Wall clock time and date at job start Mon Mar 30 2020 06:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99834 * 2 1 4 4 H 1.48495 * 109.47561 * 270.00268 * 3 2 1 5 5 H 1.48501 * 109.47099 * 30.00597 * 3 2 1 6 6 H 1.48501 * 109.46644 * 149.99914 * 3 2 1 7 7 C 1.37872 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00370 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99686 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47235 * 60.00377 * 9 7 2 11 11 N 1.46897 * 109.47110 * 299.99670 * 9 7 2 12 12 C 1.50707 * 109.46811 * 180.02562 * 9 7 2 13 13 C 1.36606 * 120.92623 * 100.00255 * 12 9 7 14 14 C 1.39288 * 119.93566 * 180.02562 * 13 12 9 15 15 N 1.31114 * 121.74434 * 359.97318 * 14 13 12 16 16 C 1.33626 * 121.32094 * 0.02562 * 15 14 13 17 17 C 1.40718 * 121.07669 * 180.02562 * 16 15 14 18 18 Cl 1.73598 * 120.14115 * 359.95318 * 17 16 15 19 19 C 1.36189 * 119.72215 * 179.97438 * 17 16 15 20 20 C 1.39342 * 121.05155 * 0.02562 * 19 17 16 21 21 C 1.36139 * 120.89179 * 0.02562 * 20 19 17 22 22 C 1.40440 * 119.64227 * 359.94698 * 21 20 19 23 23 H 0.96999 * 119.99912 * 359.97438 * 1 2 3 24 24 H 1.00899 * 111.00023 * 176.04411 * 11 9 7 25 25 H 1.00902 * 111.00353 * 300.00395 * 11 9 7 26 26 H 1.08004 * 120.03100 * 0.02562 * 13 12 9 27 27 H 1.08003 * 119.12889 * 180.24812 * 14 13 12 28 28 H 1.07993 * 119.46992 * 179.97438 * 19 17 16 29 29 H 1.08002 * 119.54877 * 179.97438 * 20 19 17 30 30 H 1.08007 * 120.17642 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.5319 -4.3104 1.1535 14 6 3.4405 -5.3659 1.1299 15 7 4.0250 -5.7483 0.0203 16 6 3.7742 -5.1394 -1.1425 17 6 4.4040 -5.5544 -2.3304 18 17 5.5290 -6.8763 -2.3048 19 6 4.1275 -4.9144 -3.5004 20 6 3.2285 -3.8506 -3.5427 21 6 2.6009 -3.4205 -2.4138 22 6 2.8609 -4.0570 -1.1892 23 1 -0.4850 0.8400 0.0004 24 1 -0.1570 -3.4138 1.1907 25 1 0.9653 -2.5260 2.0381 26 1 2.0662 -4.0188 2.0833 27 1 3.6664 -5.8859 2.0492 28 1 4.6135 -5.2360 -4.4096 29 1 3.0276 -3.3602 -4.4838 30 1 1.9058 -2.5951 -2.4599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259559942.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:17 Heat of formation + Delta-G solvation = 29.484649 kcal Electronic energy + Delta-G solvation = -16923.580877 eV Core-core repulsion = 14129.540342 eV Total energy + Delta-G solvation = -2794.040535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.87284 -38.40803 -37.31209 -37.01088 -34.15244 -32.55637 -31.57058 -30.46010 -28.23747 -25.58716 -24.62573 -23.90766 -21.56766 -19.08018 -18.56073 -18.33969 -17.63439 -16.58506 -16.17641 -15.70410 -15.56904 -15.45617 -15.09457 -14.64661 -14.23181 -14.09640 -13.46454 -13.29064 -12.81161 -12.75752 -12.69294 -12.42463 -12.35157 -11.98667 -11.75875 -11.56527 -10.75033 -10.53917 -10.48016 -9.78508 -9.10153 -8.97265 -8.02589 -6.24309 -0.59885 -0.16867 0.97011 1.14104 1.41508 1.45157 1.52677 1.96829 2.44570 3.10039 3.21534 3.28529 3.73237 3.86193 3.99333 4.04121 4.23193 4.34316 4.40431 4.46419 4.70178 4.92972 4.98254 5.06903 5.21043 5.38532 5.52331 5.65459 5.71277 5.82711 6.09154 6.58949 6.89937 7.03439 7.19429 7.48446 9.00360 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.025910 B = 0.006353 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.421543 B = 4406.497920 C = 4941.434251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.040 0.960 9 C 0.263 3.737 10 H 0.028 0.972 11 N -0.818 5.818 12 C -0.028 4.028 13 C -0.201 4.201 14 C 0.142 3.858 15 N -0.502 5.502 16 C 0.111 3.889 17 C -0.042 4.042 18 Cl -0.053 7.053 19 C -0.078 4.078 20 C -0.118 4.118 21 C -0.082 4.082 22 C -0.110 4.110 23 H 0.258 0.742 24 H 0.315 0.685 25 H 0.328 0.672 26 H 0.147 0.853 27 H 0.192 0.808 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 -9.681 -4.130 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.159 4.159 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.058 0.942 9 C 0.153 3.847 10 H 0.046 0.954 11 N -0.346 5.346 12 C -0.039 4.039 13 C -0.221 4.221 14 C -0.029 4.029 15 N -0.211 5.211 16 C -0.011 4.011 17 C -0.070 4.070 18 Cl -0.024 7.024 19 C -0.098 4.098 20 C -0.136 4.136 21 C -0.100 4.100 22 C -0.113 4.113 23 H 0.067 0.933 24 H 0.127 0.873 25 H 0.141 0.859 26 H 0.165 0.835 27 H 0.209 0.791 28 H 0.187 0.813 29 H 0.184 0.816 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.489 -9.706 -4.477 12.504 hybrid contribution 0.283 0.778 0.483 0.959 sum 6.773 -8.928 -3.994 11.897 Atomic orbital electron populations 1.70187 1.06771 1.26593 1.47217 1.25512 0.95294 1.01252 0.93813 0.85848 0.78678 0.80484 0.78230 1.20009 1.20938 1.20185 1.20851 0.91603 0.90417 1.54731 0.94205 1.17894 0.87426 0.88599 0.90794 0.95394 1.58950 1.28159 1.43368 1.04163 1.22053 0.94859 0.94553 0.92407 1.21904 1.02071 0.98766 0.99386 1.23400 0.90070 0.92670 0.96768 1.68080 1.25304 1.29353 0.98365 1.18792 0.95765 0.93733 0.92833 1.20583 0.97789 0.94995 0.93631 1.98327 1.59455 1.45807 1.98817 1.21169 0.97068 0.94542 0.97030 1.21161 0.96292 0.96657 0.99454 1.21403 0.98768 0.98177 0.91691 1.18881 0.99120 0.97392 0.95885 0.93298 0.87279 0.85858 0.83544 0.79147 0.81313 0.81585 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.12 12.77 21.45 0.27 -47.84 16 2 C 0.05 2.43 5.39 84.65 0.46 2.88 16 3 Si 0.94 42.00 29.54 68.60 2.03 44.03 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -27.76 8.46 25.60 0.22 -27.54 16 8 H 0.04 2.13 7.74 -2.91 -0.02 2.11 16 9 C 0.26 12.16 2.22 43.43 0.10 12.25 16 10 H 0.03 1.45 7.08 -2.39 -0.02 1.43 16 11 N -0.82 -35.34 8.03 -174.95 -1.41 -36.75 16 12 C -0.03 -1.14 5.05 -19.63 -0.10 -1.24 16 13 C -0.20 -6.89 9.27 22.14 0.21 -6.69 16 14 C 0.14 4.42 11.14 85.05 0.95 5.36 16 15 N -0.50 -17.75 9.82 -188.58 -1.85 -19.61 16 16 C 0.11 4.07 6.60 40.33 0.27 4.33 16 17 C -0.04 -1.34 6.33 22.40 0.14 -1.19 16 18 Cl -0.05 -1.49 28.52 -2.72 -0.08 -1.57 16 19 C -0.08 -2.02 9.71 22.06 0.21 -1.81 16 20 C -0.12 -3.22 9.95 22.05 0.22 -3.00 16 21 C -0.08 -2.91 9.23 22.32 0.21 -2.71 16 22 C -0.11 -4.29 5.74 -21.28 -0.12 -4.41 16 23 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 24 H 0.32 12.02 9.06 -89.69 -0.81 11.21 16 25 H 0.33 13.25 7.35 -89.69 -0.66 12.59 16 26 H 0.15 4.43 6.32 -2.91 -0.02 4.42 16 27 H 0.19 4.24 8.06 -2.91 -0.02 4.21 16 28 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16 30 H 0.13 5.08 6.56 -2.91 -0.02 5.06 16 Total: -1.00 -61.32 275.70 1.44 -59.88 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.27 Total: 25.63 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 2.75 Total: -23.76 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -2.98 Total: -104.20 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -61.32 1.44 -59.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259559942.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.361 kcal (2) G-P(sol) polarization free energy of solvation -61.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds