0.78281 1.19836 1.19686 1.19707 1.21466 0.93725 0.91662 1.51540 0.92657 1.19421 0.95256 0.92041 0.98851 1.23166 0.89728 0.90469 0.68903 1.90338 1.20392 1.88139 1.38641 1.20676 0.95598 0.94480 1.07669 1.21207 0.94245 0.97729 0.95085 1.20931 1.00327 0.90840 1.01824 1.21991 0.95114 0.98488 1.02019 1.19594 0.93257 0.94982 1.02321 1.21375 0.99922 0.91565 0.95392 1.20435 0.95539 0.92703 1.03828 1.21626 0.98457 0.96200 0.99136 1.23864 0.94764 1.03166 1.03765 1.85594 1.19403 0.95880 1.86274 0.92347 0.93496 0.93507 0.84289 0.83278 0.85347 0.89024 0.89159 0.86752 0.90816 0.88272 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.76 13.29 21.45 0.28 -54.48 16 2 C 0.01 0.64 5.46 84.65 0.46 1.10 16 3 Si 0.96 45.67 29.54 68.60 2.03 47.69 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.55 -32.75 8.92 25.60 0.23 -32.52 16 8 H 0.06 3.45 6.75 -2.91 -0.02 3.43 16 9 C -0.02 -1.01 4.07 29.10 0.12 -0.89 16 10 C 0.40 18.95 7.10 27.90 0.20 19.15 16 11 O -0.50 -26.17 15.43 -3.14 -0.05 -26.22 16 12 C -0.18 -6.92 5.86 -20.27 -0.12 -7.04 16 13 C -0.06 -2.10 9.42 22.23 0.21 -1.89 16 14 C -0.12 -3.26 9.56 22.27 0.21 -3.04 16 15 C -0.06 -1.63 6.04 22.85 0.14 -1.49 16 16 C -0.10 -2.46 5.74 -20.07 -0.12 -2.58 16 17 C -0.06 -2.04 8.98 22.50 0.20 -1.84 16 18 C -0.09 -1.52 5.25 29.34 0.15 -1.37 16 19 C -0.12 -1.38 5.87 30.38 0.18 -1.20 16 20 C -0.11 -1.29 6.38 72.11 0.46 -0.83 16 21 S -0.11 -2.23 22.02 -56.49 -1.24 -3.47 16 22 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 23 H 0.05 2.53 8.10 -2.38 -0.02 2.51 16 24 H 0.05 2.53 8.09 -2.39 -0.02 2.51 16 25 H 0.14 4.67 7.09 -2.91 -0.02 4.65 16 26 H 0.15 3.48 8.04 -2.91 -0.02 3.45 16 27 H 0.13 4.18 7.54 -2.91 -0.02 4.15 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 1.48 8.04 -2.39 -0.02 1.46 16 30 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 1.03 8.01 -2.39 -0.02 1.01 16 32 H 0.10 1.14 8.04 -2.39 -0.02 1.12 16 33 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -69.51 292.66 4.46 -65.05 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.11 Total: 5.86 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 2.33 Total: -34.44 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.28 Total: -54.48 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.22 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -1.24 Total: -3.47 kcal Total: -69.51 4.46 -65.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259494227.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.984 kcal (2) G-P(sol) polarization free energy of solvation -69.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds