Wall clock time and date at job start Mon Mar 30 2020 06:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99800 * 2 1 4 4 H 1.48494 * 109.47236 * 270.00458 * 3 2 1 5 5 H 1.48502 * 109.46994 * 30.00620 * 3 2 1 6 6 H 1.48500 * 109.46809 * 150.00074 * 3 2 1 7 7 C 1.37873 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00661 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99921 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46830 * 300.00391 * 9 7 2 11 11 N 1.46903 * 109.47221 * 59.99890 * 9 7 2 12 12 C 1.50694 * 109.47644 * 180.02562 * 9 7 2 13 13 C 1.39335 * 120.03044 * 279.98157 * 12 9 7 14 14 N 1.31081 * 121.75164 * 180.02562 * 13 12 9 15 15 C 1.33685 * 121.32126 * 359.62688 * 14 13 12 16 16 C 1.40606 * 121.05370 * 179.74455 * 15 14 13 17 17 C 1.36057 * 119.76805 * 180.34474 * 16 15 14 18 18 C 1.39472 * 121.04848 * 0.25554 * 17 16 15 19 19 Cl 1.73600 * 119.57993 * 180.02562 * 18 17 16 20 20 C 1.36249 * 120.84560 * 0.04571 * 18 17 16 21 21 C 1.40411 * 119.60464 * 359.97438 * 20 18 17 22 22 C 1.36576 * 120.03686 * 99.99549 * 12 9 7 23 23 H 0.96995 * 120.00580 * 359.97438 * 1 2 3 24 24 H 1.00897 * 110.99831 * 296.05167 * 11 9 7 25 25 H 1.00900 * 110.99775 * 60.00472 * 11 9 7 26 26 H 1.07999 * 119.12524 * 0.02562 * 13 12 9 27 27 H 1.08002 * 120.11909 * 0.62575 * 16 15 14 28 28 H 1.07998 * 119.47664 * 180.28135 * 17 16 15 29 29 H 1.07992 * 120.20056 * 179.97438 * 20 18 17 30 30 H 1.07999 * 120.91791 * 0.02562 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6249 -2.5570 0.8896 11 7 0.4062 -2.5768 -1.1997 12 6 2.2305 -3.6445 -0.0005 13 6 2.8425 -4.0387 -1.1886 14 7 3.6988 -5.0304 -1.2274 15 6 4.0300 -5.7063 -0.1226 16 6 4.9451 -6.7727 -0.1716 17 6 5.2581 -7.4471 0.9678 18 6 4.6809 -7.1019 2.1896 19 17 5.1084 -7.9879 3.6200 20 6 3.7856 -6.0785 2.2750 21 6 3.4395 -5.3614 1.1185 22 6 2.5187 -4.2975 1.1639 23 1 -0.4851 0.8400 0.0004 24 1 -0.3012 -1.8573 -1.1907 25 1 0.9638 -2.5252 -2.0390 26 1 2.6052 -3.5131 -2.1017 27 1 5.4014 -7.0525 -1.1097 28 1 5.9650 -8.2625 0.9255 29 1 3.3447 -5.8203 3.2264 30 1 2.0531 -4.0057 2.0936 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259561672.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:52 Heat of formation + Delta-G solvation = 35.408408 kcal Electronic energy + Delta-G solvation = -16440.620012 eV Core-core repulsion = 13646.836351 eV Total energy + Delta-G solvation = -2793.783661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52520 -37.55947 -36.20327 -34.80078 -33.00313 -31.56181 -29.73070 -29.34585 -26.12515 -23.97276 -23.67824 -21.96582 -20.91518 -17.77624 -17.16330 -16.57894 -16.45184 -14.96915 -14.52547 -14.40567 -14.18170 -14.12799 -13.43260 -13.03995 -12.68212 -12.58235 -12.51267 -12.00759 -11.51786 -11.40941 -11.05368 -11.01110 -10.81286 -10.73833 -10.29601 -10.12495 -9.94462 -9.05327 -8.75959 -8.24252 -7.99137 -7.36437 -6.23774 -4.41807 0.59966 1.07562 2.10939 2.29526 3.08179 3.14929 3.23059 3.27232 4.20713 4.45316 4.57741 4.76289 4.96208 5.03287 5.14541 5.26755 5.47813 5.50736 5.82841 5.92795 6.08624 6.18253 6.24748 6.37311 6.47858 6.70894 6.75170 7.14382 7.44403 7.59744 7.88857 8.28136 8.49146 8.74983 8.93896 9.31195 10.74065 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.030364 B = 0.004686 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.922308 B = 5974.011659 C = 6288.762233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.070 3.930 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.057 0.943 9 C 0.243 3.757 10 H 0.053 0.947 11 N -0.850 5.850 12 C -0.067 4.067 13 C 0.160 3.840 14 N -0.486 5.486 15 C 0.110 3.890 16 C -0.073 4.073 17 C -0.114 4.114 18 C -0.040 4.040 19 Cl -0.081 7.081 20 C -0.082 4.082 21 C -0.087 4.087 22 C -0.078 4.078 23 H 0.268 0.732 24 H 0.360 0.640 25 H 0.312 0.688 26 H 0.159 0.841 27 H 0.139 0.861 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.985 -11.216 2.614 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.133 4.133 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.075 0.925 9 C 0.132 3.868 10 H 0.070 0.930 11 N -0.381 5.381 12 C -0.069 4.069 13 C -0.012 4.012 14 N -0.194 5.194 15 C -0.012 4.012 16 C -0.092 4.092 17 C -0.134 4.134 18 C -0.066 4.066 19 Cl -0.052 7.052 20 C -0.102 4.102 21 C -0.090 4.090 22 C -0.104 4.104 23 H 0.078 0.922 24 H 0.176 0.824 25 H 0.122 0.878 26 H 0.176 0.824 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.083 -12.227 2.269 14.311 hybrid contribution 0.488 2.199 0.827 2.399 sum 7.571 -10.028 3.095 12.941 Atomic orbital electron populations 1.69723 1.05880 1.27552 1.49705 1.24998 0.94951 0.99402 0.93972 0.86477 0.79872 0.82679 0.78345 1.20421 1.20963 1.19808 1.21749 0.93651 0.90756 1.52882 0.92512 1.18012 0.88802 0.87632 0.92358 0.92955 1.59545 1.18394 1.56383 1.03766 1.21296 0.96779 0.96085 0.92760 1.22914 0.89172 0.90687 0.98445 1.68075 1.14594 1.07696 1.28991 1.18892 0.97111 0.96316 0.88879 1.20685 0.96397 0.93705 0.98374 1.20581 1.01080 1.01201 0.90589 1.20505 1.01075 0.97028 0.88038 1.98351 1.92619 1.75292 1.38936 1.20861 0.96678 0.94162 0.98492 1.18701 0.98855 0.97656 0.93748 1.21273 0.96276 0.93437 0.99399 0.92210 0.82352 0.87825 0.82375 0.84361 0.84929 0.84589 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.16 11.54 55.43 0.64 -22.52 16 2 C 0.07 1.78 5.38 -17.82 -0.10 1.69 16 3 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.55 -13.86 8.71 -34.44 -0.30 -14.16 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.24 5.58 2.95 -70.02 -0.21 5.38 16 10 H 0.05 1.31 8.00 -51.93 -0.42 0.90 16 11 N -0.85 -18.73 9.02 -6.65 -0.06 -18.79 16 12 C -0.07 -1.35 4.87 -104.82 -0.51 -1.86 16 13 C 0.16 3.07 10.43 -17.46 -0.18 2.89 16 14 N -0.49 -9.04 10.34 -10.97 -0.11 -9.15 16 15 C 0.11 1.90 6.60 -84.85 -0.56 1.34 16 16 C -0.07 -1.03 9.98 -39.47 -0.39 -1.42 16 17 C -0.11 -1.43 9.72 -39.91 -0.39 -1.81 16 18 C -0.04 -0.53 6.28 -39.84 -0.25 -0.78 16 19 Cl -0.08 -0.94 28.92 -51.86 -1.50 -2.44 16 20 C -0.08 -1.19 9.52 -39.48 -0.38 -1.57 16 21 C -0.09 -1.48 5.74 -106.80 -0.61 -2.10 16 22 C -0.08 -1.43 9.50 -39.22 -0.37 -1.80 16 23 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 24 H 0.36 8.54 7.08 -39.29 -0.28 8.27 16 25 H 0.31 6.42 7.32 -39.29 -0.29 6.13 16 26 H 0.16 2.85 6.63 -52.49 -0.35 2.50 16 27 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.14 2.30 8.05 -52.49 -0.42 1.88 16 LS Contribution 277.65 15.07 4.18 4.18 Total: -1.00 -26.16 277.65 -8.68 -34.84 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -2.56 Total: 13.07 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -4.25 Total: -14.21 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.47 Total: -50.47 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.16 -8.68 -34.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259561672.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.252 kcal (2) G-P(sol) polarization free energy of solvation -26.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds