Wall clock time and date at job start Mon Mar 30 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99738 * 2 1 4 4 H 1.48501 * 109.47200 * 264.99288 * 3 2 1 5 5 H 1.48501 * 109.47095 * 24.99316 * 3 2 1 6 6 H 1.48498 * 109.47228 * 144.99156 * 3 2 1 7 7 C 1.37875 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99769 * 189.58277 * 7 2 1 9 9 C 1.50694 * 120.00474 * 9.57626 * 7 2 1 10 10 H 1.09003 * 109.47189 * 305.50095 * 9 7 2 11 11 N 1.46900 * 109.46935 * 65.49318 * 9 7 2 12 12 C 1.50697 * 109.47499 * 185.49572 * 9 7 2 13 13 C 1.36614 * 120.92353 * 265.00029 * 12 9 7 14 14 C 1.39293 * 119.93276 * 179.72046 * 13 12 9 15 15 N 1.31111 * 121.74793 * 0.27961 * 14 13 12 16 16 C 1.33634 * 121.31907 * 359.97438 * 15 14 13 17 17 C 1.40717 * 121.08504 * 180.02562 * 16 15 14 18 18 Cl 1.73600 * 120.13593 * 359.96380 * 17 16 15 19 19 C 1.36180 * 119.72739 * 179.97438 * 17 16 15 20 20 C 1.39344 * 121.05565 * 359.97438 * 19 17 16 21 21 C 1.36138 * 120.88688 * 0.02829 * 20 19 17 22 22 C 1.40439 * 119.64513 * 359.94686 * 21 20 19 23 23 H 0.96999 * 120.00375 * 359.97438 * 1 2 3 24 24 H 1.00899 * 111.00070 * 293.90404 * 11 9 7 25 25 H 1.00898 * 110.99962 * 57.85617 * 11 9 7 26 26 H 1.08002 * 120.03471 * 0.02562 * 13 12 9 27 27 H 1.07994 * 119.12577 * 180.29879 * 14 13 12 28 28 H 1.07998 * 119.47632 * 179.97438 * 19 17 16 29 29 H 1.07995 * 119.55260 * 179.97438 * 20 19 17 30 30 H 1.08001 * 120.18026 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6024 1.9854 -1.3947 5 1 1.3975 2.6809 0.5915 6 1 3.4896 1.4731 0.8032 7 6 2.0045 -1.1940 -0.0005 8 1 3.0732 -1.2006 0.1552 9 6 1.2669 -2.4900 -0.2182 10 1 0.4552 -2.5719 0.5047 11 7 0.7147 -2.5164 -1.5792 12 6 2.2176 -3.6454 -0.0393 13 6 2.8484 -4.2082 -1.1125 14 6 3.7276 -5.2718 -0.9227 15 7 3.9703 -5.7621 0.2688 16 6 3.3825 -5.2607 1.3592 17 6 3.6470 -5.7905 2.6357 18 17 4.7512 -7.1177 2.8170 19 6 3.0329 -5.2579 3.7283 20 6 2.1435 -4.1923 3.6050 21 6 1.8629 -3.6536 2.3866 22 6 2.4779 -4.1768 1.2375 23 1 -0.4851 0.8400 0.0004 24 1 0.0009 -1.8126 -1.6936 25 1 1.4442 -2.4067 -2.2676 26 1 2.6692 -3.8258 -2.1065 27 1 4.2228 -5.7037 -1.7797 28 1 3.2385 -5.6679 4.7061 29 1 1.6699 -3.7889 4.4877 30 1 1.1715 -2.8281 2.3042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259559940.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:15 Heat of formation + Delta-G solvation = 37.859535 kcal Electronic energy + Delta-G solvation = -16908.057665 eV Core-core repulsion = 14114.380293 eV Total energy + Delta-G solvation = -2793.677372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.43304 -37.01664 -35.99860 -35.42878 -32.52092 -30.90923 -30.18283 -29.11056 -26.31135 -24.09646 -23.24577 -22.49615 -19.97471 -17.68439 -17.09237 -16.72386 -16.20551 -14.90921 -14.67330 -14.26128 -14.13833 -13.87589 -13.35326 -13.15776 -12.85340 -12.19508 -12.09358 -11.73849 -11.34969 -11.22645 -11.11105 -11.02300 -10.90564 -10.46375 -10.32201 -10.06043 -9.44431 -8.93621 -8.73210 -8.40229 -7.69116 -7.46457 -6.31181 -4.44942 0.80860 1.22635 2.43196 2.45575 3.12314 3.20526 3.23903 3.31703 4.18159 4.55712 4.59702 4.92373 5.04637 5.28023 5.35075 5.48259 5.52479 5.69243 5.83625 5.97077 6.28634 6.29737 6.44703 6.56393 6.67389 6.89753 6.93425 7.21874 7.43272 7.56164 7.83624 8.33342 8.43500 8.61262 8.78964 9.24859 10.69430 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.026420 B = 0.006229 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.560949 B = 4494.073959 C = 4946.808243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.074 3.926 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.057 0.943 9 C 0.236 3.764 10 H 0.065 0.935 11 N -0.848 5.848 12 C 0.041 3.959 13 C -0.187 4.187 14 C 0.139 3.861 15 N -0.494 5.494 16 C 0.132 3.868 17 C -0.027 4.027 18 Cl -0.066 7.066 19 C -0.091 4.091 20 C -0.138 4.138 21 C -0.055 4.055 22 C -0.094 4.094 23 H 0.268 0.732 24 H 0.350 0.650 25 H 0.316 0.684 26 H 0.137 0.863 27 H 0.152 0.848 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -7.451 3.295 9.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.131 4.131 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.075 0.925 9 C 0.126 3.874 10 H 0.082 0.918 11 N -0.377 5.377 12 C 0.033 3.967 13 C -0.207 4.207 14 C -0.032 4.032 15 N -0.203 5.203 16 C 0.010 3.990 17 C -0.054 4.054 18 Cl -0.037 7.037 19 C -0.112 4.112 20 C -0.157 4.157 21 C -0.074 4.074 22 C -0.097 4.097 23 H 0.078 0.922 24 H 0.164 0.836 25 H 0.127 0.873 26 H 0.154 0.846 27 H 0.169 0.831 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.171 -8.919 3.702 10.519 hybrid contribution 0.426 2.602 -0.175 2.642 sum 4.597 -6.318 3.527 8.572 Atomic orbital electron populations 1.69891 1.05855 1.27627 1.48780 1.24979 0.94882 0.99355 0.93872 0.86542 0.79929 0.82691 0.78557 1.20319 1.21005 1.19789 1.21600 0.94735 0.90638 1.52072 0.92474 1.18064 0.91693 0.87843 0.89762 0.91783 1.59498 1.16865 1.56401 1.04893 1.20820 0.92612 0.92791 0.90490 1.21657 0.99574 0.98713 1.00774 1.22878 0.93473 0.92418 0.94400 1.68010 1.24434 1.29521 0.98303 1.18441 0.94983 0.93654 0.91942 1.20343 0.98039 0.94066 0.92966 1.98325 1.61892 1.45882 1.97613 1.20728 0.96468 0.96568 0.97429 1.20740 0.99615 0.97095 0.98217 1.21407 0.97061 0.97787 0.91098 1.18681 0.98982 0.96848 0.95214 0.92224 0.83648 0.87327 0.84568 0.83080 0.85107 0.85154 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.66 12.32 55.43 0.68 -21.97 16 2 C 0.07 1.84 5.31 -17.82 -0.09 1.74 16 3 Si 0.90 19.81 29.55 -169.99 -5.02 14.78 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.55 -13.64 8.64 -34.44 -0.30 -13.94 16 8 H 0.06 1.48 7.76 -52.48 -0.41 1.07 16 9 C 0.24 5.35 2.26 -70.02 -0.16 5.20 16 10 H 0.06 1.59 6.72 -51.93 -0.35 1.24 16 11 N -0.85 -18.08 8.77 -6.65 -0.06 -18.14 16 12 C 0.04 0.86 5.03 -104.27 -0.52 0.33 16 13 C -0.19 -3.43 9.29 -39.78 -0.37 -3.80 16 14 C 0.14 2.35 11.14 -17.47 -0.19 2.16 16 15 N -0.49 -9.29 9.82 -10.95 -0.11 -9.40 16 16 C 0.13 2.55 6.60 -84.82 -0.56 1.99 16 17 C -0.03 -0.46 6.33 -39.39 -0.25 -0.70 16 18 Cl -0.07 -1.02 28.52 -51.86 -1.48 -2.50 16 19 C -0.09 -1.35 9.71 -39.91 -0.39 -1.74 16 20 C -0.14 -2.10 9.95 -39.93 -0.40 -2.50 16 21 C -0.05 -1.00 9.31 -39.51 -0.37 -1.37 16 22 C -0.09 -1.89 5.74 -106.80 -0.61 -2.50 16 23 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 24 H 0.35 7.95 7.95 -39.29 -0.31 7.63 16 25 H 0.32 6.30 7.38 -39.29 -0.29 6.01 16 26 H 0.14 2.29 6.42 -52.49 -0.34 1.95 16 27 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 29 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.15 2.81 6.56 -52.49 -0.34 2.47 16 LS Contribution 274.92 15.07 4.14 4.14 Total: -1.00 -26.55 274.92 -8.50 -35.05 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -2.44 Total: 13.17 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -4.21 Total: -15.14 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.52 Total: -49.51 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.48 Total: -2.50 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.55 -8.50 -35.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259559940.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.907 kcal (2) G-P(sol) polarization free energy of solvation -26.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds