Wall clock time and date at job start Mon Mar 30 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99738 * 2 1 4 4 H 1.48501 * 109.47200 * 264.99288 * 3 2 1 5 5 H 1.48501 * 109.47095 * 24.99316 * 3 2 1 6 6 H 1.48498 * 109.47228 * 144.99156 * 3 2 1 7 7 C 1.37875 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99769 * 189.58277 * 7 2 1 9 9 C 1.50694 * 120.00474 * 9.57626 * 7 2 1 10 10 H 1.09003 * 109.47189 * 305.50095 * 9 7 2 11 11 N 1.46900 * 109.46935 * 65.49318 * 9 7 2 12 12 C 1.50697 * 109.47499 * 185.49572 * 9 7 2 13 13 C 1.36614 * 120.92353 * 265.00029 * 12 9 7 14 14 C 1.39293 * 119.93276 * 179.72046 * 13 12 9 15 15 N 1.31111 * 121.74793 * 0.27961 * 14 13 12 16 16 C 1.33634 * 121.31907 * 359.97438 * 15 14 13 17 17 C 1.40717 * 121.08504 * 180.02562 * 16 15 14 18 18 Cl 1.73600 * 120.13593 * 359.96380 * 17 16 15 19 19 C 1.36180 * 119.72739 * 179.97438 * 17 16 15 20 20 C 1.39344 * 121.05565 * 359.97438 * 19 17 16 21 21 C 1.36138 * 120.88688 * 0.02829 * 20 19 17 22 22 C 1.40439 * 119.64513 * 359.94686 * 21 20 19 23 23 H 0.96999 * 120.00375 * 359.97438 * 1 2 3 24 24 H 1.00899 * 111.00070 * 293.90404 * 11 9 7 25 25 H 1.00898 * 110.99962 * 57.85617 * 11 9 7 26 26 H 1.08002 * 120.03471 * 0.02562 * 13 12 9 27 27 H 1.07994 * 119.12577 * 180.29879 * 14 13 12 28 28 H 1.07998 * 119.47632 * 179.97438 * 19 17 16 29 29 H 1.07995 * 119.55260 * 179.97438 * 20 19 17 30 30 H 1.08001 * 120.18026 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6024 1.9854 -1.3947 5 1 1.3975 2.6809 0.5915 6 1 3.4896 1.4731 0.8032 7 6 2.0045 -1.1940 -0.0005 8 1 3.0732 -1.2006 0.1552 9 6 1.2669 -2.4900 -0.2182 10 1 0.4552 -2.5719 0.5047 11 7 0.7147 -2.5164 -1.5792 12 6 2.2176 -3.6454 -0.0393 13 6 2.8484 -4.2082 -1.1125 14 6 3.7276 -5.2718 -0.9227 15 7 3.9703 -5.7621 0.2688 16 6 3.3825 -5.2607 1.3592 17 6 3.6470 -5.7905 2.6357 18 17 4.7512 -7.1177 2.8170 19 6 3.0329 -5.2579 3.7283 20 6 2.1435 -4.1923 3.6050 21 6 1.8629 -3.6536 2.3866 22 6 2.4779 -4.1768 1.2375 23 1 -0.4851 0.8400 0.0004 24 1 0.0009 -1.8126 -1.6936 25 1 1.4442 -2.4067 -2.2676 26 1 2.6692 -3.8258 -2.1065 27 1 4.2228 -5.7037 -1.7797 28 1 3.2385 -5.6679 4.7061 29 1 1.6699 -3.7889 4.4877 30 1 1.1715 -2.8281 2.3042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259559940.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:15 Heat of formation + Delta-G solvation = 22.021106 kcal Electronic energy + Delta-G solvation = -16908.744471 eV Core-core repulsion = 14114.380293 eV Total energy + Delta-G solvation = -2794.364178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.81836 -38.35310 -37.30477 -37.04405 -34.25554 -32.52325 -31.53227 -30.51067 -28.14214 -25.65700 -24.61075 -23.98903 -21.50085 -19.03636 -18.66557 -18.45282 -17.63921 -16.59700 -16.20070 -15.68002 -15.55046 -15.26421 -14.82323 -14.77140 -14.36965 -13.81967 -13.49119 -13.23393 -13.00349 -12.84086 -12.70370 -12.42061 -12.35678 -12.08757 -11.83569 -11.72903 -10.96623 -10.60533 -10.38384 -9.74177 -9.33585 -9.00936 -8.20764 -6.41729 -0.56034 -0.12227 1.01545 1.15726 1.35378 1.39758 1.47093 2.00824 2.34360 3.00198 3.14813 3.32241 3.69942 3.90690 4.03602 4.06396 4.24579 4.38437 4.46560 4.53868 4.81064 4.93634 5.02659 5.17395 5.22774 5.39361 5.55425 5.59382 5.80009 5.86601 5.98039 6.58887 6.73703 6.94336 7.01258 7.30837 8.77032 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.026420 B = 0.006229 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.560949 B = 4494.073959 C = 4946.808243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.037 3.963 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.041 0.959 9 C 0.246 3.754 10 H 0.033 0.967 11 N -0.839 5.839 12 C 0.009 3.991 13 C -0.185 4.185 14 C 0.140 3.860 15 N -0.502 5.502 16 C 0.111 3.889 17 C -0.040 4.040 18 Cl -0.052 7.052 19 C -0.080 4.080 20 C -0.117 4.117 21 C -0.085 4.085 22 C -0.112 4.112 23 H 0.269 0.731 24 H 0.341 0.659 25 H 0.325 0.675 26 H 0.148 0.852 27 H 0.193 0.807 28 H 0.170 0.830 29 H 0.166 0.834 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.004 -8.154 3.985 10.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.165 4.165 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.597 4.597 8 H 0.059 0.941 9 C 0.136 3.864 10 H 0.051 0.949 11 N -0.367 5.367 12 C 0.001 3.999 13 C -0.205 4.205 14 C -0.031 4.031 15 N -0.211 5.211 16 C -0.011 4.011 17 C -0.068 4.068 18 Cl -0.023 7.023 19 C -0.100 4.100 20 C -0.135 4.135 21 C -0.103 4.103 22 C -0.115 4.115 23 H 0.079 0.921 24 H 0.153 0.847 25 H 0.136 0.864 26 H 0.166 0.834 27 H 0.210 0.790 28 H 0.187 0.813 29 H 0.183 0.817 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.267 -9.632 4.392 11.824 hybrid contribution 0.111 2.738 -0.332 2.760 sum 5.378 -6.894 4.060 9.640 Atomic orbital electron populations 1.69971 1.06755 1.28200 1.49413 1.25558 0.95503 1.01776 0.93695 0.85702 0.78559 0.79651 0.78513 1.19784 1.20659 1.20313 1.21707 0.93993 0.92031 1.51948 0.94064 1.17757 0.91021 0.88234 0.89369 0.94891 1.59452 1.16808 1.55767 1.04660 1.20732 0.93808 0.93366 0.92017 1.21870 0.99186 0.98779 1.00616 1.23443 0.92851 0.91662 0.95118 1.68076 1.24520 1.29706 0.98812 1.18733 0.95330 0.93912 0.93116 1.20564 0.98683 0.94705 0.92811 1.98325 1.61392 1.45095 1.97498 1.21148 0.94826 0.95485 0.98506 1.21131 0.98284 0.96025 0.98069 1.21354 0.98140 0.98540 0.92316 1.18851 0.99722 0.97539 0.95400 0.92145 0.84667 0.86368 0.83398 0.79042 0.81266 0.81680 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.17 12.32 21.45 0.26 -46.91 16 2 C 0.04 1.87 5.31 84.65 0.45 2.32 16 3 Si 0.95 40.82 29.55 68.60 2.03 42.84 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.56 -28.27 8.64 25.60 0.22 -28.04 16 8 H 0.04 2.18 7.76 -2.91 -0.02 2.16 16 9 C 0.25 11.54 2.26 43.42 0.10 11.64 16 10 H 0.03 1.74 6.72 -2.39 -0.02 1.72 16 11 N -0.84 -36.45 8.77 -174.96 -1.53 -37.98 16 12 C 0.01 0.39 5.03 -19.64 -0.10 0.29 16 13 C -0.18 -6.69 9.29 22.14 0.21 -6.49 16 14 C 0.14 4.54 11.14 85.05 0.95 5.49 16 15 N -0.50 -18.27 9.82 -188.57 -1.85 -20.12 16 16 C 0.11 4.20 6.60 40.33 0.27 4.47 16 17 C -0.04 -1.29 6.33 22.40 0.14 -1.15 16 18 Cl -0.05 -1.49 28.52 -2.72 -0.08 -1.57 16 19 C -0.08 -2.13 9.71 22.06 0.21 -1.92 16 20 C -0.12 -3.34 9.95 22.05 0.22 -3.12 16 21 C -0.08 -3.14 9.31 22.32 0.21 -2.93 16 22 C -0.11 -4.55 5.74 -21.28 -0.12 -4.67 16 23 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 24 H 0.34 15.85 7.95 -89.69 -0.71 15.13 16 25 H 0.33 13.00 7.38 -89.70 -0.66 12.34 16 26 H 0.15 4.85 6.42 -2.91 -0.02 4.83 16 27 H 0.19 4.46 8.06 -2.91 -0.02 4.43 16 28 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.13 5.12 6.56 -2.91 -0.02 5.10 16 Total: -1.00 -57.52 274.92 1.41 -56.11 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -0.17 Total: 31.75 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 2.75 Total: -24.12 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -3.12 Total: -105.01 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -57.52 1.41 -56.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259559940.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.132 kcal (2) G-P(sol) polarization free energy of solvation -57.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds