Wall clock time and date at job start Mon Mar 30 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48497 * 109.47108 * 269.99671 * 3 2 1 5 5 H 1.48495 * 109.47230 * 29.99982 * 3 2 1 6 6 H 1.48501 * 109.47031 * 149.99911 * 3 2 1 7 7 C 1.37874 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99745 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00316 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47213 * 59.98958 * 9 7 2 11 11 N 1.46907 * 109.46826 * 299.99356 * 9 7 2 12 12 C 1.50704 * 109.47386 * 179.97438 * 9 7 2 13 13 C 1.39310 * 119.12391 * 124.99741 * 12 9 7 14 14 C 1.36599 * 119.93261 * 180.02562 * 13 12 9 15 15 C 1.40743 * 118.15642 * 359.97438 * 14 13 12 16 16 C 1.40445 * 121.35639 * 180.02562 * 15 14 13 17 17 C 1.36114 * 119.63217 * 179.97438 * 16 15 14 18 18 C 1.39490 * 120.85134 * 359.97438 * 17 16 15 19 19 Cl 1.73593 * 119.48178 * 180.02562 * 18 17 16 20 20 C 1.36193 * 121.03391 * 359.78130 * 18 17 16 21 21 C 1.40560 * 119.74946 * 0.47398 * 20 18 17 22 22 N 1.31095 * 119.12250 * 305.02089 * 12 9 7 23 23 H 0.96997 * 119.99612 * 359.97438 * 1 2 3 24 24 H 1.00893 * 110.99637 * 299.99849 * 11 9 7 25 25 H 1.00899 * 110.99310 * 63.95588 * 11 9 7 26 26 H 1.07996 * 120.03445 * 359.97438 * 13 12 9 27 27 H 1.08001 * 120.92036 * 180.02562 * 14 13 12 28 28 H 1.07993 * 120.18798 * 359.95524 * 16 15 14 29 29 H 1.07991 * 119.57559 * 180.02562 * 17 16 15 30 30 H 1.08005 * 120.12948 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6246 -2.5570 -0.8896 11 7 0.4062 -2.5767 1.1998 12 6 2.2304 -3.6446 0.0005 13 6 2.1404 -4.6136 0.9975 14 6 3.0199 -5.6586 1.0135 15 6 3.9996 -5.7178 0.0048 16 6 4.9370 -6.7625 -0.0432 17 6 5.8691 -6.7854 -1.0349 18 6 5.9055 -5.7842 -2.0055 19 17 7.1092 -5.8488 -3.2547 20 6 5.0085 -4.7596 -1.9913 21 6 4.0345 -4.6992 -0.9797 22 7 3.1445 -3.7025 -0.9373 23 1 -0.4849 0.8400 0.0004 24 1 0.9639 -2.5252 2.0390 25 1 -0.3012 -1.8572 1.1908 26 1 1.3767 -4.5381 1.7573 27 1 2.9645 -6.4189 1.7786 28 1 4.9186 -7.5433 0.7027 29 1 6.5891 -7.5894 -1.0711 30 1 5.0498 -3.9923 -2.7504 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259708583.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:56 Heat of formation + Delta-G solvation = 24.380821 kcal Electronic energy + Delta-G solvation = -16509.094679 eV Core-core repulsion = 13714.832826 eV Total energy + Delta-G solvation = -2794.261853 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.76505 -38.81506 -37.41038 -36.06919 -34.39290 -33.39919 -31.06709 -30.68234 -28.10814 -25.72278 -24.53848 -23.16090 -22.46979 -19.01455 -18.68018 -18.10223 -17.79195 -16.53962 -16.05731 -15.98953 -15.43936 -15.36999 -14.77246 -14.31196 -14.24626 -14.09852 -13.75816 -13.27784 -13.04560 -12.86153 -12.79988 -12.47577 -12.12987 -12.00376 -11.89109 -11.75471 -11.32403 -10.75637 -10.21224 -9.51416 -9.29882 -9.20046 -8.16302 -6.37441 -0.55857 -0.17783 1.01728 1.05715 1.34621 1.37009 1.46406 1.90723 2.35976 3.00721 3.16108 3.37429 3.64908 3.88709 3.97930 4.11848 4.14973 4.31141 4.53443 4.70141 4.79200 4.97367 4.99360 5.16239 5.21546 5.37136 5.38040 5.61477 5.64067 5.86255 6.01262 6.58240 6.81720 7.05976 7.22787 7.37970 8.80593 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.023591 B = 0.005473 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.613157 B = 5115.062689 C = 6061.036452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.024 3.976 3 Si 0.957 3.043 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.039 0.961 9 C 0.252 3.748 10 H 0.019 0.981 11 N -0.832 5.832 12 C 0.182 3.818 13 C -0.165 4.165 14 C -0.051 4.051 15 C -0.132 4.132 16 C -0.059 4.059 17 C -0.125 4.125 18 C -0.011 4.011 19 Cl -0.062 7.062 20 C -0.113 4.113 21 C 0.111 3.889 22 N -0.513 5.513 23 H 0.269 0.731 24 H 0.323 0.677 25 H 0.352 0.648 26 H 0.160 0.840 27 H 0.186 0.814 28 H 0.182 0.818 29 H 0.169 0.831 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.282 -14.990 2.026 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.057 0.943 9 C 0.141 3.859 10 H 0.037 0.963 11 N -0.362 5.362 12 C 0.030 3.970 13 C -0.185 4.185 14 C -0.076 4.076 15 C -0.134 4.134 16 C -0.077 4.077 17 C -0.143 4.143 18 C -0.040 4.040 19 Cl -0.033 7.033 20 C -0.133 4.133 21 C -0.011 4.011 22 N -0.223 5.223 23 H 0.079 0.921 24 H 0.133 0.867 25 H 0.167 0.833 26 H 0.177 0.823 27 H 0.203 0.797 28 H 0.199 0.801 29 H 0.186 0.814 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.125 -14.990 0.931 18.113 hybrid contribution 0.546 1.935 0.119 2.014 sum 10.671 -13.056 1.050 16.894 Atomic orbital electron populations 1.69805 1.06587 1.28062 1.50887 1.25651 0.95813 1.02039 0.94097 0.85573 0.78559 0.79475 0.78058 1.20684 1.19832 1.20161 1.21813 0.92903 0.92047 1.51715 0.94279 1.17610 0.88642 0.88475 0.91187 0.96288 1.59403 1.17814 1.55437 1.03554 1.21987 0.91482 0.94458 0.89076 1.22057 1.01406 0.94706 1.00354 1.21929 0.91277 0.97629 0.96763 1.19241 0.99619 0.97342 0.97233 1.21349 0.91617 0.96501 0.98236 1.21059 1.01021 0.98615 0.93653 1.20661 0.92765 0.97240 0.93294 1.98364 1.54703 1.98187 1.52060 1.20619 0.94638 0.99155 0.98873 1.19112 0.94881 0.91757 0.95373 1.67758 1.04647 1.23569 1.26325 0.92141 0.86676 0.83255 0.82263 0.79692 0.80075 0.81372 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.63 11.54 21.45 0.25 -50.38 16 2 C 0.02 1.33 5.38 84.65 0.46 1.78 16 3 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.54 -30.63 8.51 25.60 0.22 -30.42 16 8 H 0.04 2.30 7.67 -2.91 -0.02 2.28 16 9 C 0.25 13.03 3.18 43.42 0.14 13.17 16 10 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 11 N -0.83 -37.98 7.91 -174.94 -1.38 -39.36 16 12 C 0.18 8.26 6.12 42.93 0.26 8.53 16 13 C -0.17 -5.84 9.11 22.14 0.20 -5.64 16 14 C -0.05 -1.38 9.89 22.50 0.22 -1.15 16 15 C -0.13 -3.91 5.74 -21.27 -0.12 -4.03 16 16 C -0.06 -1.18 9.77 22.31 0.22 -0.96 16 17 C -0.13 -2.53 9.73 22.08 0.21 -2.31 16 18 C -0.01 -0.29 6.27 22.10 0.14 -0.15 16 19 Cl -0.06 -1.43 28.91 -2.72 -0.08 -1.50 16 20 C -0.11 -3.82 9.72 22.36 0.22 -3.60 16 21 C 0.11 4.26 6.60 40.28 0.27 4.52 16 22 N -0.51 -23.92 9.90 -176.77 -1.75 -25.67 16 23 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 24 H 0.32 13.67 8.24 -89.70 -0.74 12.93 16 25 H 0.35 17.38 7.08 -89.69 -0.63 16.74 16 26 H 0.16 5.15 6.58 -2.91 -0.02 5.13 16 27 H 0.19 3.02 8.06 -2.91 -0.02 2.99 16 28 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 30 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -64.77 277.39 1.31 -63.46 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.18 Total: 27.45 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 2.43 Total: -20.27 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -2.89 Total: -115.42 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.50 kcal Total: -64.77 1.31 -63.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259708583.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.839 kcal (2) G-P(sol) polarization free energy of solvation -64.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds