Wall clock time and date at job start Mon Mar 30 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35763 * 116.99693 * 2 1 4 4 C 1.38599 * 120.14312 * 359.97300 * 3 2 1 5 5 C 1.38149 * 120.08690 * 180.02562 * 4 3 2 6 6 C 1.38475 * 120.36571 * 0.02562 * 5 4 3 7 7 C 1.37887 * 120.27112 * 359.69593 * 6 5 4 8 8 C 1.39589 * 119.91078 * 0.57678 * 7 6 5 9 9 C 1.47723 * 120.18023 * 179.72433 * 8 7 6 10 10 N 1.31838 * 127.82689 * 359.42706 * 9 8 7 11 11 C 1.32764 * 113.62872 * 180.26224 * 10 9 8 12 12 C 1.41256 * 120.97002 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00375 * 359.97438 * 12 11 10 14 14 C 1.39852 * 119.99614 * 179.97438 * 12 11 10 15 15 N 1.30863 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99785 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47067 * 59.99787 * 16 14 12 18 18 H 1.48500 * 109.47015 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47020 * 300.00107 * 16 14 12 20 20 N 1.31664 * 118.05614 * 0.02562 * 11 10 9 21 21 S 1.56653 * 108.41214 * 359.97438 * 20 11 10 22 22 H 1.08999 * 109.46691 * 60.00218 * 1 2 3 23 23 H 1.08992 * 109.46606 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46656 * 300.00507 * 1 2 3 25 25 H 1.08006 * 119.95717 * 0.03044 * 4 3 2 26 26 H 1.07997 * 119.82150 * 179.97438 * 5 4 3 27 27 H 1.07999 * 119.86626 * 179.97438 * 6 5 4 28 28 H 1.08000 * 120.04563 * 180.30181 * 7 6 5 29 29 H 0.97005 * 119.99722 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2933 2.3739 -0.0006 5 6 1.9217 3.6043 -0.0011 6 6 3.3041 3.6843 -0.0016 7 6 4.0668 2.5356 0.0047 8 6 3.4439 1.2864 -0.0005 9 6 4.2553 0.0519 0.0001 10 7 5.5696 -0.0518 -0.0052 11 6 6.0044 -1.3062 -0.0085 12 6 7.3868 -1.5963 -0.0149 13 1 8.1074 -0.7919 -0.0176 14 6 7.8223 -2.9253 -0.0177 15 7 6.9491 -3.9000 -0.0149 16 14 9.6505 -3.3090 -0.0254 17 1 10.2836 -2.7265 1.1850 18 1 9.8473 -4.7809 -0.0280 19 1 10.2738 -2.7246 -1.2400 20 7 5.1094 -2.2718 -0.0067 21 16 3.6829 -1.6243 0.0000 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8899 25 1 0.2147 2.3192 -0.0005 26 1 1.3315 4.5087 -0.0020 27 1 3.7869 4.6503 -0.0024 28 1 5.1448 2.6022 0.0092 29 1 7.2512 -4.8218 -0.0165 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259594489.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:08 Heat of formation + Delta-G solvation = 43.036530 kcal Electronic energy + Delta-G solvation = -16554.289452 eV Core-core repulsion = 13762.880277 eV Total energy + Delta-G solvation = -2791.409175 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94402 -38.38072 -37.09599 -33.47024 -31.92126 -29.99338 -29.48006 -27.34253 -27.02814 -24.13832 -21.95599 -21.45367 -19.11336 -17.83751 -17.22612 -16.95455 -15.70380 -15.61563 -15.44612 -14.77038 -14.33230 -13.70912 -13.61823 -13.42933 -12.97090 -12.50280 -11.99066 -11.51528 -11.35036 -11.15944 -11.05668 -11.00466 -10.82669 -10.35860 -9.83036 -9.71217 -9.15670 -9.10606 -8.55587 -8.31486 -8.04670 -7.18132 -6.46537 -4.49232 1.09527 1.59638 2.55412 2.86206 3.11023 3.14334 3.17713 3.32485 3.96108 4.01714 4.25177 4.33960 4.74414 4.91877 5.16423 5.21550 5.25944 5.37902 5.46138 5.55791 5.58074 5.84260 6.04121 6.27540 6.53348 6.68466 6.83579 6.95676 7.25654 7.55182 7.60172 8.12786 8.62241 8.78743 9.57541 10.43174 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.034580 B = 0.005705 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.523336 B = 4906.409704 C = 5700.776331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.142 3.858 4 C -0.211 4.211 5 C -0.081 4.081 6 C -0.161 4.161 7 C -0.047 4.047 8 C -0.023 4.023 9 C 0.045 3.955 10 N -0.492 5.492 11 C 0.337 3.663 12 C -0.410 4.410 13 H 0.089 0.911 14 C 0.065 3.935 15 N -0.744 5.744 16 Si 0.920 3.080 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.265 1.265 20 N -0.545 5.545 21 S 0.202 5.798 22 H 0.053 0.947 23 H 0.101 0.899 24 H 0.053 0.947 25 H 0.129 0.871 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.139 0.861 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 10.091 0.033 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.209 6.209 3 C 0.092 3.908 4 C -0.230 4.230 5 C -0.101 4.101 6 C -0.180 4.180 7 C -0.069 4.069 8 C -0.028 4.028 9 C -0.242 4.242 10 N -0.215 5.215 11 C 0.077 3.923 12 C -0.456 4.456 13 H 0.107 0.893 14 C -0.157 4.157 15 N -0.372 5.372 16 Si 0.745 3.255 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.190 1.190 20 N -0.384 5.384 21 S 0.341 5.659 22 H 0.072 0.928 23 H 0.119 0.881 24 H 0.072 0.928 25 H 0.147 0.853 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.157 0.843 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.438 8.403 0.032 14.193 hybrid contribution 1.323 0.519 -0.004 1.421 sum -10.115 8.923 0.028 13.488 Atomic orbital electron populations 1.23076 0.78801 1.04072 1.00901 1.86232 1.20894 1.25964 1.87785 1.19038 0.91053 0.84830 0.95839 1.21036 0.99725 0.91972 1.10267 1.20939 0.94652 0.96717 0.97806 1.20975 0.93726 0.98249 1.05019 1.21253 1.00869 0.90009 0.94757 1.17161 0.88239 0.90901 1.06455 1.27634 0.93327 0.99579 1.03621 1.69122 1.09426 1.22821 1.20137 1.20087 0.96645 0.80051 0.95492 1.18705 0.88011 0.92838 1.46047 0.89265 1.25869 1.00007 0.95909 0.93949 1.69997 1.34932 1.00010 1.32259 0.86183 0.81937 0.77658 0.79768 1.19012 1.20422 1.19017 1.74802 0.98310 1.25652 1.39629 1.82104 1.19615 0.96310 1.67905 0.92830 0.88096 0.92835 0.85344 0.86006 0.85778 0.84311 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 15 2 O -0.30 -4.75 7.93 -19.00 -0.15 -4.90 15 3 C 0.14 2.32 6.70 -38.76 -0.26 2.06 15 4 C -0.21 -2.68 9.03 -39.48 -0.36 -3.03 15 5 C -0.08 -0.95 10.03 -39.53 -0.40 -1.35 15 6 C -0.16 -2.10 10.03 -39.62 -0.40 -2.49 15 7 C -0.05 -0.78 9.72 -39.21 -0.38 -1.16 15 8 C -0.02 -0.45 5.89 -104.83 -0.62 -1.07 15 9 C 0.05 1.08 7.54 -13.68 -0.10 0.98 15 10 N -0.49 -13.29 10.62 -21.02 -0.22 -13.52 15 11 C 0.34 10.00 7.17 -160.60 -1.15 8.85 15 12 C -0.41 -11.88 9.40 -37.83 -0.36 -12.23 15 13 H 0.09 2.45 7.84 -52.49 -0.41 2.04 15 14 C 0.07 1.78 5.49 -17.36 -0.10 1.69 15 15 N -0.74 -21.35 11.56 55.54 0.64 -20.71 15 16 Si 0.92 19.92 29.56 -169.99 -5.02 14.90 15 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 20 N -0.55 -16.22 9.09 20.96 0.19 -16.03 15 21 S 0.20 5.02 21.21 -107.50 -2.28 2.74 15 22 H 0.05 0.46 7.66 -51.93 -0.40 0.07 15 23 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.05 0.46 7.66 -51.93 -0.40 0.06 15 25 H 0.13 1.24 6.30 -52.48 -0.33 0.91 15 26 H 0.12 1.03 8.06 -52.49 -0.42 0.60 15 27 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 28 H 0.14 2.38 7.93 -52.49 -0.42 1.96 15 29 H 0.27 7.14 8.30 -40.82 -0.34 6.80 15 LS Contribution 272.06 15.07 4.10 4.10 Total: -1.00 -33.84 272.06 -8.22 -42.06 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -2.36 Total: -2.15 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.12 Total: -6.49 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.61 Total: -50.25 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.15 Total: -4.90 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -2.28 Total: 2.74 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.84 -8.22 -42.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259594489.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.097 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds