Wall clock time and date at job start Mon Mar 30 2020 06:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99834 * 2 1 4 4 H 1.48495 * 109.47561 * 270.00268 * 3 2 1 5 5 H 1.48501 * 109.47099 * 30.00597 * 3 2 1 6 6 H 1.48501 * 109.46644 * 149.99914 * 3 2 1 7 7 C 1.37872 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00370 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99686 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47235 * 60.00377 * 9 7 2 11 11 N 1.46897 * 109.47110 * 299.99670 * 9 7 2 12 12 C 1.50707 * 109.46811 * 180.02562 * 9 7 2 13 13 C 1.36606 * 120.92623 * 100.00255 * 12 9 7 14 14 C 1.39288 * 119.93566 * 180.02562 * 13 12 9 15 15 N 1.31114 * 121.74434 * 359.97318 * 14 13 12 16 16 C 1.33626 * 121.32094 * 0.02562 * 15 14 13 17 17 C 1.40718 * 121.07669 * 180.02562 * 16 15 14 18 18 Cl 1.73598 * 120.14115 * 359.95318 * 17 16 15 19 19 C 1.36189 * 119.72215 * 179.97438 * 17 16 15 20 20 C 1.39342 * 121.05155 * 0.02562 * 19 17 16 21 21 C 1.36139 * 120.89179 * 0.02562 * 20 19 17 22 22 C 1.40440 * 119.64227 * 359.94698 * 21 20 19 23 23 H 0.96999 * 119.99912 * 359.97438 * 1 2 3 24 24 H 1.00899 * 111.00023 * 176.04411 * 11 9 7 25 25 H 1.00902 * 111.00353 * 300.00395 * 11 9 7 26 26 H 1.08004 * 120.03100 * 0.02562 * 13 12 9 27 27 H 1.08003 * 119.12889 * 180.24812 * 14 13 12 28 28 H 1.07993 * 119.46992 * 179.97438 * 19 17 16 29 29 H 1.08002 * 119.54877 * 179.97438 * 20 19 17 30 30 H 1.08007 * 120.17642 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.5319 -4.3104 1.1535 14 6 3.4405 -5.3659 1.1299 15 7 4.0250 -5.7483 0.0203 16 6 3.7742 -5.1394 -1.1425 17 6 4.4040 -5.5544 -2.3304 18 17 5.5290 -6.8763 -2.3048 19 6 4.1275 -4.9144 -3.5004 20 6 3.2285 -3.8506 -3.5427 21 6 2.6009 -3.4205 -2.4138 22 6 2.8609 -4.0570 -1.1892 23 1 -0.4850 0.8400 0.0004 24 1 -0.1570 -3.4138 1.1907 25 1 0.9653 -2.5260 2.0381 26 1 2.0662 -4.0188 2.0833 27 1 3.6664 -5.8859 2.0492 28 1 4.6135 -5.2360 -4.4096 29 1 3.0276 -3.3602 -4.4838 30 1 1.9058 -2.5951 -2.4599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259559942.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:17 Heat of formation + Delta-G solvation = 47.051107 kcal Electronic energy + Delta-G solvation = -16922.819138 eV Core-core repulsion = 14129.540342 eV Total energy + Delta-G solvation = -2793.278796 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.52784 -37.10859 -36.05263 -35.43442 -32.34509 -31.00659 -30.25795 -29.09250 -26.39323 -24.06861 -23.29636 -22.41576 -20.06087 -17.76522 -17.05065 -16.61908 -16.25167 -14.82176 -14.60280 -14.28748 -14.22345 -14.01971 -13.76657 -13.20291 -12.67294 -12.41082 -12.15335 -11.77833 -11.39712 -11.16916 -11.08437 -10.89398 -10.87480 -10.52351 -10.18759 -9.82348 -9.11488 -9.06037 -8.58424 -8.49288 -7.70569 -7.33955 -6.04992 -4.22192 0.73061 1.13467 2.36228 2.38109 3.22611 3.24274 3.32311 3.35951 4.32658 4.47604 4.52225 4.97332 5.17704 5.20327 5.30487 5.40029 5.46803 5.62844 5.71103 5.92826 6.12958 6.20980 6.32172 6.43794 6.55346 6.81776 6.90706 7.13840 7.21975 7.73187 7.93861 8.24625 8.41199 8.78651 8.93261 9.48116 10.98840 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.025910 B = 0.006353 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.421543 B = 4406.497920 C = 4941.434251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.088 3.912 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.252 3.748 10 H 0.058 0.942 11 N -0.808 5.808 12 C -0.001 4.001 13 C -0.208 4.208 14 C 0.142 3.858 15 N -0.492 5.492 16 C 0.132 3.868 17 C -0.029 4.029 18 Cl -0.065 7.065 19 C -0.089 4.089 20 C -0.138 4.138 21 C -0.052 4.052 22 C -0.093 4.093 23 H 0.259 0.741 24 H 0.301 0.699 25 H 0.321 0.679 26 H 0.132 0.868 27 H 0.152 0.848 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -8.904 -3.589 10.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.120 4.120 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.142 3.858 10 H 0.075 0.925 11 N -0.335 5.335 12 C -0.011 4.011 13 C -0.228 4.228 14 C -0.029 4.029 15 N -0.201 5.201 16 C 0.010 3.990 17 C -0.056 4.056 18 Cl -0.037 7.037 19 C -0.110 4.110 20 C -0.157 4.157 21 C -0.071 4.071 22 C -0.096 4.096 23 H 0.069 0.931 24 H 0.112 0.888 25 H 0.135 0.865 26 H 0.150 0.850 27 H 0.169 0.831 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.192 -8.921 -3.929 11.044 hybrid contribution 0.635 0.635 0.362 0.969 sum 5.827 -8.286 -3.566 10.739 Atomic orbital electron populations 1.70087 1.05679 1.26126 1.45731 1.24911 0.94663 0.98598 0.93852 0.86709 0.80033 0.83678 0.78207 1.20555 1.21083 1.19941 1.20686 0.92192 0.88780 1.55641 0.92731 1.18341 0.87397 0.88437 0.91596 0.92484 1.59136 1.27801 1.42246 1.04291 1.22313 0.93916 0.94084 0.90796 1.21686 1.02380 0.99070 0.99684 1.22830 0.91064 0.93121 0.95852 1.68021 1.24988 1.29183 0.97936 1.18513 0.95210 0.93484 0.91800 1.20358 0.97432 0.94268 0.93544 1.98328 1.60034 1.46456 1.98835 1.20757 0.98098 0.95751 0.96373 1.20774 0.98202 0.97476 0.99222 1.21448 0.97375 0.97581 0.90702 1.18720 0.98613 0.96684 0.95543 0.93132 0.88776 0.86530 0.85036 0.83078 0.85046 0.85040 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.84 12.77 55.43 0.71 -22.13 16 2 C 0.09 2.28 5.39 -17.82 -0.10 2.18 16 3 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -13.51 8.46 -34.44 -0.29 -13.80 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.25 5.67 2.22 -70.01 -0.16 5.51 16 10 H 0.06 1.39 7.08 -51.93 -0.37 1.02 16 11 N -0.81 -17.23 8.03 -6.65 -0.05 -17.29 16 12 C 0.00 -0.01 5.05 -104.27 -0.53 -0.54 16 13 C -0.21 -3.63 9.27 -39.78 -0.37 -4.00 16 14 C 0.14 2.33 11.14 -17.47 -0.19 2.14 16 15 N -0.49 -9.04 9.82 -10.96 -0.11 -9.15 16 16 C 0.13 2.49 6.60 -84.83 -0.56 1.93 16 17 C -0.03 -0.48 6.33 -39.38 -0.25 -0.73 16 18 Cl -0.07 -0.99 28.52 -51.86 -1.48 -2.47 16 19 C -0.09 -1.29 9.71 -39.91 -0.39 -1.67 16 20 C -0.14 -2.03 9.95 -39.93 -0.40 -2.43 16 21 C -0.05 -0.93 9.23 -39.51 -0.36 -1.29 16 22 C -0.09 -1.79 5.74 -106.81 -0.61 -2.41 16 23 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 24 H 0.30 5.70 9.06 -39.29 -0.36 5.34 16 25 H 0.32 6.49 7.35 -39.29 -0.29 6.21 16 26 H 0.13 2.06 6.32 -52.48 -0.33 1.73 16 27 H 0.15 1.91 8.06 -52.48 -0.42 1.49 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.15 2.77 6.56 -52.48 -0.34 2.43 16 LS Contribution 275.70 15.07 4.15 4.15 Total: -1.00 -28.39 275.70 -8.50 -36.89 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -2.50 Total: 9.85 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -4.20 Total: -15.11 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.55 Total: -48.57 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.48 Total: -2.47 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.39 -8.50 -36.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259559942.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.941 kcal (2) G-P(sol) polarization free energy of solvation -28.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds