Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00417 * 2 1 4 4 H 1.48497 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46879 * 299.99956 * 3 2 1 6 6 H 1.48499 * 109.47049 * 59.99658 * 3 2 1 7 7 C 1.37885 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99665 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46742 * 60.00187 * 9 7 2 11 11 N 1.46897 * 109.47127 * 300.00131 * 9 7 2 12 12 C 1.50693 * 109.46806 * 179.97438 * 9 7 2 13 13 C 1.39335 * 120.03042 * 80.03011 * 12 9 7 14 14 N 1.31078 * 121.74783 * 179.97438 * 13 12 9 15 15 C 1.33679 * 121.32877 * 359.72034 * 14 13 12 16 16 C 1.40606 * 121.05736 * 179.69824 * 15 14 13 17 17 C 1.36057 * 119.76805 * 180.29974 * 16 15 14 18 18 C 1.39472 * 121.04848 * 0.25554 * 17 16 15 19 19 Cl 1.73600 * 119.57993 * 180.02562 * 18 17 16 20 20 C 1.36249 * 120.84560 * 0.04571 * 18 17 16 21 21 C 1.40411 * 119.60464 * 359.97438 * 20 18 17 22 22 C 1.36576 * 120.03688 * 260.00007 * 12 9 7 23 23 H 0.97003 * 119.99865 * 0.02562 * 1 2 3 24 24 H 1.00906 * 110.99638 * 176.04265 * 11 9 7 25 25 H 1.00896 * 111.00413 * 299.99775 * 11 9 7 26 26 H 1.07999 * 119.12524 * 359.96904 * 13 12 9 27 27 H 1.08002 * 120.11909 * 0.58074 * 16 15 14 28 28 H 1.07998 * 119.47664 * 180.28135 * 17 16 15 29 29 H 1.07992 * 120.20056 * 179.97438 * 20 18 17 30 30 H 1.07999 * 120.91791 * 0.05110 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6239 -2.5575 -0.8881 11 7 0.4068 -2.5762 1.2015 12 6 2.2301 -3.6446 0.0015 13 6 2.8429 -4.0384 1.1892 14 7 3.6991 -5.0301 1.2278 15 6 4.0199 -5.7147 0.1253 16 6 4.9439 -6.7735 0.1721 17 6 5.2559 -7.4486 -0.9672 18 6 4.6770 -7.1046 -2.1886 19 17 5.1021 -7.9923 -3.6187 20 6 3.7823 -6.0806 -2.2739 21 6 3.4379 -5.3623 -1.1176 22 6 2.5174 -4.2982 -1.1629 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1573 -3.4128 1.1936 25 1 0.9650 -2.5243 2.0403 26 1 2.6062 -3.5125 2.1023 27 1 5.4010 -7.0529 1.1099 28 1 5.9627 -8.2641 -0.9251 29 1 3.3407 -5.8229 -3.2251 30 1 2.0520 -4.0061 -2.0926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259561676.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = 43.779271 kcal Electronic energy + Delta-G solvation = -16438.896833 eV Core-core repulsion = 13645.476160 eV Total energy + Delta-G solvation = -2793.420673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.61690 -37.64604 -36.26390 -34.71952 -32.95373 -31.64875 -29.81057 -29.37017 -26.14101 -23.99844 -23.65363 -22.04147 -20.92980 -17.86043 -17.25107 -16.47537 -16.41471 -14.89449 -14.56947 -14.39194 -14.27567 -14.10200 -13.73791 -13.08037 -12.84051 -12.70432 -12.45056 -12.05103 -11.65965 -11.38232 -11.02615 -10.94206 -10.87526 -10.69364 -10.31284 -10.01845 -9.37504 -9.14676 -8.54432 -8.30691 -8.01072 -7.25881 -5.99702 -4.16288 0.51504 0.98177 2.05143 2.20830 2.99051 3.26875 3.35887 3.39574 4.29836 4.43133 4.49120 4.69259 4.93178 5.06713 5.17401 5.26552 5.40737 5.43200 5.75811 5.85376 6.00608 6.09927 6.13735 6.18978 6.34344 6.63648 6.68444 7.06004 7.27539 7.78039 8.00547 8.18654 8.45982 8.83382 8.99379 9.53851 11.04330 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.030188 B = 0.004694 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.294127 B = 5963.668192 C = 6278.807105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.087 3.913 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.257 3.743 10 H 0.052 0.948 11 N -0.808 5.808 12 C -0.118 4.118 13 C 0.148 3.852 14 N -0.483 5.483 15 C 0.109 3.891 16 C -0.073 4.073 17 C -0.113 4.113 18 C -0.039 4.039 19 Cl -0.079 7.079 20 C -0.083 4.083 21 C -0.088 4.088 22 C -0.072 4.072 23 H 0.257 0.743 24 H 0.301 0.699 25 H 0.319 0.681 26 H 0.158 0.842 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.017 -13.229 -2.794 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.121 4.121 3 Si 0.713 3.287 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.073 0.927 9 C 0.147 3.853 10 H 0.070 0.930 11 N -0.334 5.334 12 C -0.123 4.123 13 C -0.025 4.025 14 N -0.190 5.190 15 C -0.013 4.013 16 C -0.092 4.092 17 C -0.133 4.133 18 C -0.065 4.065 19 Cl -0.050 7.050 20 C -0.102 4.102 21 C -0.090 4.090 22 C -0.099 4.099 23 H 0.067 0.933 24 H 0.111 0.889 25 H 0.132 0.868 26 H 0.175 0.825 27 H 0.157 0.843 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.980 -12.829 -2.421 14.804 hybrid contribution 0.709 0.286 -0.744 1.067 sum 7.689 -12.543 -3.165 15.048 Atomic orbital electron populations 1.70099 1.05701 1.25900 1.46035 1.24927 0.94656 0.98624 0.93898 0.86662 0.80255 0.84091 0.77663 1.19860 1.20981 1.20874 1.20812 0.92241 0.89191 1.55267 0.92733 1.18257 0.87225 0.88356 0.91470 0.92995 1.59169 1.27893 1.42187 1.04191 1.22620 0.98789 0.97960 0.92920 1.22946 0.89923 0.91064 0.98524 1.68049 1.14376 1.07449 1.29159 1.18895 0.97160 0.96336 0.88863 1.20693 0.96192 0.93855 0.98431 1.20599 1.01035 1.01112 0.90594 1.20526 1.00941 0.96951 0.88109 1.98355 1.92654 1.75148 1.38861 1.20880 0.96732 0.94084 0.98539 1.18765 0.98973 0.97622 0.93668 1.21357 0.95846 0.93202 0.99458 0.93282 0.88897 0.86822 0.82474 0.84326 0.84847 0.84509 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.33 12.77 55.43 0.71 -22.62 16 2 C 0.09 2.29 5.39 -17.82 -0.10 2.20 16 3 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.54 -13.81 8.71 -34.43 -0.30 -14.11 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.26 5.83 2.85 -70.02 -0.20 5.63 16 10 H 0.05 1.29 8.01 -51.93 -0.42 0.87 16 11 N -0.81 -17.34 8.37 -6.65 -0.06 -17.40 16 12 C -0.12 -2.30 4.86 -104.82 -0.51 -2.81 16 13 C 0.15 2.72 10.43 -17.47 -0.18 2.53 16 14 N -0.48 -8.70 10.34 -10.97 -0.11 -8.82 16 15 C 0.11 1.84 6.60 -84.85 -0.56 1.28 16 16 C -0.07 -1.00 9.98 -39.47 -0.39 -1.39 16 17 C -0.11 -1.37 9.72 -39.91 -0.39 -1.76 16 18 C -0.04 -0.50 6.28 -39.84 -0.25 -0.75 16 19 Cl -0.08 -0.89 28.92 -51.86 -1.50 -2.39 16 20 C -0.08 -1.16 9.52 -39.48 -0.38 -1.54 16 21 C -0.09 -1.45 5.74 -106.80 -0.61 -2.06 16 22 C -0.07 -1.28 9.50 -39.22 -0.37 -1.65 16 23 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 24 H 0.30 5.73 9.06 -39.29 -0.36 5.38 16 25 H 0.32 6.41 7.32 -39.29 -0.29 6.13 16 26 H 0.16 2.70 6.63 -52.49 -0.35 2.36 16 27 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.14 2.24 8.05 -52.49 -0.42 1.82 16 LS Contribution 280.11 15.07 4.22 4.22 Total: -1.00 -28.18 280.11 -8.64 -36.82 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -2.64 Total: 9.10 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -4.24 Total: -14.43 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.54 Total: -48.83 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.18 -8.64 -36.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259561676.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.600 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds