Wall clock time and date at job start Mon Mar 30 2020 06:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36067 * 126.39063 * 2 1 4 4 C 1.38577 * 106.91970 * 180.02562 * 3 2 1 5 5 C 1.48225 * 125.96443 * 179.97438 * 4 3 2 6 6 C 1.39465 * 120.11668 * 180.02562 * 5 4 3 7 7 C 1.37958 * 119.87978 * 180.02562 * 6 5 4 8 8 C 1.38482 * 120.11893 * 0.02562 * 7 6 5 9 9 Cl 1.73599 * 119.87953 * 179.97438 * 8 7 6 10 10 C 1.38480 * 120.23327 * 0.23242 * 8 7 6 11 11 C 1.37947 * 120.11777 * 359.48810 * 10 8 7 12 12 N 1.33542 * 108.06894 * 0.22710 * 4 3 2 13 13 C 1.32830 * 109.19924 * 359.62502 * 12 4 3 14 14 C 1.39942 * 125.70552 * 180.14430 * 13 12 4 15 15 H 1.08003 * 119.99970 * 180.26547 * 14 13 12 16 16 C 1.40168 * 120.00065 * 0.27376 * 14 13 12 17 17 N 1.30725 * 119.99555 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00263 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46884 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47312 * 119.99248 * 18 16 14 21 21 H 1.48498 * 109.46844 * 239.99989 * 18 16 14 22 22 H 1.08999 * 109.46884 * 89.97902 * 1 2 3 23 23 H 1.08998 * 109.46851 * 209.97248 * 1 2 3 24 24 H 1.08993 * 109.47298 * 329.97690 * 1 2 3 25 25 H 1.08002 * 126.54209 * 0.02562 * 3 2 1 26 26 H 1.07995 * 120.05840 * 0.04350 * 6 5 4 27 27 H 1.08001 * 119.93781 * 179.97438 * 7 6 5 28 28 H 1.07998 * 119.93228 * 179.71836 * 10 8 7 29 29 H 1.08007 * 120.05535 * 180.27436 * 11 10 8 30 30 H 0.97007 * 119.99642 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2723 1.0953 0.0000 4 6 3.5788 0.6334 -0.0006 5 6 4.7994 1.4743 -0.0013 6 6 6.0601 0.8779 -0.0024 7 6 7.1929 1.6653 -0.0026 8 6 7.0799 3.0455 -0.0011 9 17 8.5095 4.0303 -0.0007 10 6 5.8305 3.6428 0.0053 11 6 4.6914 2.8648 -0.0003 12 7 3.5462 -0.7016 -0.0060 13 6 2.2814 -1.1076 -0.0006 14 6 1.8512 -2.4393 -0.0009 15 1 0.7951 -2.6655 -0.0005 16 6 2.7907 -3.4794 -0.0014 17 7 4.0690 -3.2054 -0.0022 18 14 2.2164 -5.2569 -0.0011 19 1 0.7320 -5.2974 0.0004 20 1 2.7295 -5.9431 -1.2139 21 1 2.7311 -5.9431 1.2111 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8897 0.5142 25 1 1.9553 2.1278 0.0004 26 1 6.1494 -0.1983 -0.0034 27 1 8.1697 1.2044 -0.0030 28 1 5.7480 4.7196 0.0110 29 1 3.7174 3.3317 0.0003 30 1 4.7192 -3.9253 -0.0030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259495995.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:35 Heat of formation + Delta-G solvation = 51.132235 kcal Electronic energy + Delta-G solvation = -16390.932424 eV Core-core repulsion = 13597.830599 eV Total energy + Delta-G solvation = -2793.101825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.80609 -39.83760 -37.34315 -35.30552 -34.45229 -32.14094 -31.78183 -30.05889 -27.68256 -26.46077 -23.72546 -23.53630 -21.35520 -20.69654 -18.67422 -18.09892 -17.19689 -16.36721 -16.03401 -15.93177 -15.91653 -14.77732 -14.46275 -14.41302 -14.30046 -14.18146 -13.49152 -13.46591 -12.88959 -12.85165 -12.55228 -12.37275 -12.35750 -12.24580 -11.82303 -11.66650 -11.13927 -10.28418 -9.92780 -9.82014 -9.55114 -8.56993 -8.32936 -6.27266 0.08861 0.45289 1.21189 1.35564 1.44034 1.59055 1.80016 2.25949 2.51162 2.65458 3.11629 3.67838 3.90019 3.99224 4.04437 4.29122 4.45673 4.48441 4.58289 4.59110 4.75332 4.83903 4.97703 5.17134 5.25158 5.32787 5.36799 5.68402 5.81470 5.91946 6.09745 6.31375 6.61509 6.99361 7.33864 8.24065 8.62963 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.004933 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.128630 B = 5674.930480 C = 6663.912498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.508 5.508 3 C -0.118 4.118 4 C -0.016 4.016 5 C 0.012 3.988 6 C -0.111 4.111 7 C -0.108 4.108 8 C -0.055 4.055 9 Cl -0.070 7.070 10 C -0.099 4.099 11 C -0.109 4.109 12 N -0.540 5.540 13 C 0.336 3.664 14 C -0.492 4.492 15 H 0.091 0.909 16 C 0.033 3.967 17 N -0.791 5.791 18 Si 0.991 3.009 19 H -0.251 1.251 20 H -0.272 1.272 21 H -0.272 1.272 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.186 0.814 26 H 0.108 0.892 27 H 0.141 0.859 28 H 0.162 0.838 29 H 0.150 0.850 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 9.897 0.110 9.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.195 5.195 3 C -0.252 4.252 4 C -0.146 4.146 5 C 0.011 3.989 6 C -0.131 4.131 7 C -0.127 4.127 8 C -0.082 4.082 9 Cl -0.041 7.041 10 C -0.118 4.118 11 C -0.128 4.128 12 N -0.261 5.261 13 C 0.090 3.910 14 C -0.532 4.532 15 H 0.109 0.891 16 C -0.186 4.186 17 N -0.417 5.417 18 Si 0.812 3.188 19 H -0.174 1.174 20 H -0.197 1.197 21 H -0.197 1.197 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.203 0.797 26 H 0.126 0.874 27 H 0.159 0.841 28 H 0.179 0.821 29 H 0.168 0.832 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.681 9.457 0.104 9.482 hybrid contribution -0.630 -0.480 -0.018 0.792 sum 0.051 8.977 0.087 8.977 Atomic orbital electron populations 1.21836 0.76436 1.04163 1.02832 1.45624 1.07486 1.06199 1.60165 1.22810 0.90329 0.92432 1.19629 1.20082 0.91660 0.92104 1.10771 1.18412 0.90856 0.92909 0.96734 1.21156 0.91865 0.99920 1.00134 1.21025 0.99042 0.91909 1.00707 1.20951 0.88339 0.91187 1.07749 1.98331 1.38653 1.69970 1.97126 1.21138 0.89476 1.01367 0.99801 1.21223 0.99676 0.91088 1.00790 1.71215 1.18479 1.08256 1.28176 1.20557 0.83977 0.88889 0.97568 1.18551 0.94983 0.87514 1.52110 0.89144 1.26688 0.94243 1.05192 0.92460 1.70172 1.02578 1.34913 1.34086 0.85037 0.79751 0.75744 0.78304 1.17384 1.19695 1.19680 0.91363 0.90554 0.88558 0.79740 0.87388 0.84098 0.82080 0.83216 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.91 10.93 127.77 1.40 4.30 16 2 N -0.51 -23.07 3.20 -542.45 -1.73 -24.80 16 3 C -0.12 -5.09 11.01 84.12 0.93 -4.17 16 4 C -0.02 -0.77 6.90 41.62 0.29 -0.49 16 5 C 0.01 0.51 5.88 -20.03 -0.12 0.40 16 6 C -0.11 -4.66 9.69 22.50 0.22 -4.44 16 7 C -0.11 -3.63 9.81 22.26 0.22 -3.41 16 8 C -0.06 -1.62 6.33 22.39 0.14 -1.48 16 9 Cl -0.07 -1.70 28.95 -2.72 -0.08 -1.78 16 10 C -0.10 -2.71 9.81 22.26 0.22 -2.49 16 11 C -0.11 -3.47 9.57 22.50 0.22 -3.25 16 12 N -0.54 -31.46 9.03 -182.47 -1.65 -33.11 16 13 C 0.34 18.63 7.41 133.60 0.99 19.62 16 14 C -0.49 -26.62 8.98 23.15 0.21 -26.41 16 15 H 0.09 4.44 7.11 -2.91 -0.02 4.42 16 16 C 0.03 1.74 5.50 85.33 0.47 2.21 16 17 N -0.79 -45.14 11.88 21.87 0.26 -44.88 16 18 Si 0.99 39.22 29.56 68.60 2.03 41.25 16 19 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 20 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 21 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 22 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.08 2.46 7.33 -2.39 -0.02 2.44 16 24 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.19 6.09 7.31 -2.91 -0.02 6.07 16 26 H 0.11 5.23 7.85 -2.91 -0.02 5.21 16 27 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 28 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.15 3.95 7.02 -2.91 -0.02 3.93 16 30 H 0.27 14.29 8.29 -92.70 -0.77 13.52 16 Total: -1.00 -68.89 283.08 5.16 -63.73 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 1.16 Total: 19.21 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 5.17 Total: -19.61 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -3.12 Total: -102.79 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.78 kcal Total: -68.89 5.16 -63.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259495995.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.859 kcal (2) G-P(sol) polarization free energy of solvation -68.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds