Wall clock time and date at job start Mon Mar 30 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35763 * 116.99693 * 2 1 4 4 C 1.38599 * 120.14312 * 359.97300 * 3 2 1 5 5 C 1.38149 * 120.08690 * 180.02562 * 4 3 2 6 6 C 1.38475 * 120.36571 * 0.02562 * 5 4 3 7 7 C 1.37887 * 120.27112 * 359.69593 * 6 5 4 8 8 C 1.39589 * 119.91078 * 0.57678 * 7 6 5 9 9 C 1.47723 * 120.18023 * 179.72433 * 8 7 6 10 10 N 1.31838 * 127.82689 * 359.42706 * 9 8 7 11 11 C 1.32764 * 113.62872 * 180.26224 * 10 9 8 12 12 C 1.41256 * 120.97002 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00375 * 359.97438 * 12 11 10 14 14 C 1.39852 * 119.99614 * 179.97438 * 12 11 10 15 15 N 1.30863 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99785 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47067 * 59.99787 * 16 14 12 18 18 H 1.48500 * 109.47015 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47020 * 300.00107 * 16 14 12 20 20 N 1.31664 * 118.05614 * 0.02562 * 11 10 9 21 21 S 1.56653 * 108.41214 * 359.97438 * 20 11 10 22 22 H 1.08999 * 109.46691 * 60.00218 * 1 2 3 23 23 H 1.08992 * 109.46606 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46656 * 300.00507 * 1 2 3 25 25 H 1.08006 * 119.95717 * 0.03044 * 4 3 2 26 26 H 1.07997 * 119.82150 * 179.97438 * 5 4 3 27 27 H 1.07999 * 119.86626 * 179.97438 * 6 5 4 28 28 H 1.08000 * 120.04563 * 180.30181 * 7 6 5 29 29 H 0.97005 * 119.99722 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2933 2.3739 -0.0006 5 6 1.9217 3.6043 -0.0011 6 6 3.3041 3.6843 -0.0016 7 6 4.0668 2.5356 0.0047 8 6 3.4439 1.2864 -0.0005 9 6 4.2553 0.0519 0.0001 10 7 5.5696 -0.0518 -0.0052 11 6 6.0044 -1.3062 -0.0085 12 6 7.3868 -1.5963 -0.0149 13 1 8.1074 -0.7919 -0.0176 14 6 7.8223 -2.9253 -0.0177 15 7 6.9491 -3.9000 -0.0149 16 14 9.6505 -3.3090 -0.0254 17 1 10.2836 -2.7265 1.1850 18 1 9.8473 -4.7809 -0.0280 19 1 10.2738 -2.7246 -1.2400 20 7 5.1094 -2.2718 -0.0067 21 16 3.6829 -1.6243 0.0000 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8899 25 1 0.2147 2.3192 -0.0005 26 1 1.3315 4.5087 -0.0020 27 1 3.7869 4.6503 -0.0024 28 1 5.1448 2.6022 0.0092 29 1 7.2512 -4.8218 -0.0165 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259594489.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:08 Heat of formation + Delta-G solvation = 19.641711 kcal Electronic energy + Delta-G solvation = -16555.303927 eV Core-core repulsion = 13762.880277 eV Total energy + Delta-G solvation = -2792.423650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12484 -40.32747 -38.24107 -35.46452 -33.51910 -31.21802 -31.06794 -29.32776 -28.05330 -25.73193 -23.30453 -22.86876 -20.82319 -19.29797 -19.14025 -18.63955 -17.05954 -16.72805 -16.66083 -16.63616 -15.55952 -15.46270 -15.16102 -14.61954 -14.48277 -13.64851 -13.25329 -13.17063 -12.89739 -12.89155 -12.57251 -12.18509 -11.96043 -11.84662 -11.82879 -11.46599 -11.10400 -11.07567 -10.35269 -10.07375 -9.43693 -8.87662 -8.49821 -6.65484 -0.34693 0.48801 0.91371 0.96188 1.36456 1.41708 1.52125 1.93869 2.21284 2.21343 2.58801 2.87789 3.28911 3.34103 3.94566 4.11193 4.32952 4.41095 4.50743 4.51021 4.62627 4.79002 4.83667 5.06637 5.14952 5.32529 5.44500 5.53641 5.62309 5.87881 5.98474 6.48215 6.56113 6.66790 7.50903 8.42359 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.034580 B = 0.005705 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.523336 B = 4906.409704 C = 5700.776331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.141 3.859 4 C -0.204 4.204 5 C -0.054 4.054 6 C -0.157 4.157 7 C -0.056 4.056 8 C -0.084 4.084 9 C 0.073 3.927 10 N -0.529 5.529 11 C 0.314 3.686 12 C -0.448 4.448 13 H 0.090 0.910 14 C 0.018 3.982 15 N -0.784 5.784 16 Si 1.007 2.993 17 H -0.256 1.256 18 H -0.266 1.266 19 H -0.256 1.256 20 N -0.602 5.602 21 S 0.208 5.792 22 H 0.075 0.925 23 H 0.109 0.891 24 H 0.075 0.925 25 H 0.168 0.832 26 H 0.172 0.828 27 H 0.158 0.842 28 H 0.120 0.880 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.742 12.711 0.030 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.092 3.908 4 C -0.222 4.222 5 C -0.073 4.073 6 C -0.175 4.175 7 C -0.078 4.078 8 C -0.088 4.088 9 C -0.213 4.213 10 N -0.253 5.253 11 C 0.053 3.947 12 C -0.494 4.494 13 H 0.108 0.892 14 C -0.201 4.201 15 N -0.412 5.412 16 Si 0.825 3.175 17 H -0.180 1.180 18 H -0.190 1.190 19 H -0.180 1.180 20 N -0.441 5.441 21 S 0.348 5.652 22 H 0.094 0.906 23 H 0.128 0.872 24 H 0.094 0.906 25 H 0.186 0.814 26 H 0.190 0.810 27 H 0.175 0.825 28 H 0.138 0.862 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.111 11.024 0.029 17.129 hybrid contribution 1.509 -0.039 -0.002 1.510 sum -11.602 10.985 0.027 15.977 Atomic orbital electron populations 1.23442 0.75863 1.05556 1.02956 1.86165 1.24005 1.26554 1.87623 1.19227 0.90129 0.86350 0.95131 1.21501 1.01483 0.90762 1.08474 1.21572 0.94240 0.98139 0.93328 1.21344 0.94546 0.98009 1.03569 1.21270 1.00536 0.90635 0.95394 1.17394 0.89596 0.89705 1.12111 1.28381 0.92708 1.00794 0.99418 1.69157 1.10934 1.21875 1.23306 1.20546 0.97470 0.81025 0.95611 1.19138 0.88304 0.94158 1.47762 0.89160 1.27008 1.05830 0.94848 0.92423 1.70134 1.37786 1.00644 1.32606 0.84914 0.74346 0.77981 0.80250 1.18008 1.19031 1.18020 1.74601 1.00164 1.27644 1.41677 1.81661 1.17360 0.97104 1.69067 0.90645 0.87232 0.90645 0.81440 0.81029 0.82464 0.86192 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 15 2 O -0.33 -10.27 7.93 -90.89 -0.72 -10.99 15 3 C 0.14 4.38 6.70 22.80 0.15 4.54 15 4 C -0.20 -4.20 9.03 22.33 0.20 -4.00 15 5 C -0.05 -0.94 10.03 22.31 0.22 -0.71 15 6 C -0.16 -3.48 10.03 22.24 0.22 -3.26 15 7 C -0.06 -1.85 9.72 22.51 0.22 -1.63 15 8 C -0.08 -3.26 5.89 -20.00 -0.12 -3.37 15 9 C 0.07 3.69 7.54 87.20 0.66 4.34 15 10 N -0.53 -30.39 10.62 -220.43 -2.34 -32.73 15 11 C 0.31 19.82 7.17 135.82 0.97 20.79 15 12 C -0.45 -27.38 9.40 23.40 0.22 -27.16 15 13 H 0.09 5.23 7.84 -2.91 -0.02 5.21 15 14 C 0.02 1.00 5.49 85.23 0.47 1.47 15 15 N -0.78 -46.87 11.56 21.81 0.25 -46.62 15 16 Si 1.01 41.76 29.56 68.60 2.03 43.79 15 17 H -0.26 -10.14 7.11 99.48 0.71 -9.44 15 18 H -0.27 -10.35 7.11 99.48 0.71 -9.65 15 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 20 N -0.60 -38.00 9.09 -87.59 -0.80 -38.79 15 21 S 0.21 10.89 21.21 -56.49 -1.20 9.69 15 22 H 0.08 1.02 7.66 -2.39 -0.02 1.00 15 23 H 0.11 1.74 8.14 -2.39 -0.02 1.72 15 24 H 0.08 1.01 7.66 -2.39 -0.02 1.00 15 25 H 0.17 2.14 6.30 -2.91 -0.02 2.12 15 26 H 0.17 1.46 8.06 -2.91 -0.02 1.43 15 27 H 0.16 2.45 8.06 -2.91 -0.02 2.43 15 28 H 0.12 4.29 7.93 -2.91 -0.02 4.27 15 29 H 0.28 15.13 8.30 -92.70 -0.77 14.36 15 Total: -1.00 -80.97 272.06 2.74 -78.23 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.18 Total: 5.00 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 4.33 Total: -7.59 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -2.89 Total: -118.14 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.72 Total: -10.99 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 10.89 SS G_CDS: -1.20 Total: 9.69 kcal Total: -80.97 2.74 -78.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259594489.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.868 kcal (2) G-P(sol) polarization free energy of solvation -80.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds