Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00210 * 2 1 4 4 H 1.48500 * 109.47134 * 269.99995 * 3 2 1 5 5 H 1.48499 * 109.46796 * 29.99925 * 3 2 1 6 6 H 1.48498 * 109.47384 * 149.99701 * 3 2 1 7 7 C 1.37874 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00033 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00421 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.47395 * 300.00278 * 9 7 2 11 11 N 1.46905 * 109.47213 * 60.00166 * 9 7 2 12 12 C 1.50698 * 109.47446 * 180.02562 * 9 7 2 13 13 C 1.39320 * 119.12827 * 124.99868 * 12 9 7 14 14 C 1.36591 * 119.93799 * 180.02562 * 13 12 9 15 15 C 1.40747 * 118.15559 * 359.97438 * 14 13 12 16 16 C 1.40443 * 121.35581 * 179.97438 * 15 14 13 17 17 C 1.36105 * 119.63405 * 180.02562 * 16 15 14 18 18 C 1.39488 * 120.85263 * 0.02562 * 17 16 15 19 19 Cl 1.73595 * 119.48554 * 179.97438 * 18 17 16 20 20 C 1.36201 * 121.03612 * 359.97438 * 18 17 16 21 21 C 1.40557 * 119.74247 * 0.04319 * 20 18 17 22 22 N 1.31094 * 119.12744 * 305.02379 * 12 9 7 23 23 H 0.97001 * 120.00162 * 0.02562 * 1 2 3 24 24 H 1.00899 * 110.99544 * 59.99828 * 11 9 7 25 25 H 1.00902 * 110.99999 * 183.95686 * 11 9 7 26 26 H 1.07997 * 120.03065 * 359.97438 * 13 12 9 27 27 H 1.07994 * 120.92101 * 179.97438 * 14 13 12 28 28 H 1.08000 * 120.18690 * 0.05182 * 16 15 14 29 29 H 1.08002 * 119.58061 * 179.72757 * 17 16 15 30 30 H 1.07995 * 120.12955 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 1 3.8752 -0.6804 -0.8888 11 7 4.0007 -0.5013 1.2006 12 6 4.0138 -2.6148 0.0010 13 6 4.8983 -3.0213 -0.9957 14 6 5.3637 -4.3054 -1.0119 15 6 4.9246 -5.1837 -0.0035 16 6 5.3599 -6.5181 0.0437 17 6 4.9125 -7.3373 1.0343 18 6 4.0260 -6.8689 2.0041 19 17 3.4776 -7.9446 3.2513 20 6 3.5840 -5.5807 1.9879 21 6 4.0238 -4.7052 0.9801 22 7 3.6065 -3.4357 0.9384 23 1 -0.4850 0.8400 -0.0004 24 1 3.6768 -0.9587 2.0396 25 1 5.0072 -0.4312 1.1925 26 1 5.2152 -2.3220 -1.7552 27 1 6.0494 -4.6375 -1.7772 28 1 6.0461 -6.8922 -0.7016 29 1 5.2443 -8.3645 1.0673 30 1 2.8980 -5.2334 2.7463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259708587.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = 30.578529 kcal Electronic energy + Delta-G solvation = -16561.198088 eV Core-core repulsion = 13767.204987 eV Total energy + Delta-G solvation = -2793.993100 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.83446 -38.88673 -37.44679 -35.91258 -34.41480 -33.81361 -31.10012 -30.94197 -28.37815 -25.75699 -24.55007 -23.26488 -22.17397 -19.43427 -18.71898 -18.16023 -17.54201 -16.48224 -16.25869 -15.81659 -15.55613 -15.42410 -15.21629 -14.52774 -14.32254 -14.14087 -13.89531 -13.49824 -13.05432 -12.77648 -12.69596 -12.35603 -12.05986 -11.94423 -11.81495 -11.43293 -11.33296 -10.71989 -10.33407 -9.61422 -9.29341 -8.89735 -8.19456 -6.32386 -0.61402 -0.25679 0.98291 1.00369 1.54628 1.62023 1.83842 1.98654 2.64612 3.05262 3.20105 3.35319 3.59748 3.81504 3.92816 4.01752 4.07546 4.22435 4.24651 4.57010 4.70683 4.84256 4.87600 5.01346 5.11901 5.17498 5.30501 5.50472 5.55516 5.79779 6.16787 6.44428 6.78697 6.97490 7.18160 7.43307 8.94842 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.005282 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.086610 B = 5299.455283 C = 5892.889764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.019 3.981 3 Si 0.936 3.064 4 H -0.293 1.293 5 H -0.319 1.319 6 H -0.155 1.155 7 C -0.507 4.507 8 H 0.015 0.985 9 C 0.234 3.766 10 H 0.068 0.932 11 N -0.826 5.826 12 C 0.144 3.856 13 C -0.177 4.177 14 C -0.045 4.045 15 C -0.130 4.130 16 C -0.060 4.060 17 C -0.124 4.124 18 C -0.012 4.012 19 Cl -0.062 7.062 20 C -0.113 4.113 21 C 0.110 3.890 22 N -0.498 5.498 23 H 0.261 0.739 24 H 0.335 0.665 25 H 0.329 0.671 26 H 0.162 0.838 27 H 0.187 0.813 28 H 0.183 0.817 29 H 0.168 0.832 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.372 -14.369 -0.470 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.220 1.220 5 H -0.247 1.247 6 H -0.075 1.075 7 C -0.545 4.545 8 H 0.034 0.966 9 C 0.123 3.877 10 H 0.086 0.914 11 N -0.356 5.356 12 C -0.010 4.010 13 C -0.198 4.198 14 C -0.070 4.070 15 C -0.132 4.132 16 C -0.078 4.078 17 C -0.142 4.142 18 C -0.040 4.040 19 Cl -0.033 7.033 20 C -0.133 4.133 21 C -0.013 4.013 22 N -0.208 5.208 23 H 0.070 0.930 24 H 0.148 0.852 25 H 0.142 0.858 26 H 0.179 0.821 27 H 0.205 0.795 28 H 0.200 0.800 29 H 0.186 0.814 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.194 -13.551 0.105 21.116 hybrid contribution -0.150 -0.379 -0.028 0.408 sum 16.044 -13.930 0.077 21.247 Atomic orbital electron populations 1.70129 1.09171 1.28033 1.52379 1.26000 0.95200 1.04244 0.92385 0.86208 0.84376 0.75399 0.77927 1.22015 1.24722 1.07548 1.20870 0.90152 0.92261 1.51253 0.96615 1.18436 0.93534 0.83826 0.91882 0.91447 1.59835 1.14211 1.56446 1.05100 1.22932 0.90522 0.97896 0.89622 1.22170 0.98794 0.98772 1.00026 1.21908 0.96979 0.91726 0.96430 1.19254 0.99625 0.97166 0.97193 1.21369 0.98213 0.90121 0.98146 1.21081 0.97129 1.02397 0.93590 1.20696 0.99357 0.90590 0.93384 1.98370 1.88906 1.63873 1.52183 1.20642 1.01399 0.92228 0.98988 1.19130 0.95596 0.91236 0.95296 1.67847 1.23205 1.03087 1.26613 0.93042 0.85204 0.85778 0.82056 0.79544 0.79987 0.81405 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.62 13.96 21.44 0.30 -62.32 16 2 C 0.02 1.15 5.47 84.66 0.46 1.61 16 3 Si 0.94 44.63 26.94 68.60 1.85 46.48 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.32 -15.92 7.11 99.48 0.71 -15.21 16 6 H -0.16 -6.42 5.17 99.48 0.51 -5.91 16 7 C -0.51 -29.49 9.09 25.60 0.23 -29.26 16 8 H 0.02 1.05 7.91 -2.91 -0.02 1.03 16 9 C 0.23 10.38 2.41 43.42 0.10 10.49 16 10 H 0.07 2.80 7.27 -2.39 -0.02 2.78 16 11 N -0.83 -32.96 5.82 -174.95 -1.02 -33.98 16 12 C 0.14 5.76 5.69 42.93 0.24 6.00 16 13 C -0.18 -5.25 9.62 22.15 0.21 -5.04 16 14 C -0.05 -1.05 9.89 22.50 0.22 -0.83 16 15 C -0.13 -3.52 5.74 -21.27 -0.12 -3.64 16 16 C -0.06 -1.11 9.77 22.31 0.22 -0.89 16 17 C -0.12 -2.38 9.73 22.07 0.21 -2.16 16 18 C -0.01 -0.30 6.27 22.10 0.14 -0.16 16 19 Cl -0.06 -1.42 28.91 -2.72 -0.08 -1.50 16 20 C -0.11 -3.70 9.72 22.36 0.22 -3.49 16 21 C 0.11 3.94 6.60 40.28 0.27 4.21 16 22 N -0.50 -21.35 9.81 -176.77 -1.73 -23.08 16 23 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 24 H 0.34 14.22 8.90 -89.69 -0.80 13.42 16 25 H 0.33 10.65 9.06 -89.69 -0.81 9.84 16 26 H 0.16 3.80 7.92 -2.91 -0.02 3.77 16 27 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -76.19 276.44 1.12 -75.07 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.61 Total: 22.50 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 2.41 Total: -23.16 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -2.45 Total: -119.38 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.85 Total: 46.48 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -76.19 1.12 -75.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259708587.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.651 kcal (2) G-P(sol) polarization free energy of solvation -76.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds