Wall clock time and date at job start Mon Mar 30 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86801 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47050 * 270.00166 * 3 2 1 5 5 H 1.48495 * 109.47054 * 29.99956 * 3 2 1 6 6 H 1.48496 * 109.46949 * 150.00338 * 3 2 1 7 7 C 1.39855 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.41427 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.42230 * 126.56788 * 180.02562 * 9 7 2 11 11 C 1.35074 * 105.54412 * 179.97438 * 10 9 7 12 12 C 1.50704 * 126.30561 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47087 * 84.99807 * 12 11 10 14 14 C 1.38245 * 119.98463 * 89.99818 * 13 12 11 15 15 C 1.38218 * 120.01168 * 179.97438 * 14 13 12 16 16 C 1.38356 * 119.98567 * 0.02791 * 15 14 13 17 17 Cl 1.73595 * 120.01315 * 179.97438 * 16 15 14 18 18 C 1.38354 * 119.97287 * 359.95302 * 16 15 14 19 19 C 1.38214 * 119.98931 * 0.02562 * 18 16 15 20 20 N 1.35894 * 107.38098 * 0.25989 * 11 10 9 21 21 H 0.97003 * 124.86307 * 179.71748 * 20 11 10 22 22 N 1.28479 * 110.27965 * 359.54967 * 20 11 10 23 23 H 0.97006 * 119.99595 * 0.02562 * 1 2 3 24 24 H 1.07998 * 127.22647 * 359.97438 * 10 9 7 25 25 H 1.08996 * 109.47185 * 324.99505 * 12 11 10 26 26 H 1.09004 * 109.46974 * 204.99809 * 12 11 10 27 27 H 1.07999 * 119.99425 * 359.72540 * 14 13 12 28 28 H 1.07992 * 120.00579 * 179.97438 * 15 14 13 29 29 H 1.07998 * 120.00290 * 180.02562 * 18 16 15 30 30 H 1.08001 * 119.99617 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4401 0.7000 7 6 2.0082 -1.2112 -0.0005 8 1 3.0882 -1.2112 -0.0001 9 6 1.3010 -2.4360 -0.0005 10 6 1.8666 -3.7410 -0.0005 11 6 0.8165 -4.5906 0.0000 12 6 0.8867 -6.0960 0.0008 13 6 1.0340 -6.5913 1.4165 14 6 -0.0900 -6.8738 2.1701 15 6 0.0445 -7.3286 3.4684 16 6 1.3043 -7.5005 4.0138 17 17 1.4740 -8.0710 5.6446 18 6 2.4288 -7.2179 3.2589 19 6 2.2931 -6.7636 1.9607 20 7 -0.3148 -3.8377 -0.0055 21 1 -1.2174 -4.1931 -0.0103 22 7 -0.0179 -2.5877 0.0001 23 1 -0.4850 0.8401 -0.0004 24 1 2.9154 -3.9985 -0.0009 25 1 1.7444 -6.4200 -0.5886 26 1 -0.0269 -6.5025 -0.4331 27 1 -1.0734 -6.7353 1.7457 28 1 -0.8336 -7.5489 4.0571 29 1 3.4124 -7.3523 3.6841 30 1 3.1708 -6.5434 1.3712 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259721339.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:33 Heat of formation + Delta-G solvation = 75.832065 kcal Electronic energy + Delta-G solvation = -16219.063789 eV Core-core repulsion = 13427.033030 eV Total energy + Delta-G solvation = -2792.030760 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47632 -39.18401 -36.52705 -33.52146 -32.88041 -31.03716 -29.99826 -29.06142 -25.79433 -25.25672 -22.80038 -21.48917 -19.95088 -19.43656 -17.12448 -16.18727 -16.15331 -15.42811 -15.26194 -14.53919 -13.91992 -13.50980 -13.47109 -13.10546 -12.85210 -12.63722 -12.30255 -11.76441 -11.42797 -11.32305 -11.27393 -11.05233 -10.81221 -10.72960 -10.36388 -9.83409 -9.17743 -8.99633 -8.54612 -8.31867 -7.54912 -7.28651 -6.22224 -4.08903 1.19299 1.34311 2.12515 3.19749 3.27987 3.31958 3.42736 3.73141 4.24772 4.46771 4.58439 4.78568 4.90067 5.04653 5.29937 5.37662 5.63118 5.66721 5.73961 5.78145 5.97203 6.05937 6.24221 6.27942 6.61182 6.70971 6.85258 7.28662 7.34910 7.52994 7.85691 8.46162 8.86938 9.06919 9.34920 10.32884 10.76280 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.027421 B = 0.004348 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.886432 B = 6437.830645 C = 6846.628391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.452 4.452 8 H 0.076 0.924 9 C 0.190 3.810 10 C -0.278 4.278 11 C -0.017 4.017 12 C -0.005 4.005 13 C -0.056 4.056 14 C -0.106 4.106 15 C -0.110 4.110 16 C -0.043 4.043 17 Cl -0.083 7.083 18 C -0.108 4.108 19 C -0.096 4.096 20 N -0.435 5.435 21 H 0.414 0.586 22 N -0.324 5.324 23 H 0.266 0.734 24 H 0.120 0.880 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 -14.999 4.761 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.041 3.959 10 C -0.309 4.309 11 C -0.145 4.145 12 C -0.044 4.044 13 C -0.057 4.057 14 C -0.124 4.124 15 C -0.128 4.128 16 C -0.070 4.070 17 Cl -0.054 7.054 18 C -0.127 4.127 19 C -0.114 4.114 20 N -0.142 5.142 21 H 0.253 0.747 22 N -0.157 5.157 23 H 0.077 0.923 24 H 0.138 0.862 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.100 -14.322 4.907 15.140 hybrid contribution 0.735 0.198 0.260 0.804 sum 0.634 -14.125 5.167 15.054 Atomic orbital electron populations 1.69968 1.06760 1.27084 1.37597 1.25725 0.94729 1.00178 0.93852 0.86432 0.80244 0.81913 0.78629 1.20014 1.20765 1.19054 1.18515 0.93300 0.88159 1.49119 0.90534 1.19282 0.88079 0.92280 0.96240 1.21316 0.96832 0.93684 1.19088 1.20689 0.89294 0.91754 1.12729 1.18961 1.03002 0.90465 0.91924 1.20038 0.93053 0.95775 0.96815 1.20975 0.98756 0.99178 0.93481 1.20967 0.95760 1.00408 0.95709 1.20860 0.95255 1.04473 0.86402 1.98349 1.98146 1.87760 1.21136 1.21017 0.97634 0.99846 0.94218 1.21032 0.97617 0.98203 0.94559 1.43578 1.06211 1.04949 1.59427 0.74743 1.74722 1.16818 0.93650 1.30494 0.92315 0.86245 0.89488 0.90940 0.85470 0.85305 0.85153 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.76 11.97 55.54 0.66 -22.09 16 2 C 0.07 2.01 5.49 -17.35 -0.10 1.91 16 3 Si 0.90 20.37 29.56 -169.99 -5.02 15.35 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 7 C -0.45 -12.95 9.42 -37.76 -0.36 -13.30 16 8 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 9 C 0.19 5.37 6.78 -84.72 -0.57 4.79 16 10 C -0.28 -6.58 10.89 -39.17 -0.43 -7.01 16 11 C -0.02 -0.35 6.47 -81.92 -0.53 -0.88 16 12 C 0.00 -0.06 5.90 -29.03 -0.17 -0.24 16 13 C -0.06 -0.78 5.12 -104.62 -0.54 -1.32 16 14 C -0.11 -1.37 9.70 -39.59 -0.38 -1.76 16 15 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 16 C -0.04 -0.56 6.32 -39.50 -0.25 -0.81 16 17 Cl -0.08 -0.97 28.96 -51.86 -1.50 -2.47 16 18 C -0.11 -1.37 9.83 -39.55 -0.39 -1.76 16 19 C -0.10 -1.28 9.70 -39.59 -0.38 -1.66 16 20 N -0.44 -9.63 6.86 33.59 0.23 -9.40 16 21 H 0.41 7.53 8.96 -190.43 -1.71 5.82 16 22 N -0.32 -8.98 10.50 32.34 0.34 -8.64 16 23 H 0.27 7.12 8.30 -40.82 -0.34 6.78 16 24 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 25 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 26 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 27 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 28 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 286.18 15.07 4.31 4.31 Total: -1.00 -32.42 286.18 -9.67 -42.09 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.21 Total: 4.65 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -4.48 Total: -23.79 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 1.23 Total: -40.13 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.42 -9.67 -42.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721339.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.920 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds