Wall clock time and date at job start Mon Mar 30 2020 06:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48504 * 109.46958 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46976 * 300.00069 * 3 2 1 6 6 H 1.48493 * 109.47017 * 60.00267 * 3 2 1 7 7 C 1.37878 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00254 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47108 * 300.00435 * 9 7 2 11 11 N 1.46894 * 109.46963 * 60.00440 * 9 7 2 12 12 C 1.50696 * 109.47184 * 180.02562 * 9 7 2 13 13 C 1.39338 * 119.13017 * 125.00072 * 12 9 7 14 14 C 1.36576 * 119.93142 * 180.25685 * 13 12 9 15 15 C 1.40762 * 118.15313 * 359.46336 * 14 13 12 16 16 C 1.40433 * 121.37608 * 180.21536 * 15 14 13 17 17 C 1.36139 * 119.64367 * 180.27602 * 16 15 14 18 18 C 1.39338 * 120.88406 * 0.05092 * 17 16 15 19 19 C 1.36184 * 121.05363 * 359.96896 * 18 17 16 20 20 Cl 1.73602 * 120.14137 * 180.02562 * 19 18 17 21 21 C 1.40711 * 119.72311 * 0.02562 * 19 18 17 22 22 N 1.31089 * 119.12591 * 304.98069 * 12 9 7 23 23 H 0.96999 * 120.00411 * 359.97438 * 1 2 3 24 24 H 1.00907 * 111.00233 * 296.04343 * 11 9 7 25 25 H 1.00897 * 111.00112 * 59.99708 * 11 9 7 26 26 H 1.08002 * 120.02854 * 359.97397 * 13 12 9 27 27 H 1.08002 * 120.91960 * 179.72319 * 14 13 12 28 28 H 1.08000 * 120.17555 * 0.28189 * 16 15 14 29 29 H 1.07995 * 119.56135 * 180.02562 * 17 16 15 30 30 H 1.08005 * 119.47378 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4061 -2.5768 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 6 2.1404 -4.6138 0.9965 14 6 3.0228 -5.6561 1.0152 15 6 3.9987 -5.7184 0.0027 16 6 4.9366 -6.7625 -0.0457 17 6 5.8687 -6.7849 -1.0376 18 6 5.9062 -5.7843 -2.0066 19 6 5.0127 -4.7567 -1.9902 20 17 5.0806 -3.5230 -3.2096 21 6 4.0341 -4.6991 -0.9807 22 7 3.1439 -3.7030 -0.9388 23 1 -0.4851 0.8400 0.0004 24 1 -0.3013 -1.8573 -1.1908 25 1 0.9638 -2.5251 -2.0389 26 1 1.3766 -4.5384 1.7563 27 1 2.9705 -6.4138 1.7830 28 1 4.9183 -7.5436 0.7000 29 1 6.5891 -7.5887 -1.0738 30 1 6.6559 -5.8243 -2.7831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259710469.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:24 Heat of formation + Delta-G solvation = 20.632597 kcal Electronic energy + Delta-G solvation = -16767.620778 eV Core-core repulsion = 13973.196389 eV Total energy + Delta-G solvation = -2794.424388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.71483 -38.59866 -37.32158 -36.13264 -34.16241 -33.29509 -31.17631 -30.58345 -28.06812 -25.82521 -24.59039 -23.02237 -22.31268 -19.15469 -18.62697 -18.11406 -17.41636 -16.57561 -16.04363 -15.79207 -15.56192 -15.26965 -14.88693 -14.76116 -14.13230 -13.84863 -13.26778 -13.20235 -12.91537 -12.81033 -12.76006 -12.53399 -12.25839 -11.95075 -11.87369 -11.63384 -11.15866 -10.72056 -10.19973 -9.66148 -9.23573 -9.02475 -8.14006 -6.34887 -0.53501 -0.09437 1.04319 1.25941 1.32218 1.35386 1.46879 2.03074 2.36348 3.03477 3.19305 3.35678 3.77073 3.83792 4.03838 4.08715 4.26462 4.43662 4.52592 4.63793 4.76421 4.94135 5.03679 5.10315 5.25138 5.41517 5.49533 5.64749 5.65615 5.93921 6.05961 6.59668 6.87291 7.06623 7.23758 7.38508 8.82170 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.022379 B = 0.006858 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.869361 B = 4082.016074 C = 4805.429313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.954 3.046 4 H -0.281 1.281 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.037 0.963 9 C 0.252 3.748 10 H 0.034 0.966 11 N -0.837 5.837 12 C 0.184 3.816 13 C -0.180 4.180 14 C -0.047 4.047 15 C -0.126 4.126 16 C -0.077 4.077 17 C -0.116 4.116 18 C -0.085 4.085 19 C -0.048 4.048 20 Cl -0.072 7.072 21 C 0.100 3.900 22 N -0.486 5.486 23 H 0.268 0.732 24 H 0.347 0.653 25 H 0.317 0.683 26 H 0.147 0.853 27 H 0.186 0.814 28 H 0.174 0.826 29 H 0.178 0.822 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.895 -15.263 0.351 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.056 0.944 9 C 0.141 3.859 10 H 0.052 0.948 11 N -0.365 5.365 12 C 0.032 3.968 13 C -0.200 4.200 14 C -0.073 4.073 15 C -0.128 4.128 16 C -0.095 4.095 17 C -0.133 4.133 18 C -0.105 4.105 19 C -0.076 4.076 20 Cl -0.043 7.043 21 C -0.023 4.023 22 N -0.195 5.195 23 H 0.077 0.923 24 H 0.162 0.838 25 H 0.126 0.874 26 H 0.165 0.835 27 H 0.203 0.797 28 H 0.191 0.809 29 H 0.195 0.805 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.633 -15.138 -0.175 18.500 hybrid contribution 0.345 2.067 0.129 2.099 sum 10.978 -13.071 -0.046 17.070 Atomic orbital electron populations 1.69812 1.06534 1.27855 1.51284 1.25619 0.95767 1.01905 0.94297 0.85575 0.78500 0.79949 0.77965 1.20638 1.20408 1.19803 1.21899 0.92896 0.92303 1.51139 0.94439 1.17881 0.88367 0.88262 0.91362 0.94786 1.59422 1.17970 1.55145 1.03997 1.21989 0.91801 0.94064 0.88989 1.22043 1.01909 0.95621 1.00424 1.21832 0.91276 0.97380 0.96794 1.19106 0.99801 0.97189 0.96714 1.21486 0.92430 0.96346 0.99250 1.21236 0.99830 0.98874 0.93403 1.21203 0.97006 0.91925 1.00370 1.20823 0.99277 0.94464 0.93030 1.98350 1.97829 1.54698 1.53389 1.19170 0.95189 0.92608 0.95351 1.67899 1.03810 1.22630 1.25166 0.92257 0.83770 0.87363 0.83491 0.79711 0.80857 0.80508 0.82296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.63 11.54 21.45 0.25 -51.38 16 2 C 0.02 1.34 5.38 84.66 0.46 1.80 16 3 Si 0.95 45.26 29.54 68.60 2.03 47.29 16 4 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.54 -31.05 8.51 25.60 0.22 -30.83 16 8 H 0.04 2.26 7.67 -2.91 -0.02 2.24 16 9 C 0.25 13.20 3.01 43.42 0.13 13.33 16 10 H 0.03 1.88 7.84 -2.39 -0.02 1.86 16 11 N -0.84 -43.09 9.18 -174.97 -1.61 -44.70 16 12 C 0.18 8.44 5.70 42.93 0.24 8.69 16 13 C -0.18 -6.50 9.62 22.15 0.21 -6.29 16 14 C -0.05 -1.31 9.90 22.50 0.22 -1.09 16 15 C -0.13 -3.73 5.74 -21.28 -0.12 -3.86 16 16 C -0.08 -1.49 9.77 22.32 0.22 -1.27 16 17 C -0.12 -1.99 9.95 22.05 0.22 -1.77 16 18 C -0.08 -1.96 9.71 22.06 0.21 -1.75 16 19 C -0.05 -1.62 6.33 22.40 0.14 -1.47 16 20 Cl -0.07 -2.55 28.52 -2.72 -0.08 -2.62 16 21 C 0.10 3.83 6.60 40.32 0.27 4.10 16 22 N -0.49 -22.40 9.29 -176.68 -1.64 -24.04 16 23 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.35 18.74 7.08 -89.69 -0.63 18.11 16 25 H 0.32 16.67 8.90 -89.70 -0.80 15.87 16 26 H 0.15 4.74 7.92 -2.91 -0.02 4.72 16 27 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -68.41 279.57 1.13 -67.28 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.24 Total: 28.59 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 2.42 Total: -20.41 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -3.00 Total: -120.13 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.08 Total: -2.62 kcal Total: -68.41 1.13 -67.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259710469.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.914 kcal (2) G-P(sol) polarization free energy of solvation -68.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds