Wall clock time and date at job start Mon Mar 30 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39530 * 120.75635 * 2 1 4 4 O 1.35539 * 120.37536 * 0.03734 * 3 2 1 5 5 N 1.32478 * 119.25213 * 180.02562 * 3 2 1 6 6 C 1.33492 * 120.89861 * 359.97438 * 5 3 2 7 7 C 1.41574 * 119.17505 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00116 * 180.02562 * 7 6 5 9 9 C 1.40030 * 119.99830 * 359.97438 * 7 6 5 10 10 N 1.30699 * 120.00196 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99784 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46818 * 90.00128 * 11 9 7 13 13 H 1.48490 * 109.47344 * 209.99912 * 11 9 7 14 14 H 1.48498 * 109.47014 * 330.00576 * 11 9 7 15 15 N 1.33288 * 121.64959 * 359.72151 * 6 5 3 16 16 C 1.33149 * 120.65810 * 0.56746 * 15 6 5 17 17 C 1.47565 * 120.47042 * 179.71892 * 16 15 6 18 18 C 1.34969 * 125.27594 * 324.72277 * 17 16 15 19 19 C 1.37739 * 114.71671 * 180.02562 * 18 17 16 20 20 C 1.33787 * 115.08501 * 0.02562 * 19 18 17 21 21 S 1.75869 * 109.74459 * 359.97438 * 20 19 18 22 22 H 1.09000 * 109.47081 * 269.98212 * 1 2 3 23 23 H 1.09003 * 109.47177 * 29.98284 * 1 2 3 24 24 H 1.09000 * 109.47453 * 149.97950 * 1 2 3 25 25 H 0.96700 * 113.99401 * 90.00231 * 4 3 2 26 26 H 0.97001 * 119.99768 * 179.97438 * 10 9 7 27 27 H 1.07999 * 122.64270 * 0.02562 * 18 17 16 28 28 H 1.08004 * 122.45893 * 180.02562 * 19 18 17 29 29 H 1.07993 * 125.12718 * 180.26227 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2205 1.1990 0.0000 4 8 1.5661 2.3860 0.0008 5 7 3.5448 1.1643 -0.0005 6 6 4.2000 0.0012 -0.0005 7 6 5.6157 0.0066 -0.0005 8 1 6.1594 -0.9266 -0.0010 9 6 6.3112 1.2220 -0.0011 10 7 5.6534 2.3514 -0.0011 11 14 8.1792 1.2292 -0.0004 12 1 8.6747 1.2301 -1.4003 13 1 8.6694 2.4439 0.6990 14 1 8.6786 0.0190 0.7005 15 7 3.5547 -1.1650 0.0055 16 6 2.2238 -1.2046 0.0004 17 6 1.5137 -2.4982 0.0009 18 6 1.9295 -3.6159 -0.6311 19 6 1.0964 -4.7032 -0.4863 20 6 0.0048 -4.4864 0.2561 21 16 -0.0065 -2.8220 0.8242 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3634 0.8902 -0.5136 24 1 -0.3634 -0.8898 -0.5141 25 1 1.3768 2.7301 0.8844 26 1 6.1352 3.1933 -0.0011 27 1 2.8435 -3.6548 -1.2051 28 1 1.3089 -5.6606 -0.9388 29 1 -0.7527 -5.2236 0.4773 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259648614.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:35 Heat of formation + Delta-G solvation = 13.296366 kcal Electronic energy + Delta-G solvation = -16769.952433 eV Core-core repulsion = 13977.253628 eV Total energy + Delta-G solvation = -2792.698805 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.22715 -38.70125 -38.05157 -35.90732 -34.06860 -32.96454 -30.24864 -29.58450 -26.50639 -25.54931 -23.48526 -22.99278 -20.62368 -19.80683 -19.08902 -17.89236 -17.81633 -16.91767 -16.44572 -15.88258 -15.13992 -14.96586 -14.75747 -14.32786 -13.85451 -13.72913 -13.47479 -13.33856 -13.21008 -12.95182 -12.85416 -12.70362 -12.44486 -11.99030 -11.66331 -11.34238 -10.97602 -10.87271 -9.96947 -9.49565 -9.27522 -9.23360 -8.48002 -6.80803 -0.27798 0.51453 0.56187 1.03817 1.16725 1.38534 1.48006 1.55496 1.94086 2.17721 2.65234 3.01000 3.57490 3.73134 4.20625 4.25824 4.36498 4.44742 4.56340 4.74420 4.82680 4.87690 5.01944 5.13579 5.18834 5.33053 5.41516 5.58277 5.66515 6.05275 6.30448 6.54607 6.90092 6.98690 8.08012 8.30388 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.026056 B = 0.006374 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.370911 B = 4391.617059 C = 5353.433203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.344 4.344 3 C 0.348 3.652 4 O -0.488 6.488 5 N -0.557 5.557 6 C 0.379 3.621 7 C -0.430 4.430 8 H 0.095 0.905 9 C 0.022 3.978 10 N -0.743 5.743 11 Si 1.003 2.997 12 H -0.260 1.260 13 H -0.261 1.261 14 H -0.254 1.254 15 N -0.605 5.605 16 C 0.244 3.756 17 C -0.170 4.170 18 C -0.111 4.111 19 C -0.144 4.144 20 C -0.207 4.207 21 S 0.159 5.841 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.408 0.592 26 H 0.285 0.715 27 H 0.126 0.874 28 H 0.169 0.831 29 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 -7.751 2.045 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.355 4.355 3 C 0.155 3.845 4 O -0.296 6.296 5 N -0.285 5.285 6 C 0.142 3.858 7 C -0.465 4.465 8 H 0.113 0.887 9 C -0.202 4.202 10 N -0.365 5.365 11 Si 0.821 3.179 12 H -0.184 1.184 13 H -0.185 1.185 14 H -0.177 1.177 15 N -0.327 5.327 16 C 0.093 3.907 17 C -0.287 4.287 18 C -0.144 4.144 19 C -0.173 4.173 20 C -0.343 4.343 21 S 0.424 5.576 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.267 0.733 26 H 0.096 0.904 27 H 0.143 0.857 28 H 0.187 0.813 29 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.807 -6.649 2.364 11.285 hybrid contribution 0.970 -0.206 -0.534 1.127 sum -7.837 -6.855 1.829 10.571 Atomic orbital electron populations 1.20319 0.88426 1.02375 1.01793 1.21289 0.99016 0.92450 1.22732 1.19682 0.88127 0.85072 0.91639 1.84549 1.75140 1.35280 1.34668 1.68818 1.07317 1.30581 1.21750 1.20060 0.95171 0.81152 0.89450 1.19732 0.88273 0.95228 1.43273 0.88722 1.27127 1.06920 0.93789 0.92346 1.70233 1.39777 0.99126 1.27378 0.84909 0.73675 0.79550 0.79752 1.18446 1.18522 1.17717 1.68839 1.08317 1.30319 1.25180 1.19259 0.89327 0.90708 0.91393 1.22693 1.01542 0.95901 1.08580 1.20548 1.01059 0.91893 1.00927 1.20227 0.94591 1.00106 1.02407 1.26403 1.03748 0.99739 1.04434 1.83933 1.17006 1.05846 1.50815 0.91405 0.91490 0.91422 0.73324 0.90397 0.85656 0.81342 0.77875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.45 8.27 71.23 0.59 -1.86 15 2 C -0.34 -15.86 5.99 -19.08 -0.11 -15.98 15 3 C 0.35 17.76 7.80 84.91 0.66 18.43 15 4 O -0.49 -20.98 12.74 -88.43 -1.13 -22.11 15 5 N -0.56 -32.64 7.87 -307.19 -2.42 -35.06 15 6 C 0.38 22.61 7.37 135.19 1.00 23.60 15 7 C -0.43 -24.49 9.37 23.53 0.22 -24.27 15 8 H 0.09 5.17 7.85 -2.91 -0.02 5.15 15 9 C 0.02 1.13 5.50 85.30 0.47 1.60 15 10 N -0.74 -40.40 11.42 21.83 0.25 -40.15 15 11 Si 1.00 38.17 29.56 68.60 2.03 40.19 15 12 H -0.26 -9.53 7.11 99.48 0.71 -8.83 15 13 H -0.26 -9.27 7.11 99.48 0.71 -8.56 15 14 H -0.25 -9.34 7.11 99.48 0.71 -8.63 15 15 N -0.60 -33.80 10.24 -183.47 -1.88 -35.68 15 16 C 0.24 11.89 6.68 41.88 0.28 12.17 15 17 C -0.17 -6.60 5.69 23.98 0.14 -6.46 15 18 C -0.11 -3.88 10.01 21.40 0.21 -3.66 15 19 C -0.14 -3.62 10.16 21.14 0.21 -3.40 15 20 C -0.21 -4.51 11.23 66.81 0.75 -3.76 15 21 S 0.16 4.45 19.97 -56.49 -1.13 3.32 15 22 H 0.07 2.06 8.02 -2.39 -0.02 2.04 15 23 H 0.07 2.22 7.62 -2.39 -0.02 2.20 15 24 H 0.07 2.19 5.80 -2.67 -0.02 2.17 15 25 H 0.41 13.12 9.06 -74.06 -0.67 12.45 15 26 H 0.29 13.81 8.29 -92.71 -0.77 13.04 15 27 H 0.13 4.70 8.06 -2.91 -0.02 4.67 15 28 H 0.17 3.10 8.06 -2.91 -0.02 3.08 15 29 H 0.20 2.67 8.06 -2.91 -0.02 2.64 15 Total: -1.00 -72.33 272.01 0.68 -71.65 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.53 Total: 21.42 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 4.42 Total: -3.60 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -4.05 Total: -110.88 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -1.13 Total: -22.11 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.19 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.13 Total: 3.32 kcal Total: -72.33 0.68 -71.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259648614.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.951 kcal (2) G-P(sol) polarization free energy of solvation -72.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds