Wall clock time and date at job start Mon Mar 30 2020 06:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48501 * 109.47177 * 239.99688 * 3 2 1 5 5 H 1.48496 * 109.47387 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47294 * 120.00231 * 3 2 1 7 7 C 1.37881 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99709 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47284 * 299.99896 * 9 7 2 11 11 N 1.46899 * 109.47283 * 60.00550 * 9 7 2 12 12 C 1.50706 * 109.46931 * 180.02562 * 9 7 2 13 13 C 1.36624 * 120.91720 * 264.99795 * 12 9 7 14 14 C 1.39278 * 119.93969 * 180.02562 * 13 12 9 15 15 N 1.31119 * 121.74554 * 0.02562 * 14 13 12 16 16 C 1.33668 * 121.31917 * 359.97438 * 15 14 13 17 17 C 1.40562 * 121.06900 * 179.97438 * 16 15 14 18 18 C 1.36194 * 119.74292 * 180.02562 * 17 16 15 19 19 Cl 1.73597 * 119.47677 * 179.97438 * 18 17 16 20 20 C 1.39484 * 121.04095 * 359.97438 * 18 17 16 21 21 C 1.36109 * 120.85864 * 0.02562 * 20 18 17 22 22 C 1.40454 * 119.62652 * 359.72206 * 21 20 18 23 23 H 0.96996 * 120.00425 * 0.02562 * 1 2 3 24 24 H 1.00907 * 110.99580 * 296.03872 * 11 9 7 25 25 H 1.00889 * 111.00263 * 59.99431 * 11 9 7 26 26 H 1.07999 * 120.03053 * 0.03053 * 13 12 9 27 27 H 1.07998 * 119.12742 * 180.02562 * 14 13 12 28 28 H 1.08002 * 120.12785 * 359.97438 * 17 16 15 29 29 H 1.07997 * 119.57341 * 180.02562 * 20 18 17 30 30 H 1.07999 * 120.18372 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 0.4061 -2.5767 -1.1997 12 6 2.2304 -3.6446 -0.0005 13 6 2.6089 -4.2445 -1.1682 14 6 3.5150 -5.3020 -1.1445 15 7 4.0248 -5.7486 -0.0220 16 6 3.6964 -5.2062 1.1547 17 6 4.2457 -5.6895 2.3548 18 6 3.8918 -5.1169 3.5388 19 17 4.5738 -5.7197 5.0169 20 6 2.9899 -4.0537 3.5823 21 6 2.4378 -3.5593 2.4407 22 6 2.7844 -4.1223 1.2015 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3013 -1.8572 -1.1907 25 1 0.9638 -2.5251 -2.0389 26 1 2.2059 -3.8991 -2.1087 27 1 3.8055 -5.7664 -2.0752 28 1 4.9451 -6.5123 2.3383 29 1 2.7262 -3.6171 4.5343 30 1 1.7410 -2.7355 2.4870 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259507587.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:11 Heat of formation + Delta-G solvation = 22.834875 kcal Electronic energy + Delta-G solvation = -16817.891985 eV Core-core repulsion = 14023.563094 eV Total energy + Delta-G solvation = -2794.328890 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.85032 -38.57837 -37.23893 -37.04807 -34.34283 -32.55242 -31.41958 -30.63409 -28.17013 -25.63144 -24.68118 -23.99350 -21.54600 -19.12861 -18.65853 -18.43537 -17.69172 -16.63658 -16.28712 -15.54846 -15.43526 -15.26573 -14.82375 -14.78758 -14.54211 -13.84501 -13.77668 -13.30821 -12.95399 -12.87566 -12.81914 -12.35583 -12.15933 -12.05862 -12.00872 -11.88285 -11.06764 -10.70028 -10.39398 -9.64859 -9.30935 -9.13159 -8.18227 -6.43597 -0.57420 -0.20903 0.99389 1.03209 1.36666 1.39605 1.46240 1.89282 2.33809 3.00410 3.13857 3.40140 3.62377 3.85236 3.99668 4.07972 4.10140 4.27114 4.47989 4.65743 4.82292 4.90629 4.96754 5.10949 5.16914 5.28334 5.50852 5.58800 5.75400 5.84213 5.96635 6.56011 6.84281 6.93823 7.06175 7.32915 8.76608 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.006501 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.222706 B = 4306.035476 C = 5161.620637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.556 4.556 8 H 0.043 0.957 9 C 0.246 3.754 10 H 0.028 0.972 11 N -0.842 5.842 12 C 0.009 3.991 13 C -0.184 4.184 14 C 0.145 3.855 15 N -0.507 5.507 16 C 0.119 3.881 17 C -0.097 4.097 18 C -0.011 4.011 19 Cl -0.053 7.053 20 C -0.125 4.125 21 C -0.070 4.070 22 C -0.120 4.120 23 H 0.270 0.730 24 H 0.350 0.650 25 H 0.322 0.678 26 H 0.148 0.852 27 H 0.196 0.804 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.066 -8.058 3.384 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.168 4.168 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.061 0.939 9 C 0.135 3.865 10 H 0.045 0.955 11 N -0.372 5.372 12 C 0.001 3.999 13 C -0.204 4.204 14 C -0.026 4.026 15 N -0.216 5.216 16 C -0.003 4.003 17 C -0.116 4.116 18 C -0.039 4.039 19 Cl -0.024 7.024 20 C -0.143 4.143 21 C -0.089 4.089 22 C -0.123 4.123 23 H 0.080 0.920 24 H 0.165 0.835 25 H 0.133 0.867 26 H 0.165 0.835 27 H 0.213 0.787 28 H 0.174 0.826 29 H 0.173 0.827 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.347 -9.426 3.902 12.015 hybrid contribution -0.001 2.790 -0.093 2.791 sum 6.346 -6.636 3.808 9.941 Atomic orbital electron populations 1.69795 1.06704 1.28308 1.49957 1.25587 0.95633 1.01853 0.93748 0.85694 0.78507 0.79284 0.78678 1.19900 1.20518 1.20176 1.21754 0.92986 0.91764 1.53103 0.93910 1.17780 0.88923 0.88245 0.91519 0.95455 1.59494 1.18090 1.55601 1.04012 1.20758 0.93318 0.93361 0.92496 1.21882 1.00415 0.98589 0.99546 1.23477 0.90340 0.91827 0.96983 1.68031 1.25845 1.29778 0.97950 1.18846 0.95147 0.93128 0.93147 1.20652 1.01113 1.01275 0.88581 1.20549 0.98371 0.97287 0.87742 1.98357 1.83710 1.87082 1.33293 1.20913 0.97282 0.96313 0.99795 1.21164 0.98351 0.98305 0.91063 1.19012 0.99891 0.98197 0.95151 0.92021 0.83504 0.86728 0.83453 0.78719 0.82647 0.82652 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.17 11.54 21.45 0.25 -46.92 16 2 C 0.03 1.69 5.38 84.66 0.46 2.14 16 3 Si 0.95 40.89 29.54 68.60 2.03 42.91 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.56 -28.21 8.71 25.60 0.22 -27.99 16 8 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 9 C 0.25 11.53 2.39 43.42 0.10 11.63 16 10 H 0.03 1.43 6.79 -2.38 -0.02 1.42 16 11 N -0.84 -37.35 8.81 -174.95 -1.54 -38.89 16 12 C 0.01 0.38 5.03 -19.64 -0.10 0.28 16 13 C -0.18 -6.55 9.29 22.14 0.21 -6.34 16 14 C 0.14 4.46 11.14 85.05 0.95 5.41 16 15 N -0.51 -17.47 10.34 -188.66 -1.95 -19.42 16 16 C 0.12 4.31 6.60 40.29 0.27 4.57 16 17 C -0.10 -3.00 9.72 22.36 0.22 -2.78 16 18 C -0.01 -0.32 6.27 22.09 0.14 -0.18 16 19 Cl -0.05 -1.26 28.91 -2.72 -0.08 -1.34 16 20 C -0.12 -3.81 9.72 22.07 0.21 -3.60 16 21 C -0.07 -2.59 9.31 22.31 0.21 -2.39 16 22 C -0.12 -4.76 5.74 -21.27 -0.12 -4.88 16 23 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 24 H 0.35 16.78 7.08 -89.69 -0.63 16.14 16 25 H 0.32 13.21 7.28 -89.70 -0.65 12.56 16 26 H 0.15 4.78 6.37 -2.91 -0.02 4.76 16 27 H 0.20 4.17 8.06 -2.91 -0.02 4.15 16 28 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 29 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 30 H 0.13 5.27 6.57 -2.91 -0.02 5.25 16 Total: -1.00 -55.04 274.08 1.38 -53.67 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.08 Total: 34.12 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 2.76 Total: -24.12 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -3.24 Total: -105.24 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -55.04 1.38 -53.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259507587.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.501 kcal (2) G-P(sol) polarization free energy of solvation -55.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds