Wall clock time and date at job start Mon Mar 30 2020 06:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00097 * 2 1 4 4 H 1.48504 * 109.46938 * 270.00300 * 3 2 1 5 5 H 1.48496 * 109.46974 * 29.99754 * 3 2 1 6 6 H 1.48492 * 109.47275 * 150.00135 * 3 2 1 7 7 C 1.37881 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99541 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46515 * 60.00650 * 9 7 2 11 11 N 1.46901 * 109.47536 * 300.00419 * 9 7 2 12 12 C 1.50703 * 109.46844 * 180.02562 * 9 7 2 13 13 C 1.39332 * 120.02834 * 80.00282 * 12 9 7 14 14 N 1.31088 * 121.74198 * 179.97438 * 13 12 9 15 15 C 1.33670 * 121.32295 * 0.02562 * 14 13 12 16 16 C 1.40709 * 121.07742 * 179.97438 * 15 14 13 17 17 Cl 1.73604 * 120.14174 * 0.02562 * 16 15 14 18 18 C 1.36182 * 119.71941 * 180.02562 * 16 15 14 19 19 C 1.39334 * 121.05652 * 0.02562 * 18 16 15 20 20 C 1.36143 * 120.87881 * 0.23340 * 19 18 16 21 21 C 1.40431 * 119.64564 * 359.49614 * 20 19 18 22 22 C 1.36567 * 120.03509 * 260.02491 * 12 9 7 23 23 H 0.97000 * 120.00117 * 0.02562 * 1 2 3 24 24 H 1.00895 * 110.99625 * 176.04573 * 11 9 7 25 25 H 1.00898 * 110.99601 * 300.00030 * 11 9 7 26 26 H 1.07991 * 119.13383 * 0.02689 * 13 12 9 27 27 H 1.08005 * 119.47192 * 179.97438 * 18 16 15 28 28 H 1.08002 * 119.55671 * 179.97438 * 19 18 16 29 29 H 1.08010 * 120.17336 * 179.74794 * 20 19 18 30 30 H 1.08004 * 120.93007 * 359.95631 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6241 -2.5566 -0.8904 11 7 0.4068 -2.5773 1.1991 12 6 2.2303 -3.6446 -0.0005 13 6 2.8426 -4.0385 1.1875 14 7 3.6989 -5.0303 1.2261 15 6 4.0246 -5.7106 0.1226 16 6 4.9448 -6.7740 0.1700 17 17 5.6791 -7.2250 1.6771 18 6 5.2570 -7.4480 -0.9715 19 6 4.6796 -7.1019 -2.1914 20 6 3.7893 -6.0755 -2.2768 21 6 3.4390 -5.3616 -1.1193 22 6 2.5189 -4.2972 -1.1649 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1571 -3.4139 1.1905 25 1 0.9651 -2.5261 2.0380 26 1 2.6049 -3.5134 2.1007 27 1 5.9642 -8.2634 -0.9306 28 1 4.9450 -7.6526 -3.0817 29 1 3.3516 -5.8143 -3.2291 30 1 2.0534 -4.0056 -2.0949 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259581183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:21 Heat of formation + Delta-G solvation = 45.015221 kcal Electronic energy + Delta-G solvation = -16572.507447 eV Core-core repulsion = 13779.140369 eV Total energy + Delta-G solvation = -2793.367079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.58733 -37.44618 -36.23960 -34.80715 -32.70936 -31.61818 -29.86657 -29.31897 -26.12874 -23.95670 -23.68589 -21.93443 -20.89820 -17.87701 -17.16261 -16.43099 -16.36267 -14.82737 -14.68833 -14.35598 -14.32511 -14.17180 -13.72596 -12.99276 -12.66265 -12.56166 -12.14988 -11.94764 -11.57069 -11.34793 -11.32370 -10.90448 -10.81938 -10.64354 -10.16046 -9.87401 -9.33226 -9.11748 -8.52778 -8.37684 -7.90530 -7.23975 -5.98489 -4.15054 0.52811 1.04526 2.20445 2.24107 3.07727 3.28409 3.36152 3.39697 4.30511 4.44125 4.44466 4.76481 4.98995 5.08529 5.18079 5.27442 5.42832 5.44558 5.67854 5.85052 6.05171 6.10389 6.17961 6.26778 6.40837 6.64552 6.72290 7.08123 7.28977 7.79051 8.01872 8.20506 8.47564 8.85037 9.00647 9.54969 11.05517 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.005187 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.972052 B = 5396.902946 C = 5639.842825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.087 3.913 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.258 3.742 10 H 0.052 0.948 11 N -0.809 5.809 12 C -0.118 4.118 13 C 0.147 3.853 14 N -0.473 5.473 15 C 0.112 3.888 16 C -0.007 4.007 17 Cl -0.058 7.058 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.090 4.090 21 C -0.086 4.086 22 C -0.075 4.075 23 H 0.258 0.742 24 H 0.300 0.700 25 H 0.319 0.681 26 H 0.158 0.842 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -13.283 -2.895 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.121 4.121 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.148 3.852 10 H 0.070 0.930 11 N -0.335 5.335 12 C -0.122 4.122 13 C -0.025 4.025 14 N -0.181 5.181 15 C -0.011 4.011 16 C -0.034 4.034 17 Cl -0.029 7.029 18 C -0.130 4.130 19 C -0.138 4.138 20 C -0.109 4.109 21 C -0.089 4.089 22 C -0.101 4.101 23 H 0.068 0.932 24 H 0.111 0.889 25 H 0.132 0.868 26 H 0.175 0.825 27 H 0.151 0.849 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.036 -12.842 -2.241 14.814 hybrid contribution 0.767 0.316 -0.457 0.947 sum 7.803 -12.526 -2.698 15.002 Atomic orbital electron populations 1.70088 1.05693 1.25994 1.45992 1.24922 0.94655 0.98597 0.93909 0.86721 0.80049 0.83796 0.78093 1.20694 1.21115 1.19935 1.20777 0.92216 0.89217 1.55334 0.92789 1.18248 0.87202 0.88337 0.91453 0.93021 1.59169 1.27911 1.42162 1.04212 1.22636 0.98675 0.97919 0.92975 1.22937 0.90008 0.91026 0.98548 1.68080 1.14061 1.07270 1.28650 1.18453 0.97064 0.95867 0.89691 1.20476 0.97872 0.97047 0.88051 1.98350 1.80992 1.91374 1.32201 1.20686 1.00935 1.00233 0.91108 1.20704 0.97892 0.98166 0.97084 1.21087 0.97240 0.94994 0.97534 1.18814 0.98597 0.97816 0.93657 1.21358 0.96046 0.93296 0.99415 0.93237 0.88908 0.86799 0.82458 0.84931 0.85164 0.84987 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.43 12.77 55.43 0.71 -22.72 16 2 C 0.09 2.31 5.39 -17.82 -0.10 2.22 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -13.91 8.71 -34.44 -0.30 -14.21 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.26 5.88 2.85 -70.01 -0.20 5.68 16 10 H 0.05 1.28 8.01 -51.93 -0.42 0.87 16 11 N -0.81 -17.54 8.37 -6.65 -0.06 -17.60 16 12 C -0.12 -2.31 4.86 -104.82 -0.51 -2.82 16 13 C 0.15 2.79 10.43 -17.46 -0.18 2.61 16 14 N -0.47 -8.97 9.82 -10.95 -0.11 -9.08 16 15 C 0.11 1.98 6.60 -84.83 -0.56 1.42 16 16 C -0.01 -0.11 6.33 -39.39 -0.25 -0.36 16 17 Cl -0.06 -0.85 28.53 -51.86 -1.48 -2.33 16 18 C -0.11 -1.34 9.71 -39.91 -0.39 -1.73 16 19 C -0.12 -1.36 9.95 -39.93 -0.40 -1.75 16 20 C -0.09 -1.17 9.77 -39.51 -0.39 -1.55 16 21 C -0.09 -1.43 5.74 -106.81 -0.61 -2.04 16 22 C -0.07 -1.32 9.50 -39.23 -0.37 -1.70 16 23 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 24 H 0.30 5.81 9.06 -39.29 -0.36 5.45 16 25 H 0.32 6.54 7.32 -39.29 -0.29 6.25 16 26 H 0.16 2.82 6.62 -52.49 -0.35 2.47 16 27 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 28 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 30 H 0.14 2.22 8.05 -52.48 -0.42 1.80 16 LS Contribution 279.47 15.07 4.21 4.21 Total: -1.00 -29.01 279.47 -8.64 -37.65 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -2.64 Total: 8.47 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -4.25 Total: -14.23 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.54 Total: -49.40 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.48 Total: -2.33 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.01 -8.64 -37.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.664 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds