Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00210 * 2 1 4 4 H 1.48500 * 109.47134 * 269.99995 * 3 2 1 5 5 H 1.48499 * 109.46796 * 29.99925 * 3 2 1 6 6 H 1.48498 * 109.47384 * 149.99701 * 3 2 1 7 7 C 1.37874 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00033 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00421 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.47395 * 300.00278 * 9 7 2 11 11 N 1.46905 * 109.47213 * 60.00166 * 9 7 2 12 12 C 1.50698 * 109.47446 * 180.02562 * 9 7 2 13 13 C 1.39320 * 119.12827 * 124.99868 * 12 9 7 14 14 C 1.36591 * 119.93799 * 180.02562 * 13 12 9 15 15 C 1.40747 * 118.15559 * 359.97438 * 14 13 12 16 16 C 1.40443 * 121.35581 * 179.97438 * 15 14 13 17 17 C 1.36105 * 119.63405 * 180.02562 * 16 15 14 18 18 C 1.39488 * 120.85263 * 0.02562 * 17 16 15 19 19 Cl 1.73595 * 119.48554 * 179.97438 * 18 17 16 20 20 C 1.36201 * 121.03612 * 359.97438 * 18 17 16 21 21 C 1.40557 * 119.74247 * 0.04319 * 20 18 17 22 22 N 1.31094 * 119.12744 * 305.02379 * 12 9 7 23 23 H 0.97001 * 120.00162 * 0.02562 * 1 2 3 24 24 H 1.00899 * 110.99544 * 59.99828 * 11 9 7 25 25 H 1.00902 * 110.99999 * 183.95686 * 11 9 7 26 26 H 1.07997 * 120.03065 * 359.97438 * 13 12 9 27 27 H 1.07994 * 120.92101 * 179.97438 * 14 13 12 28 28 H 1.08000 * 120.18690 * 0.05182 * 16 15 14 29 29 H 1.08002 * 119.58061 * 179.72757 * 17 16 15 30 30 H 1.07995 * 120.12955 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 1 3.8752 -0.6804 -0.8888 11 7 4.0007 -0.5013 1.2006 12 6 4.0138 -2.6148 0.0010 13 6 4.8983 -3.0213 -0.9957 14 6 5.3637 -4.3054 -1.0119 15 6 4.9246 -5.1837 -0.0035 16 6 5.3599 -6.5181 0.0437 17 6 4.9125 -7.3373 1.0343 18 6 4.0260 -6.8689 2.0041 19 17 3.4776 -7.9446 3.2513 20 6 3.5840 -5.5807 1.9879 21 6 4.0238 -4.7052 0.9801 22 7 3.6065 -3.4357 0.9384 23 1 -0.4850 0.8400 -0.0004 24 1 3.6768 -0.9587 2.0396 25 1 5.0072 -0.4312 1.1925 26 1 5.2152 -2.3220 -1.7552 27 1 6.0494 -4.6375 -1.7772 28 1 6.0461 -6.8922 -0.7016 29 1 5.2443 -8.3645 1.0673 30 1 2.8980 -5.2334 2.7463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259708587.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = 53.172380 kcal Electronic energy + Delta-G solvation = -16560.218345 eV Core-core repulsion = 13767.204987 eV Total energy + Delta-G solvation = -2793.013358 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65120 -37.69745 -36.30980 -34.32260 -33.24007 -31.75026 -29.92409 -29.75232 -26.49194 -24.28175 -23.34958 -22.14365 -20.57608 -18.16295 -17.19067 -16.63080 -16.22786 -15.00598 -14.66040 -14.38050 -14.35831 -14.06705 -13.83615 -13.36313 -13.01442 -12.74098 -12.29370 -11.95734 -11.81395 -11.55471 -11.11906 -11.02109 -10.71115 -10.28510 -10.26551 -10.00663 -9.30179 -8.98157 -8.52164 -8.40495 -8.16186 -7.24320 -5.97237 -4.06467 0.48424 0.90680 2.04044 2.12522 2.95694 3.50951 3.62356 3.92590 4.29378 4.49790 4.68008 4.71587 4.89653 4.93824 5.07276 5.15940 5.28425 5.35179 5.71292 5.78879 5.91519 5.94961 5.97367 6.16434 6.22478 6.39835 6.53358 6.81090 6.97921 7.52145 8.13970 8.30625 8.41631 8.71345 9.05706 9.65120 11.12635 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.005282 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.086610 B = 5299.455283 C = 5892.889764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.084 3.916 3 Si 0.865 3.135 4 H -0.297 1.297 5 H -0.303 1.303 6 H -0.193 1.193 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.229 3.771 10 H 0.053 0.947 11 N -0.826 5.826 12 C 0.172 3.828 13 C -0.161 4.161 14 C -0.069 4.069 15 C -0.119 4.119 16 C -0.078 4.078 17 C -0.126 4.126 18 C -0.022 4.022 19 Cl -0.074 7.074 20 C -0.078 4.078 21 C 0.140 3.860 22 N -0.451 5.451 23 H 0.263 0.737 24 H 0.340 0.660 25 H 0.305 0.695 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.373 -12.793 0.783 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.120 4.120 3 Si 0.692 3.308 4 H -0.225 1.225 5 H -0.231 1.231 6 H -0.114 1.114 7 C -0.549 4.549 8 H 0.091 0.909 9 C 0.119 3.881 10 H 0.071 0.929 11 N -0.355 5.355 12 C 0.017 3.983 13 C -0.182 4.182 14 C -0.094 4.094 15 C -0.121 4.121 16 C -0.097 4.097 17 C -0.145 4.145 18 C -0.051 4.051 19 Cl -0.045 7.045 20 C -0.098 4.098 21 C 0.017 3.983 22 N -0.159 5.159 23 H 0.072 0.928 24 H 0.154 0.846 25 H 0.115 0.885 26 H 0.155 0.845 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.162 -11.948 1.358 17.103 hybrid contribution 1.101 -0.577 -0.480 1.333 sum 13.263 -12.525 0.878 18.264 Atomic orbital electron populations 1.69952 1.06944 1.27293 1.49315 1.24966 0.94537 0.99966 0.92541 0.87226 0.84654 0.81194 0.77706 1.22471 1.23060 1.11432 1.20662 0.86704 0.94758 1.52811 0.90930 1.18722 0.97350 0.81075 0.90978 0.92900 1.60154 1.12376 1.56906 1.06047 1.23266 0.88327 0.99028 0.87631 1.22036 0.98862 0.96880 1.00383 1.21374 0.98122 0.93270 0.96674 1.18890 1.00283 0.95245 0.97700 1.20864 0.98941 0.92063 0.97796 1.20629 0.98453 1.00678 0.94736 1.20482 1.00074 0.91465 0.93065 1.98363 1.88960 1.64663 1.52485 1.20698 0.99769 0.90780 0.98505 1.18841 0.93974 0.91898 0.93547 1.68051 1.21523 1.01240 1.25112 0.92786 0.84616 0.88457 0.84547 0.84738 0.84847 0.85008 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 2 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 3 Si 0.87 21.19 26.94 -169.99 -4.58 16.61 16 4 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.19 -4.32 5.17 56.52 0.29 -4.03 16 7 C -0.51 -14.18 9.09 -34.44 -0.31 -14.49 16 8 H 0.07 2.28 7.91 -52.48 -0.42 1.86 16 9 C 0.23 5.06 2.41 -70.02 -0.17 4.89 16 10 H 0.05 1.14 7.27 -51.93 -0.38 0.76 16 11 N -0.83 -16.82 5.82 -6.65 -0.04 -16.86 16 12 C 0.17 3.41 5.69 -82.51 -0.47 2.94 16 13 C -0.16 -2.57 9.62 -39.77 -0.38 -2.95 16 14 C -0.07 -0.94 9.89 -39.23 -0.39 -1.33 16 15 C -0.12 -1.77 5.74 -106.80 -0.61 -2.39 16 16 C -0.08 -0.91 9.77 -39.52 -0.39 -1.30 16 17 C -0.13 -1.47 9.73 -39.88 -0.39 -1.86 16 18 C -0.02 -0.30 6.27 -39.85 -0.25 -0.55 16 19 Cl -0.07 -0.89 28.91 -51.86 -1.50 -2.39 16 20 C -0.08 -1.24 9.72 -39.44 -0.38 -1.63 16 21 C 0.14 2.49 6.60 -84.86 -0.56 1.93 16 22 N -0.45 -9.27 9.81 -7.23 -0.07 -9.34 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 24 H 0.34 7.11 8.90 -39.29 -0.35 6.76 16 25 H 0.30 5.25 9.06 -39.29 -0.36 4.89 16 26 H 0.14 1.83 7.92 -52.49 -0.42 1.42 16 27 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.14 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 276.44 15.07 4.17 4.17 Total: -1.00 -31.75 276.44 -8.50 -40.25 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -2.85 Total: 9.02 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -4.40 Total: -14.40 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.66 Total: -53.25 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.58 Total: 16.61 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.75 -8.50 -40.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259708587.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.418 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds