Wall clock time and date at job start Mon Mar 30 2020 06:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99800 * 2 1 4 4 H 1.48494 * 109.47236 * 270.00458 * 3 2 1 5 5 H 1.48502 * 109.46994 * 30.00620 * 3 2 1 6 6 H 1.48500 * 109.46809 * 150.00074 * 3 2 1 7 7 C 1.37873 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00661 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99921 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46830 * 300.00391 * 9 7 2 11 11 N 1.46903 * 109.47221 * 59.99890 * 9 7 2 12 12 C 1.50694 * 109.47644 * 180.02562 * 9 7 2 13 13 C 1.39335 * 120.03044 * 279.98157 * 12 9 7 14 14 N 1.31081 * 121.75164 * 180.02562 * 13 12 9 15 15 C 1.33685 * 121.32126 * 359.62688 * 14 13 12 16 16 C 1.40606 * 121.05370 * 179.74455 * 15 14 13 17 17 C 1.36057 * 119.76805 * 180.34474 * 16 15 14 18 18 C 1.39472 * 121.04848 * 0.25554 * 17 16 15 19 19 Cl 1.73600 * 119.57993 * 180.02562 * 18 17 16 20 20 C 1.36249 * 120.84560 * 0.04571 * 18 17 16 21 21 C 1.40411 * 119.60464 * 359.97438 * 20 18 17 22 22 C 1.36576 * 120.03686 * 99.99549 * 12 9 7 23 23 H 0.96995 * 120.00580 * 359.97438 * 1 2 3 24 24 H 1.00897 * 110.99831 * 296.05167 * 11 9 7 25 25 H 1.00900 * 110.99775 * 60.00472 * 11 9 7 26 26 H 1.07999 * 119.12524 * 0.02562 * 13 12 9 27 27 H 1.08002 * 120.11909 * 0.62575 * 16 15 14 28 28 H 1.07998 * 119.47664 * 180.28135 * 17 16 15 29 29 H 1.07992 * 120.20056 * 179.97438 * 20 18 17 30 30 H 1.07999 * 120.91791 * 0.02562 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6249 -2.5570 0.8896 11 7 0.4062 -2.5768 -1.1997 12 6 2.2305 -3.6445 -0.0005 13 6 2.8425 -4.0387 -1.1886 14 7 3.6988 -5.0304 -1.2274 15 6 4.0300 -5.7063 -0.1226 16 6 4.9451 -6.7727 -0.1716 17 6 5.2581 -7.4471 0.9678 18 6 4.6809 -7.1019 2.1896 19 17 5.1084 -7.9879 3.6200 20 6 3.7856 -6.0785 2.2750 21 6 3.4395 -5.3614 1.1185 22 6 2.5187 -4.2975 1.1639 23 1 -0.4851 0.8400 0.0004 24 1 -0.3012 -1.8573 -1.1907 25 1 0.9638 -2.5252 -2.0390 26 1 2.6052 -3.5131 -2.1017 27 1 5.4014 -7.0525 -1.1097 28 1 5.9650 -8.2625 0.9255 29 1 3.3447 -5.8203 3.2264 30 1 2.0531 -4.0057 2.0936 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259561672.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:52 Heat of formation + Delta-G solvation = 20.158718 kcal Electronic energy + Delta-G solvation = -16441.281288 eV Core-core repulsion = 13646.836351 eV Total energy + Delta-G solvation = -2794.444937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.82915 -38.79885 -37.39291 -36.36721 -34.44654 -33.27754 -30.95194 -30.79842 -27.98176 -25.35232 -25.12883 -23.22198 -22.46989 -19.06972 -18.73365 -18.16763 -17.83198 -16.68974 -15.92062 -15.75726 -15.54309 -15.49268 -14.80035 -14.68388 -13.99778 -13.93830 -13.79252 -13.48468 -13.20472 -12.87751 -12.80174 -12.54447 -12.07911 -11.97528 -11.86532 -11.79857 -11.36917 -10.78154 -10.40690 -9.58046 -9.29600 -9.13500 -8.15076 -6.41221 -0.64559 -0.19509 0.98054 1.05676 1.37298 1.40742 1.49247 1.85376 2.36182 3.02447 3.10432 3.32894 3.60719 3.75492 3.98339 4.00092 4.12263 4.24926 4.46359 4.67523 4.75465 4.87494 4.94245 5.03261 5.15506 5.21058 5.51659 5.61105 5.69078 5.76464 6.01334 6.58513 6.84968 6.92020 7.08929 7.35729 8.79317 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.030364 B = 0.004686 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.922308 B = 5974.011659 C = 6288.762233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.561 4.561 8 H 0.046 0.954 9 C 0.250 3.750 10 H 0.023 0.977 11 N -0.843 5.843 12 C -0.093 4.093 13 C 0.147 3.853 14 N -0.491 5.491 15 C 0.090 3.910 16 C -0.079 4.079 17 C -0.096 4.096 18 C -0.035 4.035 19 Cl -0.059 7.059 20 C -0.090 4.090 21 C -0.099 4.099 22 C -0.077 4.077 23 H 0.269 0.731 24 H 0.349 0.651 25 H 0.320 0.680 26 H 0.161 0.839 27 H 0.160 0.840 28 H 0.169 0.831 29 H 0.151 0.849 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.751 -12.704 3.214 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.172 4.172 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.601 4.601 8 H 0.064 0.936 9 C 0.139 3.861 10 H 0.041 0.959 11 N -0.373 5.373 12 C -0.096 4.096 13 C -0.024 4.024 14 N -0.199 5.199 15 C -0.031 4.031 16 C -0.098 4.098 17 C -0.116 4.116 18 C -0.061 4.061 19 Cl -0.030 7.030 20 C -0.109 4.109 21 C -0.101 4.101 22 C -0.104 4.104 23 H 0.079 0.921 24 H 0.165 0.835 25 H 0.131 0.869 26 H 0.178 0.822 27 H 0.177 0.823 28 H 0.186 0.814 29 H 0.169 0.831 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.857 -13.730 2.865 16.588 hybrid contribution 0.037 2.466 0.760 2.581 sum 8.894 -11.263 3.625 14.802 Atomic orbital electron populations 1.69812 1.06800 1.28172 1.50220 1.25645 0.95669 1.02061 0.93786 0.85588 0.78490 0.79375 0.78347 1.19898 1.20660 1.20127 1.21942 0.93224 0.92132 1.52795 0.93612 1.17760 0.88715 0.88275 0.91358 0.95934 1.59496 1.18163 1.55625 1.03996 1.21040 0.97796 0.96587 0.94164 1.22859 0.89954 0.91468 0.98163 1.68077 1.14393 1.07575 1.29818 1.19393 0.97932 0.97170 0.88644 1.20935 0.95894 0.92897 1.00054 1.20982 1.00198 1.00939 0.89456 1.20688 0.99953 0.96301 0.89191 1.98369 1.92294 1.74563 1.37793 1.20989 0.97267 0.94412 0.98265 1.18804 0.98815 0.97651 0.94819 1.21442 0.96272 0.93583 0.99060 0.92124 0.83549 0.86935 0.82178 0.82289 0.81384 0.83083 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.19 11.54 21.45 0.25 -47.94 16 2 C 0.03 1.52 5.38 84.65 0.46 1.97 16 3 Si 0.96 41.41 29.54 68.60 2.03 43.43 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.56 -28.95 8.71 25.60 0.22 -28.73 16 8 H 0.05 2.41 7.74 -2.91 -0.02 2.39 16 9 C 0.25 11.92 2.95 43.42 0.13 12.05 16 10 H 0.02 1.19 8.00 -2.39 -0.02 1.17 16 11 N -0.84 -38.34 9.02 -174.96 -1.58 -39.91 16 12 C -0.09 -3.90 4.87 -19.99 -0.10 -4.00 16 13 C 0.15 5.78 10.43 85.07 0.89 6.67 16 14 N -0.49 -18.16 10.34 -188.61 -1.95 -20.11 16 15 C 0.09 3.03 6.60 40.29 0.27 3.30 16 16 C -0.08 -2.02 9.98 22.34 0.22 -1.79 16 17 C -0.10 -2.02 9.72 22.06 0.21 -1.81 16 18 C -0.03 -0.81 6.28 22.10 0.14 -0.67 16 19 Cl -0.06 -1.17 28.92 -2.72 -0.08 -1.25 16 20 C -0.09 -2.41 9.52 22.34 0.21 -2.20 16 21 C -0.10 -3.28 5.74 -21.28 -0.12 -3.40 16 22 C -0.08 -2.88 9.50 22.50 0.21 -2.67 16 23 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 24 H 0.35 17.11 7.08 -89.70 -0.63 16.47 16 25 H 0.32 13.56 7.32 -89.69 -0.66 12.90 16 26 H 0.16 5.96 6.63 -2.91 -0.02 5.94 16 27 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 28 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 29 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 30 H 0.14 4.95 8.05 -2.91 -0.02 4.93 16 Total: -1.00 -55.98 277.65 1.31 -54.67 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: -0.10 Total: 32.38 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 2.74 Total: -21.27 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -3.28 Total: -107.97 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -55.98 1.31 -54.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259561672.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.827 kcal (2) G-P(sol) polarization free energy of solvation -55.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds