Wall clock time and date at job start Mon Mar 30 2020 06:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86801 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47050 * 270.00166 * 3 2 1 5 5 H 1.48495 * 109.47054 * 29.99956 * 3 2 1 6 6 H 1.48496 * 109.46949 * 150.00338 * 3 2 1 7 7 C 1.39855 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.41427 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.42230 * 126.56788 * 180.02562 * 9 7 2 11 11 C 1.35074 * 105.54412 * 179.97438 * 10 9 7 12 12 C 1.50704 * 126.30561 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47087 * 84.99807 * 12 11 10 14 14 C 1.38245 * 119.98463 * 89.99818 * 13 12 11 15 15 C 1.38218 * 120.01168 * 179.97438 * 14 13 12 16 16 C 1.38356 * 119.98567 * 0.02791 * 15 14 13 17 17 Cl 1.73595 * 120.01315 * 179.97438 * 16 15 14 18 18 C 1.38354 * 119.97287 * 359.95302 * 16 15 14 19 19 C 1.38214 * 119.98931 * 0.02562 * 18 16 15 20 20 N 1.35894 * 107.38098 * 0.25989 * 11 10 9 21 21 H 0.97003 * 124.86307 * 179.71748 * 20 11 10 22 22 N 1.28479 * 110.27965 * 359.54967 * 20 11 10 23 23 H 0.97006 * 119.99595 * 0.02562 * 1 2 3 24 24 H 1.07998 * 127.22647 * 359.97438 * 10 9 7 25 25 H 1.08996 * 109.47185 * 324.99505 * 12 11 10 26 26 H 1.09004 * 109.46974 * 204.99809 * 12 11 10 27 27 H 1.07999 * 119.99425 * 359.72540 * 14 13 12 28 28 H 1.07992 * 120.00579 * 179.97438 * 15 14 13 29 29 H 1.07998 * 120.00290 * 180.02562 * 18 16 15 30 30 H 1.08001 * 119.99617 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4401 0.7000 7 6 2.0082 -1.2112 -0.0005 8 1 3.0882 -1.2112 -0.0001 9 6 1.3010 -2.4360 -0.0005 10 6 1.8666 -3.7410 -0.0005 11 6 0.8165 -4.5906 0.0000 12 6 0.8867 -6.0960 0.0008 13 6 1.0340 -6.5913 1.4165 14 6 -0.0900 -6.8738 2.1701 15 6 0.0445 -7.3286 3.4684 16 6 1.3043 -7.5005 4.0138 17 17 1.4740 -8.0710 5.6446 18 6 2.4288 -7.2179 3.2589 19 6 2.2931 -6.7636 1.9607 20 7 -0.3148 -3.8377 -0.0055 21 1 -1.2174 -4.1931 -0.0103 22 7 -0.0179 -2.5877 0.0001 23 1 -0.4850 0.8401 -0.0004 24 1 2.9154 -3.9985 -0.0009 25 1 1.7444 -6.4200 -0.5886 26 1 -0.0269 -6.5025 -0.4331 27 1 -1.0734 -6.7353 1.7457 28 1 -0.8336 -7.5489 4.0571 29 1 3.4124 -7.3523 3.6841 30 1 3.1708 -6.5434 1.3712 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259721339.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:32 Heat of formation + Delta-G solvation = 56.774106 kcal Electronic energy + Delta-G solvation = -16219.890205 eV Core-core repulsion = 13427.033030 eV Total energy + Delta-G solvation = -2792.857175 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.27163 -40.21980 -37.48908 -35.37167 -34.27688 -32.06846 -31.86648 -30.50290 -27.64986 -26.81873 -23.78126 -22.62745 -21.86843 -21.17178 -18.26126 -18.16336 -17.68435 -16.47064 -16.41272 -16.30732 -15.35315 -14.86083 -14.48842 -14.43111 -14.37684 -14.09706 -13.92010 -13.09051 -12.87921 -12.68818 -12.52430 -12.39139 -12.29427 -12.16548 -11.74807 -11.66425 -11.15935 -10.31481 -9.96462 -9.54147 -9.49955 -9.09319 -8.25830 -6.20017 0.17035 0.37175 1.16157 1.42398 1.43861 1.57684 1.78908 2.36202 2.44664 2.66326 3.00825 3.67460 3.82916 3.95423 4.00556 4.24646 4.31214 4.41817 4.62630 4.73943 4.84171 4.95638 5.04082 5.26855 5.28370 5.40987 5.48622 5.51917 5.72983 5.86542 5.96356 6.45173 7.01953 7.06533 7.34881 8.39584 8.74515 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.027421 B = 0.004348 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.886432 B = 6437.830645 C = 6846.628391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.023 3.977 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.490 4.490 8 H 0.078 0.922 9 C 0.150 3.850 10 C -0.311 4.311 11 C 0.021 3.979 12 C 0.002 3.998 13 C -0.073 4.073 14 C -0.111 4.111 15 C -0.117 4.117 16 C -0.052 4.052 17 Cl -0.075 7.075 18 C -0.116 4.116 19 C -0.104 4.104 20 N -0.432 5.432 21 H 0.430 0.570 22 N -0.368 5.368 23 H 0.270 0.730 24 H 0.133 0.867 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -16.067 5.000 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.529 4.529 8 H 0.096 0.904 9 C 0.000 4.000 10 C -0.341 4.341 11 C -0.108 4.108 12 C -0.037 4.037 13 C -0.074 4.074 14 C -0.129 4.129 15 C -0.135 4.135 16 C -0.078 4.078 17 Cl -0.046 7.046 18 C -0.134 4.134 19 C -0.122 4.122 20 N -0.141 5.141 21 H 0.272 0.728 22 N -0.201 5.201 23 H 0.079 0.921 24 H 0.151 0.849 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.162 0.838 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.220 -15.418 5.147 16.255 hybrid contribution 0.597 0.337 0.238 0.726 sum 0.817 -15.080 5.385 16.034 Atomic orbital electron populations 1.70098 1.08491 1.28179 1.38837 1.26656 0.95625 1.03906 0.92897 0.85234 0.78835 0.76683 0.78984 1.19116 1.20082 1.18227 1.18926 0.93725 0.89609 1.50617 0.90400 1.19736 0.88933 0.94023 0.97338 1.21541 0.98508 0.92750 1.21277 1.21307 0.87325 0.94345 1.07792 1.19093 1.05521 0.85944 0.93134 1.20028 0.93680 0.97118 0.96540 1.21243 0.99372 0.98641 0.93620 1.21221 0.96347 1.00100 0.95863 1.21072 0.95618 1.04275 0.86870 1.98351 1.98143 1.87622 1.20532 1.21242 0.98459 0.99590 0.94142 1.21259 0.97969 0.98019 0.94990 1.43573 1.07755 1.04043 1.58686 0.72818 1.74580 1.17163 0.96485 1.31864 0.92066 0.84909 0.87495 0.88009 0.83764 0.83651 0.83639 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.10 11.97 21.81 0.26 -48.84 16 2 C 0.02 1.27 5.49 85.22 0.47 1.74 16 3 Si 0.98 42.44 29.56 68.60 2.03 44.46 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.49 -28.86 9.42 23.45 0.22 -28.64 16 8 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 9 C 0.15 8.66 6.78 40.78 0.28 8.93 16 10 C -0.31 -14.72 10.89 22.53 0.25 -14.47 16 11 C 0.02 0.80 6.47 41.20 0.27 1.07 16 12 C 0.00 0.04 5.90 29.10 0.17 0.22 16 13 C -0.07 -1.85 5.12 -19.86 -0.10 -1.95 16 14 C -0.11 -2.60 9.70 22.27 0.22 -2.38 16 15 C -0.12 -2.67 9.83 22.29 0.22 -2.46 16 16 C -0.05 -1.24 6.32 22.33 0.14 -1.10 16 17 Cl -0.08 -1.64 28.96 -2.72 -0.08 -1.72 16 18 C -0.12 -2.72 9.83 22.29 0.22 -2.50 16 19 C -0.10 -2.56 9.70 22.26 0.22 -2.34 16 20 N -0.43 -18.88 6.86 -47.63 -0.33 -19.21 16 21 H 0.43 15.15 8.96 -219.98 -1.97 13.18 16 22 N -0.37 -20.75 10.50 -51.60 -0.54 -21.29 16 23 H 0.27 14.75 8.30 -92.70 -0.77 13.98 16 24 H 0.13 5.71 8.06 -2.91 -0.02 5.68 16 25 H 0.11 2.40 8.08 -2.39 -0.02 2.38 16 26 H 0.10 2.07 8.09 -2.38 -0.02 2.05 16 27 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 28 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -71.71 286.18 3.10 -68.61 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.80 Total: 21.86 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 2.56 Total: -43.88 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -0.61 Total: -89.34 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -71.71 3.10 -68.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721339.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.385 kcal (2) G-P(sol) polarization free energy of solvation -71.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds