Wall clock time and date at job start Mon Mar 30 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00097 * 2 1 4 4 H 1.48504 * 109.46938 * 270.00300 * 3 2 1 5 5 H 1.48496 * 109.46974 * 29.99754 * 3 2 1 6 6 H 1.48492 * 109.47275 * 150.00135 * 3 2 1 7 7 C 1.37881 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99541 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46515 * 60.00650 * 9 7 2 11 11 N 1.46901 * 109.47536 * 300.00419 * 9 7 2 12 12 C 1.50703 * 109.46844 * 180.02562 * 9 7 2 13 13 C 1.39332 * 120.02834 * 80.00282 * 12 9 7 14 14 N 1.31088 * 121.74198 * 179.97438 * 13 12 9 15 15 C 1.33670 * 121.32295 * 0.02562 * 14 13 12 16 16 C 1.40709 * 121.07742 * 179.97438 * 15 14 13 17 17 Cl 1.73604 * 120.14174 * 0.02562 * 16 15 14 18 18 C 1.36182 * 119.71941 * 180.02562 * 16 15 14 19 19 C 1.39334 * 121.05652 * 0.02562 * 18 16 15 20 20 C 1.36143 * 120.87881 * 0.23340 * 19 18 16 21 21 C 1.40431 * 119.64564 * 359.49614 * 20 19 18 22 22 C 1.36567 * 120.03509 * 260.02491 * 12 9 7 23 23 H 0.97000 * 120.00117 * 0.02562 * 1 2 3 24 24 H 1.00895 * 110.99625 * 176.04573 * 11 9 7 25 25 H 1.00898 * 110.99601 * 300.00030 * 11 9 7 26 26 H 1.07991 * 119.13383 * 0.02689 * 13 12 9 27 27 H 1.08005 * 119.47192 * 179.97438 * 18 16 15 28 28 H 1.08002 * 119.55671 * 179.97438 * 19 18 16 29 29 H 1.08010 * 120.17336 * 179.74794 * 20 19 18 30 30 H 1.08004 * 120.93007 * 359.95631 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6241 -2.5566 -0.8904 11 7 0.4068 -2.5773 1.1991 12 6 2.2303 -3.6446 -0.0005 13 6 2.8426 -4.0385 1.1875 14 7 3.6989 -5.0303 1.2261 15 6 4.0246 -5.7106 0.1226 16 6 4.9448 -6.7740 0.1700 17 17 5.6791 -7.2250 1.6771 18 6 5.2570 -7.4480 -0.9715 19 6 4.6796 -7.1019 -2.1914 20 6 3.7893 -6.0755 -2.2768 21 6 3.4390 -5.3616 -1.1193 22 6 2.5189 -4.2972 -1.1649 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1571 -3.4139 1.1905 25 1 0.9651 -2.5261 2.0380 26 1 2.6049 -3.5134 2.1007 27 1 5.9642 -8.2634 -0.9306 28 1 4.9450 -7.6526 -3.0817 29 1 3.3516 -5.8143 -3.2291 30 1 2.0534 -4.0056 -2.0949 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259581183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:20 Heat of formation + Delta-G solvation = 26.675915 kcal Electronic energy + Delta-G solvation = -16573.302699 eV Core-core repulsion = 13779.140369 eV Total energy + Delta-G solvation = -2794.162331 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.84938 -38.69839 -37.35942 -36.41033 -34.20000 -33.34816 -31.06614 -30.65818 -28.01201 -25.22482 -25.17870 -23.15476 -22.44147 -19.11262 -18.71162 -17.99753 -17.70266 -16.58946 -15.99417 -15.78484 -15.65800 -15.55663 -15.06226 -14.40496 -14.28616 -13.96261 -13.44851 -13.35655 -13.03175 -12.77699 -12.70639 -12.46411 -12.41649 -11.99763 -11.78428 -11.51049 -10.90397 -10.61783 -10.48504 -9.69650 -9.12846 -8.91788 -8.00305 -6.21942 -0.65527 -0.18050 0.92659 1.14305 1.42475 1.45437 1.53593 1.93424 2.46470 3.04995 3.21912 3.24956 3.69119 3.79854 3.93247 4.05577 4.20412 4.35485 4.39439 4.47336 4.59748 4.88432 4.97929 5.10173 5.19974 5.35970 5.52796 5.58061 5.73067 5.82117 6.11488 6.60885 6.85154 7.06403 7.22480 7.50965 9.02731 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.005187 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.972052 B = 5396.902946 C = 5639.842825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.042 0.958 9 C 0.267 3.733 10 H 0.025 0.975 11 N -0.819 5.819 12 C -0.140 4.140 13 C 0.135 3.865 14 N -0.487 5.487 15 C 0.089 3.911 16 C -0.037 4.037 17 Cl -0.060 7.060 18 C -0.088 4.088 19 C -0.102 4.102 20 C -0.093 4.093 21 C -0.100 4.100 22 C -0.070 4.070 23 H 0.257 0.743 24 H 0.313 0.687 25 H 0.324 0.676 26 H 0.156 0.844 27 H 0.167 0.833 28 H 0.178 0.822 29 H 0.161 0.839 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.657 -15.044 -4.594 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.162 4.162 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.060 0.940 9 C 0.157 3.843 10 H 0.043 0.957 11 N -0.346 5.346 12 C -0.145 4.145 13 C -0.037 4.037 14 N -0.195 5.195 15 C -0.034 4.034 16 C -0.064 4.064 17 Cl -0.031 7.031 18 C -0.108 4.108 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.103 4.103 22 C -0.097 4.097 23 H 0.066 0.934 24 H 0.125 0.875 25 H 0.138 0.862 26 H 0.174 0.826 27 H 0.184 0.816 28 H 0.195 0.805 29 H 0.178 0.822 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.652 -14.611 -3.940 17.432 hybrid contribution 0.379 0.654 -0.031 0.757 sum 9.031 -13.957 -3.971 17.092 Atomic orbital electron populations 1.70194 1.06839 1.26515 1.47447 1.25570 0.95347 1.01438 0.93851 0.85817 0.78699 0.80388 0.78125 1.20123 1.20927 1.20075 1.21046 0.91862 0.90960 1.54506 0.93966 1.17843 0.87273 0.88581 0.90642 0.95716 1.58993 1.28311 1.43165 1.04155 1.22211 0.99688 0.98281 0.94310 1.22828 0.90785 0.91724 0.98333 1.68053 1.14171 1.07453 1.29848 1.18906 0.97973 0.96623 0.89854 1.20687 0.98776 0.97709 0.89239 1.98343 1.80904 1.91276 1.32615 1.21225 0.99799 0.99492 0.90270 1.21263 0.95646 0.96907 0.98173 1.21456 0.97505 0.94858 0.97304 1.19026 0.98487 0.97974 0.94775 1.21565 0.95803 0.93246 0.99087 0.93390 0.87526 0.86234 0.82644 0.81588 0.80453 0.82153 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.51 12.77 21.45 0.27 -49.24 16 2 C 0.04 2.29 5.39 84.66 0.46 2.75 16 3 Si 0.94 42.98 29.54 68.60 2.03 45.01 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.55 -28.96 8.71 25.60 0.22 -28.74 16 8 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 9 C 0.27 12.61 2.85 43.43 0.12 12.74 16 10 H 0.02 1.29 8.01 -2.39 -0.02 1.27 16 11 N -0.82 -36.72 8.37 -174.94 -1.46 -38.19 16 12 C -0.14 -5.68 4.86 -19.99 -0.10 -5.78 16 13 C 0.14 5.31 10.43 85.07 0.89 6.20 16 14 N -0.49 -18.74 9.82 -188.57 -1.85 -20.60 16 15 C 0.09 3.08 6.60 40.31 0.27 3.34 16 16 C -0.04 -1.05 6.33 22.39 0.14 -0.91 16 17 Cl -0.06 -1.68 28.53 -2.72 -0.08 -1.76 16 18 C -0.09 -1.78 9.71 22.05 0.21 -1.57 16 19 C -0.10 -1.76 9.95 22.05 0.22 -1.54 16 20 C -0.09 -2.05 9.77 22.32 0.22 -1.83 16 21 C -0.10 -3.17 5.74 -21.28 -0.12 -3.30 16 22 C -0.07 -2.49 9.50 22.50 0.21 -2.28 16 23 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 24 H 0.31 12.52 9.06 -89.70 -0.81 11.71 16 25 H 0.32 13.81 7.32 -89.70 -0.66 13.15 16 26 H 0.16 5.89 6.62 -2.92 -0.02 5.87 16 27 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 30 H 0.15 4.77 8.05 -2.91 -0.02 4.74 16 Total: -1.00 -63.91 279.47 1.38 -62.53 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.27 Total: 23.15 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 2.74 Total: -20.91 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -3.04 Total: -108.02 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -63.91 1.38 -62.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.209 kcal (2) G-P(sol) polarization free energy of solvation -63.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds