Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00417 * 2 1 4 4 H 1.48497 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46879 * 299.99956 * 3 2 1 6 6 H 1.48499 * 109.47049 * 59.99658 * 3 2 1 7 7 C 1.37885 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99665 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46742 * 60.00187 * 9 7 2 11 11 N 1.46897 * 109.47127 * 300.00131 * 9 7 2 12 12 C 1.50693 * 109.46806 * 179.97438 * 9 7 2 13 13 C 1.39335 * 120.03042 * 80.03011 * 12 9 7 14 14 N 1.31078 * 121.74783 * 179.97438 * 13 12 9 15 15 C 1.33679 * 121.32877 * 359.72034 * 14 13 12 16 16 C 1.40606 * 121.05736 * 179.69824 * 15 14 13 17 17 C 1.36057 * 119.76805 * 180.29974 * 16 15 14 18 18 C 1.39472 * 121.04848 * 0.25554 * 17 16 15 19 19 Cl 1.73600 * 119.57993 * 180.02562 * 18 17 16 20 20 C 1.36249 * 120.84560 * 0.04571 * 18 17 16 21 21 C 1.40411 * 119.60464 * 359.97438 * 20 18 17 22 22 C 1.36576 * 120.03688 * 260.00007 * 12 9 7 23 23 H 0.97003 * 119.99865 * 0.02562 * 1 2 3 24 24 H 1.00906 * 110.99638 * 176.04265 * 11 9 7 25 25 H 1.00896 * 111.00413 * 299.99775 * 11 9 7 26 26 H 1.07999 * 119.12524 * 359.96904 * 13 12 9 27 27 H 1.08002 * 120.11909 * 0.58074 * 16 15 14 28 28 H 1.07998 * 119.47664 * 180.28135 * 17 16 15 29 29 H 1.07992 * 120.20056 * 179.97438 * 20 18 17 30 30 H 1.07999 * 120.91791 * 0.05110 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6239 -2.5575 -0.8881 11 7 0.4068 -2.5762 1.2015 12 6 2.2301 -3.6446 0.0015 13 6 2.8429 -4.0384 1.1892 14 7 3.6991 -5.0301 1.2278 15 6 4.0199 -5.7147 0.1253 16 6 4.9439 -6.7735 0.1721 17 6 5.2559 -7.4486 -0.9672 18 6 4.6770 -7.1046 -2.1886 19 17 5.1021 -7.9923 -3.6187 20 6 3.7823 -6.0806 -2.2739 21 6 3.4379 -5.3623 -1.1176 22 6 2.5174 -4.2982 -1.1629 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1573 -3.4128 1.1936 25 1 0.9650 -2.5243 2.0403 26 1 2.6062 -3.5125 2.1023 27 1 5.4010 -7.0529 1.1099 28 1 5.9627 -8.2641 -0.9251 29 1 3.3407 -5.8229 -3.2251 30 1 2.0520 -4.0061 -2.0926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259561676.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = 26.514912 kcal Electronic energy + Delta-G solvation = -16439.645472 eV Core-core repulsion = 13645.476160 eV Total energy + Delta-G solvation = -2794.169312 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.88160 -38.84851 -37.39800 -36.24617 -34.37795 -33.42937 -30.99275 -30.75910 -28.01597 -25.28086 -25.13582 -23.25847 -22.49120 -19.10933 -18.73181 -18.08727 -17.75444 -16.62388 -16.00764 -15.81994 -15.58159 -15.45334 -15.06583 -14.43701 -14.27109 -14.02035 -13.84545 -13.41560 -13.22560 -12.83517 -12.73787 -12.50325 -12.06770 -11.94346 -11.87912 -11.63666 -11.07444 -10.63006 -10.50298 -9.60735 -9.24711 -8.92603 -8.00287 -6.21924 -0.68937 -0.25103 0.93928 1.03169 1.42297 1.46050 1.55014 1.80006 2.46651 3.03959 3.23828 3.28226 3.57426 3.74644 3.94113 3.97520 4.07271 4.25711 4.43221 4.43763 4.71838 4.85495 4.89933 5.01880 5.12660 5.20777 5.48313 5.54830 5.72488 5.75662 6.11515 6.61263 6.84690 7.07468 7.22985 7.51151 9.02965 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.030188 B = 0.004694 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.294127 B = 5963.668192 C = 6278.807105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.043 0.957 9 C 0.266 3.734 10 H 0.023 0.977 11 N -0.819 5.819 12 C -0.139 4.139 13 C 0.138 3.862 14 N -0.489 5.489 15 C 0.090 3.910 16 C -0.080 4.080 17 C -0.095 4.095 18 C -0.034 4.034 19 Cl -0.058 7.058 20 C -0.090 4.090 21 C -0.099 4.099 22 C -0.071 4.071 23 H 0.257 0.743 24 H 0.314 0.686 25 H 0.326 0.674 26 H 0.161 0.839 27 H 0.159 0.841 28 H 0.169 0.831 29 H 0.152 0.848 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.767 -14.861 -3.363 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.062 0.938 9 C 0.155 3.845 10 H 0.041 0.959 11 N -0.346 5.346 12 C -0.143 4.143 13 C -0.034 4.034 14 N -0.197 5.197 15 C -0.031 4.031 16 C -0.098 4.098 17 C -0.115 4.115 18 C -0.061 4.061 19 Cl -0.029 7.029 20 C -0.109 4.109 21 C -0.102 4.102 22 C -0.098 4.098 23 H 0.066 0.934 24 H 0.125 0.875 25 H 0.139 0.861 26 H 0.178 0.822 27 H 0.177 0.823 28 H 0.186 0.814 29 H 0.170 0.830 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.740 -14.472 -2.992 17.169 hybrid contribution 0.274 0.583 -0.682 0.938 sum 9.015 -13.889 -3.674 16.961 Atomic orbital electron populations 1.70204 1.06869 1.26450 1.47513 1.25578 0.95344 1.01482 0.93849 0.85747 0.78932 0.80646 0.77591 1.19888 1.20668 1.20661 1.21074 0.91905 0.90886 1.54414 0.93844 1.17848 0.87308 0.88634 0.90674 0.95919 1.58977 1.28284 1.43238 1.04121 1.22205 0.99709 0.98185 0.94250 1.22896 0.90516 0.91712 0.98262 1.68058 1.14240 1.07419 1.29951 1.19384 0.97952 0.97143 0.88652 1.20940 0.95724 0.93119 1.00060 1.20992 1.00180 1.00853 0.89490 1.20705 0.99885 0.96270 0.89217 1.98372 1.92344 1.74451 1.37774 1.21010 0.97284 0.94317 0.98338 1.18859 0.98957 0.97651 0.94686 1.21511 0.95791 0.93341 0.99141 0.93409 0.87466 0.86080 0.82180 0.82325 0.81384 0.83030 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.28 12.77 21.45 0.27 -49.01 16 2 C 0.04 2.25 5.39 84.66 0.46 2.70 16 3 Si 0.94 42.68 29.54 68.60 2.03 44.71 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.54 -28.64 8.71 25.60 0.22 -28.41 16 8 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 9 C 0.27 12.44 2.85 43.42 0.12 12.57 16 10 H 0.02 1.18 8.01 -2.39 -0.02 1.16 16 11 N -0.82 -36.03 8.37 -174.96 -1.46 -37.49 16 12 C -0.14 -5.53 4.86 -19.99 -0.10 -5.63 16 13 C 0.14 5.16 10.43 85.07 0.89 6.04 16 14 N -0.49 -17.42 10.34 -188.62 -1.95 -19.37 16 15 C 0.09 2.93 6.60 40.29 0.27 3.20 16 16 C -0.08 -1.97 9.98 22.34 0.22 -1.74 16 17 C -0.10 -1.94 9.72 22.06 0.21 -1.73 16 18 C -0.03 -0.77 6.28 22.10 0.14 -0.63 16 19 Cl -0.06 -1.12 28.92 -2.72 -0.08 -1.20 16 20 C -0.09 -2.33 9.52 22.34 0.21 -2.12 16 21 C -0.10 -3.18 5.74 -21.28 -0.12 -3.30 16 22 C -0.07 -2.55 9.50 22.50 0.21 -2.34 16 23 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 24 H 0.31 12.27 9.06 -89.69 -0.81 11.46 16 25 H 0.33 13.42 7.32 -89.70 -0.66 12.76 16 26 H 0.16 5.66 6.63 -2.91 -0.02 5.64 16 27 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 28 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 29 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.14 4.78 8.05 -2.91 -0.02 4.76 16 Total: -1.00 -60.15 280.11 1.27 -58.87 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.27 Total: 24.88 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 2.74 Total: -21.39 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -3.14 Total: -105.87 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -60.15 1.27 -58.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259561676.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.390 kcal (2) G-P(sol) polarization free energy of solvation -60.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds