Wall clock time and date at job start Mon Mar 30 2020 06:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 N 1.46900 * 109.46946 * 299.99661 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.36613 * 120.92273 * 99.71746 * 12 9 7 14 14 C 1.39289 * 119.93503 * 179.82897 * 13 12 9 15 15 N 1.31109 * 121.74960 * 0.43254 * 14 13 12 16 16 C 1.33658 * 121.32666 * 359.79923 * 15 14 13 17 17 C 1.40607 * 121.07076 * 179.97438 * 16 15 14 18 18 C 1.36052 * 119.76727 * 180.02562 * 17 16 15 19 19 C 1.39475 * 121.05689 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 119.57748 * 179.97438 * 19 18 17 21 21 C 1.36242 * 120.84250 * 0.02562 * 19 18 17 22 22 C 1.40413 * 119.60702 * 359.97438 * 21 19 18 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.00907 * 110.99867 * 176.04554 * 11 9 7 25 25 H 1.00896 * 111.00376 * 299.99893 * 11 9 7 26 26 H 1.08000 * 120.03156 * 0.02562 * 13 12 9 27 27 H 1.07997 * 119.12749 * 180.21106 * 14 13 12 28 28 H 1.08003 * 120.11836 * 0.03202 * 17 16 15 29 29 H 1.07998 * 119.47194 * 179.97438 * 18 17 16 30 30 H 1.08003 * 120.19180 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2304 -3.6445 0.0005 13 6 2.5363 -4.3067 1.1557 14 6 3.4417 -5.3649 1.1314 15 7 4.0258 -5.7478 0.0218 16 6 3.7743 -5.1397 -1.1415 17 6 4.4042 -5.5545 -2.3283 18 6 4.1289 -4.9161 -3.4978 19 6 3.2290 -3.8515 -3.5419 20 17 2.9068 -3.0640 -5.0551 21 6 2.6004 -3.4209 -2.4125 22 6 2.8610 -4.0571 -1.1881 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.1578 -3.4134 1.1912 25 1 0.9638 -2.5251 2.0390 26 1 2.0741 -4.0120 2.0862 27 1 3.6714 -5.8814 2.0516 28 1 5.1039 -6.3770 -2.3115 29 1 4.6158 -5.2384 -4.4063 30 1 1.9051 -2.5958 -2.4588 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259744854.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:58 Heat of formation + Delta-G solvation = 41.054364 kcal Electronic energy + Delta-G solvation = -16971.581856 eV Core-core repulsion = 14178.043022 eV Total energy + Delta-G solvation = -2793.538834 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.63057 -37.34290 -36.01981 -35.62423 -32.54339 -31.14839 -30.12489 -29.23408 -26.14505 -23.99398 -23.27276 -22.53333 -20.29276 -17.93781 -17.19888 -16.99835 -16.31611 -15.02087 -14.52422 -14.28652 -14.11534 -13.78102 -13.72577 -13.46052 -13.11179 -12.62449 -12.28118 -11.90498 -11.67418 -11.27454 -10.84229 -10.75192 -10.70001 -10.56136 -10.16948 -10.02008 -9.20653 -8.81906 -8.46947 -8.46096 -7.82219 -7.74185 -6.33113 -4.19320 0.66525 1.00464 2.30856 2.33151 3.05709 3.41670 3.44371 3.59888 4.34999 4.49556 4.51951 4.88303 4.97507 5.18224 5.26199 5.33066 5.37405 5.44028 5.73216 5.92854 5.97075 6.13511 6.19674 6.27199 6.40501 6.57546 6.77872 6.98148 7.03488 7.73357 8.08225 8.16493 8.45368 8.54243 8.88226 9.64319 11.06779 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.008720 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.743314 B = 3210.063056 C = 4474.596631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.043 3.957 3 Si 1.065 2.935 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.610 4.610 8 H 0.048 0.952 9 C 0.234 3.766 10 H 0.048 0.952 11 N -0.828 5.828 12 C 0.007 3.993 13 C -0.208 4.208 14 C 0.143 3.857 15 N -0.500 5.500 16 C 0.129 3.871 17 C -0.095 4.095 18 C -0.093 4.093 19 C -0.055 4.055 20 Cl -0.076 7.076 21 C -0.047 4.047 22 C -0.094 4.094 23 H 0.290 0.710 24 H 0.305 0.695 25 H 0.330 0.670 26 H 0.132 0.868 27 H 0.153 0.847 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 -9.471 -3.559 11.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.167 4.167 3 Si 0.893 3.107 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.649 4.649 8 H 0.066 0.934 9 C 0.125 3.875 10 H 0.066 0.934 11 N -0.356 5.356 12 C -0.003 4.003 13 C -0.229 4.229 14 C -0.028 4.028 15 N -0.209 5.209 16 C 0.007 3.993 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.082 4.082 20 Cl -0.047 7.047 21 C -0.066 4.066 22 C -0.097 4.097 23 H 0.103 0.897 24 H 0.116 0.884 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.170 0.830 28 H 0.155 0.845 29 H 0.151 0.849 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.597 -7.776 -4.056 10.405 hybrid contribution 0.267 -1.769 0.266 1.809 sum 5.864 -9.546 -3.790 11.827 Atomic orbital electron populations 1.70545 1.06801 1.32868 1.41459 1.25625 0.96510 1.01776 0.92836 0.83619 0.74828 0.75430 0.76808 1.21463 1.21550 1.20911 1.21569 0.93391 0.89685 1.60210 0.93390 1.18511 0.88014 0.90153 0.90821 0.93423 1.59398 1.28350 1.42579 1.05284 1.21990 0.93862 0.93491 0.90956 1.21644 1.02602 0.99135 0.99471 1.22833 0.90966 0.93008 0.95969 1.68002 1.25162 1.29596 0.98158 1.18948 0.94768 0.92791 0.92747 1.20592 1.00275 1.00562 0.89987 1.20663 0.97249 0.94744 0.98717 1.20539 1.02091 0.98056 0.87476 1.98351 1.94863 1.80051 1.31466 1.21206 0.97729 0.98104 0.89580 1.18645 0.99300 0.97297 0.94489 0.89682 0.88378 0.85627 0.85068 0.82996 0.84467 0.84859 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.25 13.50 55.43 0.75 -24.50 16 2 C 0.04 1.17 5.39 -17.82 -0.10 1.08 16 3 Si 1.06 24.49 29.90 -169.99 -5.08 19.40 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.61 -15.86 8.46 -34.44 -0.29 -16.15 16 8 H 0.05 1.30 7.74 -52.49 -0.41 0.90 16 9 C 0.23 5.31 1.83 -70.01 -0.13 5.18 16 10 H 0.05 1.17 6.94 -51.93 -0.36 0.81 16 11 N -0.83 -17.34 7.30 -6.65 -0.05 -17.39 16 12 C 0.01 0.15 5.05 -104.26 -0.53 -0.38 16 13 C -0.21 -3.61 9.27 -39.78 -0.37 -3.98 16 14 C 0.14 2.27 11.14 -17.47 -0.19 2.08 16 15 N -0.50 -8.74 10.34 -10.97 -0.11 -8.86 16 16 C 0.13 2.33 6.60 -84.85 -0.56 1.77 16 17 C -0.10 -1.44 9.98 -39.47 -0.39 -1.83 16 18 C -0.09 -1.33 9.71 -39.91 -0.39 -1.72 16 19 C -0.06 -0.90 6.28 -39.84 -0.25 -1.15 16 20 Cl -0.08 -1.14 28.92 -51.86 -1.50 -2.64 16 21 C -0.05 -0.89 8.97 -39.48 -0.35 -1.24 16 22 C -0.09 -1.84 5.74 -106.81 -0.61 -2.45 16 23 H 0.29 8.25 6.39 -40.82 -0.26 7.99 16 24 H 0.31 5.57 9.06 -39.29 -0.36 5.22 16 25 H 0.33 6.61 7.35 -39.29 -0.29 6.32 16 26 H 0.13 2.04 6.33 -52.49 -0.33 1.71 16 27 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.14 1.74 8.06 -52.48 -0.42 1.31 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.15 3.12 6.56 -52.48 -0.34 2.77 16 LS Contribution 274.27 15.07 4.13 4.13 Total: -1.00 -28.95 274.27 -8.44 -37.39 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -2.41 Total: 11.25 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -4.16 Total: -18.80 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.59 Total: -50.75 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.40 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.95 -8.44 -37.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744854.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.448 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds