Wall clock time and date at job start Mon Mar 30 2020 06:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30407 * 122.57123 * 2 1 4 4 C 1.30618 * 117.53207 * 180.21185 * 3 2 1 5 5 N 1.37815 * 125.12695 * 179.80620 * 4 3 2 6 6 C 1.38742 * 120.00308 * 354.77568 * 5 4 3 7 7 C 1.39636 * 120.53257 * 185.21447 * 6 5 4 8 8 C 1.38123 * 118.33101 * 179.80056 * 7 6 5 9 9 N 1.32559 * 119.19305 * 0.47624 * 8 7 6 10 10 C 1.31781 * 121.01315 * 359.74645 * 9 8 7 11 11 N 1.31761 * 121.83203 * 0.02562 * 10 9 8 12 12 S 1.76080 * 109.74247 * 359.54342 * 4 3 2 13 13 C 1.38495 * 122.56845 * 179.71147 * 2 1 3 14 14 C 1.39907 * 126.08520 * 359.97438 * 13 2 1 15 15 H 1.08002 * 119.99643 * 0.02562 * 14 13 2 16 16 C 1.39919 * 120.00274 * 179.97438 * 14 13 2 17 17 N 1.30997 * 119.99560 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48487 * 109.47284 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46740 * 120.00646 * 18 16 14 21 21 H 1.48497 * 109.46718 * 239.99904 * 18 16 14 22 22 H 1.09005 * 109.46975 * 270.28975 * 1 2 3 23 23 H 1.08998 * 109.47193 * 30.28845 * 1 2 3 24 24 H 1.09006 * 109.47286 * 150.29322 * 1 2 3 25 25 H 0.97007 * 119.99974 * 174.49980 * 5 4 3 26 26 H 1.07997 * 120.83283 * 0.02562 * 7 6 5 27 27 H 1.08001 * 120.40728 * 180.24214 * 8 7 6 28 28 H 1.07994 * 119.08784 * 179.97438 * 10 9 8 29 29 H 0.96998 * 119.99426 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2090 1.0990 0.0000 4 6 3.5102 0.9842 -0.0043 5 7 4.3991 2.0374 -0.0088 6 6 3.9318 3.3392 -0.1184 7 6 4.8252 4.4062 -0.2332 8 6 4.3103 5.6831 -0.3438 9 7 2.9959 5.8539 -0.3280 10 6 2.1790 4.8262 -0.2136 11 7 2.6262 3.5911 -0.1100 12 16 3.9571 -0.7189 0.0041 13 6 2.2525 -1.1672 0.0059 14 6 1.7433 -2.4702 0.0129 15 1 0.6755 -2.6327 0.0138 16 6 2.6172 -3.5629 0.0178 17 7 3.9122 -3.3658 0.0163 18 14 1.9371 -5.3027 0.0266 19 1 0.4530 -5.2541 0.0264 20 1 2.4085 -6.0244 -1.1827 21 1 2.4095 -6.0126 1.2423 22 1 -0.3633 0.0052 1.0277 23 1 -0.3633 0.8874 -0.5183 24 1 -0.3634 -0.8926 -0.5093 25 1 5.3512 1.8688 0.0687 26 1 5.8918 4.2370 -0.2390 27 1 4.9707 6.5325 -0.4383 28 1 1.1134 5.0011 -0.2037 29 1 4.5180 -4.1233 0.0201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259654865.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:49 Heat of formation + Delta-G solvation = 81.608346 kcal Electronic energy + Delta-G solvation = -16472.326172 eV Core-core repulsion = 13714.882348 eV Total energy + Delta-G solvation = -2757.443824 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.31293 -37.75851 -35.69625 -34.11369 -32.31993 -30.91064 -29.52458 -27.90299 -24.43363 -23.66117 -23.61406 -21.41741 -19.07196 -17.82787 -17.56984 -16.45384 -15.75824 -15.18311 -15.00618 -14.56217 -14.44121 -14.05519 -13.30975 -13.04756 -12.79235 -12.01151 -11.98570 -11.92647 -11.65220 -11.51432 -10.84816 -10.74912 -10.46648 -10.19986 -9.92886 -9.56821 -9.42604 -8.63276 -8.51066 -7.75111 -7.62316 -7.13501 -6.82137 -4.49523 1.50852 1.77045 2.47766 2.78872 2.85362 2.91519 3.00277 3.51773 3.69890 3.92405 4.20433 4.52339 4.70885 4.90873 4.97728 5.24590 5.50988 5.83526 5.99841 6.20717 6.59308 6.66939 6.78918 6.81753 6.87098 7.16758 7.33801 7.47293 7.72304 7.95321 8.01770 8.28075 8.39539 8.89484 9.65225 9.81111 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.045410 B = 0.005217 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.462075 B = 5365.562935 C = 5963.093773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 C -0.137 4.137 3 N -0.397 5.397 4 C 0.047 3.953 5 N -0.585 5.585 6 C 0.427 3.573 7 C -0.302 4.302 8 C 0.163 3.837 9 N -0.581 5.581 10 C 0.323 3.677 11 N -0.511 5.511 12 S 0.100 5.900 13 C 0.008 3.992 14 C -0.364 4.364 15 H 0.103 0.897 16 C 0.047 3.953 17 N -0.779 5.779 18 Si 0.938 3.062 19 H -0.255 1.255 20 H -0.269 1.269 21 H -0.269 1.269 22 H 0.036 0.964 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.419 0.581 26 H 0.133 0.867 27 H 0.156 0.844 28 H 0.186 0.814 29 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 3.787 -0.205 4.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.273 4.273 3 N -0.112 5.112 4 C -0.311 4.311 5 N -0.211 5.211 6 C 0.180 3.820 7 C -0.332 4.332 8 C 0.001 3.999 9 N -0.301 5.301 10 C 0.032 3.968 11 N -0.233 5.233 12 S 0.349 5.651 13 C -0.115 4.115 14 C -0.401 4.401 15 H 0.121 0.879 16 C -0.173 4.173 17 N -0.407 5.407 18 Si 0.762 3.238 19 H -0.178 1.178 20 H -0.194 1.194 21 H -0.194 1.194 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.255 0.745 26 H 0.151 0.849 27 H 0.173 0.827 28 H 0.203 0.797 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.721 3.731 -0.187 4.621 hybrid contribution 0.410 -1.044 0.047 1.123 sum 3.131 2.687 -0.140 4.128 Atomic orbital electron populations 1.19642 0.90050 0.99887 0.99319 1.19667 0.95746 0.85491 1.26368 1.65265 1.03117 1.31666 1.11191 1.23793 0.90472 0.91607 1.25242 1.40676 1.07528 1.00189 1.72665 1.18684 0.89593 0.85382 0.88364 1.21990 1.00823 0.94250 1.16093 1.22635 0.91798 0.95290 0.90200 1.68347 1.04502 1.36255 1.21020 1.24766 1.00254 0.82672 0.89067 1.68490 1.13549 1.22959 1.18276 1.85062 1.08861 0.93969 1.77246 1.22864 0.92347 0.97277 0.99048 1.19212 0.95734 0.88264 1.36887 0.87889 1.26251 0.94525 1.03601 0.92967 1.68863 1.03395 1.34970 1.33447 0.85702 0.80535 0.78645 0.78959 1.17839 1.19369 1.19359 0.94504 0.93653 0.93162 0.74457 0.84922 0.82717 0.79739 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.64 10.01 36.01 0.36 -0.28 15 2 C -0.14 -3.50 6.84 -83.10 -0.57 -4.07 15 3 N -0.40 -10.24 8.45 -9.27 -0.08 -10.32 15 4 C 0.05 1.13 8.25 -87.68 -0.72 0.41 15 5 N -0.59 -11.61 5.50 -11.85 -0.07 -11.67 15 6 C 0.43 8.26 7.47 -154.60 -1.15 7.11 15 7 C -0.30 -4.57 10.04 -39.10 -0.39 -4.97 15 8 C 0.16 2.35 11.29 -17.28 -0.20 2.16 15 9 N -0.58 -9.64 10.43 -14.66 -0.15 -9.79 15 10 C 0.32 5.75 12.28 -92.19 -1.13 4.62 15 11 N -0.51 -10.74 8.25 -13.77 -0.11 -10.85 15 12 S 0.10 2.40 20.47 -107.50 -2.20 0.20 15 13 C 0.01 0.22 6.23 -38.86 -0.24 -0.03 15 14 C -0.36 -8.80 8.88 -38.33 -0.34 -9.14 15 15 H 0.10 2.34 6.85 -52.49 -0.36 1.98 15 16 C 0.05 1.06 5.50 -17.28 -0.09 0.96 15 17 N -0.78 -17.93 10.74 55.55 0.60 -17.34 15 18 Si 0.94 16.72 29.56 -169.99 -5.03 11.69 15 19 H -0.26 -4.47 7.11 56.52 0.40 -4.07 15 20 H -0.27 -4.73 7.11 56.52 0.40 -4.33 15 21 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 22 H 0.04 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.04 0.95 8.14 -51.93 -0.42 0.52 15 24 H 0.05 1.02 7.06 -51.93 -0.37 0.65 15 25 H 0.42 6.74 8.84 -40.82 -0.36 6.38 15 26 H 0.13 1.56 8.06 -52.49 -0.42 1.14 15 27 H 0.16 1.61 8.06 -52.49 -0.42 1.19 15 28 H 0.19 2.77 8.06 -52.49 -0.42 2.35 15 29 H 0.30 6.13 8.30 -40.82 -0.34 5.79 15 LS Contribution 273.02 15.07 4.11 4.11 Total: -1.00 -29.82 273.02 -9.74 -39.57 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -2.34 Total: 7.62 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -4.48 Total: -3.22 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.19 Total: -59.97 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.20 Total: 0.20 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.82 -9.74 -39.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259654865.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.175 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds