Wall clock time and date at job start Mon Mar 30 2020 06:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48501 * 109.47177 * 239.99688 * 3 2 1 5 5 H 1.48496 * 109.47387 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47294 * 120.00231 * 3 2 1 7 7 C 1.37881 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99709 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47284 * 299.99896 * 9 7 2 11 11 N 1.46899 * 109.47283 * 60.00550 * 9 7 2 12 12 C 1.50706 * 109.46931 * 180.02562 * 9 7 2 13 13 C 1.36624 * 120.91720 * 264.99795 * 12 9 7 14 14 C 1.39278 * 119.93969 * 180.02562 * 13 12 9 15 15 N 1.31119 * 121.74554 * 0.02562 * 14 13 12 16 16 C 1.33668 * 121.31917 * 359.97438 * 15 14 13 17 17 C 1.40562 * 121.06900 * 179.97438 * 16 15 14 18 18 C 1.36194 * 119.74292 * 180.02562 * 17 16 15 19 19 Cl 1.73597 * 119.47677 * 179.97438 * 18 17 16 20 20 C 1.39484 * 121.04095 * 359.97438 * 18 17 16 21 21 C 1.36109 * 120.85864 * 0.02562 * 20 18 17 22 22 C 1.40454 * 119.62652 * 359.72206 * 21 20 18 23 23 H 0.96996 * 120.00425 * 0.02562 * 1 2 3 24 24 H 1.00907 * 110.99580 * 296.03872 * 11 9 7 25 25 H 1.00889 * 111.00263 * 59.99431 * 11 9 7 26 26 H 1.07999 * 120.03053 * 0.03053 * 13 12 9 27 27 H 1.07998 * 119.12742 * 180.02562 * 14 13 12 28 28 H 1.08002 * 120.12785 * 359.97438 * 17 16 15 29 29 H 1.07997 * 119.57341 * 180.02562 * 20 18 17 30 30 H 1.07999 * 120.18372 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 0.4061 -2.5767 -1.1997 12 6 2.2304 -3.6446 -0.0005 13 6 2.6089 -4.2445 -1.1682 14 6 3.5150 -5.3020 -1.1445 15 7 4.0248 -5.7486 -0.0220 16 6 3.6964 -5.2062 1.1547 17 6 4.2457 -5.6895 2.3548 18 6 3.8918 -5.1169 3.5388 19 17 4.5738 -5.7197 5.0169 20 6 2.9899 -4.0537 3.5823 21 6 2.4378 -3.5593 2.4407 22 6 2.7844 -4.1223 1.2015 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3013 -1.8572 -1.1907 25 1 0.9638 -2.5251 -2.0389 26 1 2.2059 -3.8991 -2.1087 27 1 3.8055 -5.7664 -2.0752 28 1 4.9451 -6.5123 2.3383 29 1 2.7262 -3.6171 4.5343 30 1 1.7410 -2.7355 2.4870 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259507587.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:11 Heat of formation + Delta-G solvation = 37.792729 kcal Electronic energy + Delta-G solvation = -16817.243364 eV Core-core repulsion = 14023.563094 eV Total energy + Delta-G solvation = -2793.680269 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.46998 -37.29471 -35.86435 -35.53796 -32.63768 -30.91657 -30.07412 -29.20663 -26.33343 -24.09738 -23.27886 -22.52073 -20.01698 -17.76803 -17.08324 -16.71992 -16.25194 -15.03585 -14.70691 -14.10821 -14.01611 -13.89688 -13.36844 -13.24240 -12.94162 -12.52628 -12.20810 -11.75802 -11.45702 -11.14138 -11.10095 -10.95096 -10.82785 -10.71447 -10.34738 -10.14285 -9.55960 -8.98596 -8.79489 -8.31850 -7.79310 -7.42861 -6.28929 -4.46967 0.79374 1.14093 2.20261 2.46049 3.13607 3.19511 3.20502 3.24096 4.17337 4.54069 4.68179 4.91785 5.00348 5.22225 5.29107 5.43007 5.48524 5.62348 5.94455 6.03708 6.24911 6.33154 6.40087 6.46774 6.62458 6.84909 6.90254 7.18898 7.42557 7.55515 7.82466 8.30815 8.43552 8.70138 8.89171 9.26081 10.69157 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.006501 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.222706 B = 4306.035476 C = 5161.620637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.071 3.929 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.237 3.763 10 H 0.057 0.943 11 N -0.850 5.850 12 C 0.041 3.959 13 C -0.187 4.187 14 C 0.140 3.860 15 N -0.503 5.503 16 C 0.136 3.864 17 C -0.099 4.099 18 C -0.012 4.012 19 Cl -0.080 7.080 20 C -0.140 4.140 21 C -0.046 4.046 22 C -0.103 4.103 23 H 0.269 0.731 24 H 0.360 0.640 25 H 0.314 0.686 26 H 0.137 0.863 27 H 0.152 0.848 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.726 -7.244 3.190 9.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.132 4.132 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.127 3.873 10 H 0.075 0.925 11 N -0.380 5.380 12 C 0.033 3.967 13 C -0.207 4.207 14 C -0.030 4.030 15 N -0.212 5.212 16 C 0.014 3.986 17 C -0.118 4.118 18 C -0.040 4.040 19 Cl -0.052 7.052 20 C -0.159 4.159 21 C -0.065 4.065 22 C -0.106 4.106 23 H 0.079 0.921 24 H 0.177 0.823 25 H 0.124 0.876 26 H 0.155 0.845 27 H 0.170 0.830 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.999 -8.601 3.700 10.614 hybrid contribution 0.379 2.617 -0.102 2.646 sum 5.378 -5.984 3.598 8.814 Atomic orbital electron populations 1.69712 1.05857 1.27770 1.49441 1.24987 0.94962 0.99384 0.93902 0.86525 0.79589 0.82253 0.78983 1.20078 1.20997 1.19962 1.21622 0.93606 0.90390 1.53250 0.92520 1.18058 0.89011 0.87724 0.92474 0.92510 1.59533 1.18359 1.56323 1.03833 1.20876 0.92260 0.92750 0.90848 1.21657 1.00513 0.98524 1.00000 1.22878 0.91574 0.92706 0.95846 1.67947 1.25787 1.29800 0.97674 1.18567 0.94881 0.93081 0.92038 1.20446 1.01259 1.01043 0.89059 1.20508 0.98889 0.97800 0.86802 1.98345 1.84226 1.87494 1.35095 1.20682 0.98560 0.96963 0.99684 1.21261 0.97211 0.97688 0.90309 1.18854 0.99264 0.97437 0.95027 0.92063 0.82346 0.87604 0.84510 0.83037 0.84453 0.84997 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.74 11.54 55.43 0.64 -22.10 16 2 C 0.07 1.78 5.38 -17.82 -0.10 1.69 16 3 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.55 -13.62 8.71 -34.44 -0.30 -13.92 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.24 5.40 2.39 -70.02 -0.17 5.24 16 10 H 0.06 1.40 6.79 -51.93 -0.35 1.05 16 11 N -0.85 -18.52 8.81 -6.65 -0.06 -18.58 16 12 C 0.04 0.84 5.03 -104.27 -0.52 0.32 16 13 C -0.19 -3.39 9.29 -39.78 -0.37 -3.76 16 14 C 0.14 2.32 11.14 -17.47 -0.19 2.12 16 15 N -0.50 -9.12 10.34 -10.98 -0.11 -9.24 16 16 C 0.14 2.54 6.60 -84.86 -0.56 1.98 16 17 C -0.10 -1.61 9.72 -39.44 -0.38 -2.00 16 18 C -0.01 -0.18 6.27 -39.85 -0.25 -0.43 16 19 Cl -0.08 -1.06 28.91 -51.86 -1.50 -2.56 16 20 C -0.14 -2.21 9.72 -39.88 -0.39 -2.60 16 21 C -0.05 -0.84 9.31 -39.51 -0.37 -1.20 16 22 C -0.10 -2.03 5.74 -106.80 -0.61 -2.64 16 23 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 24 H 0.36 8.44 7.08 -39.29 -0.28 8.17 16 25 H 0.31 6.42 7.28 -39.30 -0.29 6.14 16 26 H 0.14 2.29 6.37 -52.49 -0.33 1.96 16 27 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.15 2.80 6.57 -52.49 -0.34 2.46 16 LS Contribution 274.08 15.07 4.13 4.13 Total: -1.00 -25.86 274.08 -8.54 -34.40 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -2.40 Total: 14.31 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -4.21 Total: -15.20 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.47 Total: -49.92 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -25.86 -8.54 -34.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259507587.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.190 kcal (2) G-P(sol) polarization free energy of solvation -25.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds