Wall clock time and date at job start Mon Mar 30 2020 06:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 N 1.46900 * 109.46946 * 299.99661 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.36613 * 120.92273 * 99.71746 * 12 9 7 14 14 C 1.39289 * 119.93503 * 179.82897 * 13 12 9 15 15 N 1.31109 * 121.74960 * 0.43254 * 14 13 12 16 16 C 1.33658 * 121.32666 * 359.79923 * 15 14 13 17 17 C 1.40607 * 121.07076 * 179.97438 * 16 15 14 18 18 C 1.36052 * 119.76727 * 180.02562 * 17 16 15 19 19 C 1.39475 * 121.05689 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 119.57748 * 179.97438 * 19 18 17 21 21 C 1.36242 * 120.84250 * 0.02562 * 19 18 17 22 22 C 1.40413 * 119.60702 * 359.97438 * 21 19 18 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.00907 * 110.99867 * 176.04554 * 11 9 7 25 25 H 1.00896 * 111.00376 * 299.99893 * 11 9 7 26 26 H 1.08000 * 120.03156 * 0.02562 * 13 12 9 27 27 H 1.07997 * 119.12749 * 180.21106 * 14 13 12 28 28 H 1.08003 * 120.11836 * 0.03202 * 17 16 15 29 29 H 1.07998 * 119.47194 * 179.97438 * 18 17 16 30 30 H 1.08003 * 120.19180 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2304 -3.6445 0.0005 13 6 2.5363 -4.3067 1.1557 14 6 3.4417 -5.3649 1.1314 15 7 4.0258 -5.7478 0.0218 16 6 3.7743 -5.1397 -1.1415 17 6 4.4042 -5.5545 -2.3283 18 6 4.1289 -4.9161 -3.4978 19 6 3.2290 -3.8515 -3.5419 20 17 2.9068 -3.0640 -5.0551 21 6 2.6004 -3.4209 -2.4125 22 6 2.8610 -4.0571 -1.1881 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.1578 -3.4134 1.1912 25 1 0.9638 -2.5251 2.0390 26 1 2.0741 -4.0120 2.0862 27 1 3.6714 -5.8814 2.0516 28 1 5.1039 -6.3770 -2.3115 29 1 4.6158 -5.2384 -4.4063 30 1 1.9051 -2.5958 -2.4588 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259744854.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:58 Heat of formation + Delta-G solvation = 22.832735 kcal Electronic energy + Delta-G solvation = -16972.372005 eV Core-core repulsion = 14178.043022 eV Total energy + Delta-G solvation = -2794.328983 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.97655 -38.65490 -37.55881 -36.99532 -34.29145 -32.77451 -31.44847 -30.63321 -27.98129 -25.52428 -24.64108 -24.08955 -21.83390 -19.32847 -18.84148 -18.53391 -17.73096 -16.63316 -15.93649 -15.80549 -15.51341 -15.46386 -15.11707 -14.92517 -14.61162 -13.91853 -13.82815 -13.65333 -13.05902 -12.69111 -12.66123 -12.34635 -12.00113 -11.96772 -11.94672 -11.58861 -10.68101 -10.58314 -10.50150 -9.76025 -9.47483 -9.18408 -8.43241 -6.30789 -0.67795 -0.30296 0.92742 1.03870 1.53593 1.60331 1.77463 1.78648 2.58181 3.02775 3.25371 3.29148 3.56578 3.71991 3.86796 3.92846 4.04542 4.12828 4.22902 4.52164 4.64980 4.82106 4.83848 4.96723 5.01506 5.11870 5.36336 5.49611 5.71885 5.84003 6.14037 6.57708 6.72471 6.83415 6.95779 7.58480 8.93712 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.008720 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.743314 B = 3210.063056 C = 4474.596631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.002 4.002 3 Si 1.104 2.896 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.608 4.608 8 H 0.030 0.970 9 C 0.244 3.756 10 H 0.018 0.982 11 N -0.834 5.834 12 C -0.026 4.026 13 C -0.200 4.200 14 C 0.146 3.854 15 N -0.501 5.501 16 C 0.110 3.890 17 C -0.086 4.086 18 C -0.086 4.086 19 C -0.046 4.046 20 Cl -0.065 7.065 21 C -0.079 4.079 22 C -0.112 4.112 23 H 0.281 0.719 24 H 0.322 0.678 25 H 0.336 0.664 26 H 0.147 0.853 27 H 0.197 0.803 28 H 0.170 0.830 29 H 0.173 0.827 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.480 -11.031 -3.482 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.207 4.207 3 Si 0.928 3.072 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.647 4.647 8 H 0.049 0.951 9 C 0.134 3.866 10 H 0.035 0.965 11 N -0.364 5.364 12 C -0.036 4.036 13 C -0.220 4.220 14 C -0.026 4.026 15 N -0.210 5.210 16 C -0.011 4.011 17 C -0.105 4.105 18 C -0.106 4.106 19 C -0.073 4.073 20 Cl -0.036 7.036 21 C -0.099 4.099 22 C -0.115 4.115 23 H 0.092 0.908 24 H 0.134 0.866 25 H 0.150 0.850 26 H 0.164 0.836 27 H 0.214 0.786 28 H 0.187 0.813 29 H 0.190 0.810 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.501 -9.351 -3.982 12.632 hybrid contribution -0.287 -1.395 0.189 1.437 sum 7.214 -10.746 -3.793 13.487 Atomic orbital electron populations 1.70646 1.07570 1.32301 1.44211 1.26771 0.96630 1.04930 0.92324 0.83091 0.74115 0.72516 0.77468 1.20134 1.20670 1.20940 1.21732 0.92643 0.91486 1.58819 0.95116 1.18052 0.88134 0.90254 0.90149 0.96486 1.59142 1.28517 1.43850 1.04860 1.21745 0.94974 0.94166 0.92745 1.21895 1.02251 0.98843 0.98971 1.23465 0.89701 0.92301 0.97105 1.68099 1.25123 1.29366 0.98369 1.19326 0.94975 0.92626 0.94171 1.20982 0.99731 1.00825 0.88948 1.21033 0.96134 0.93286 1.00112 1.20743 1.01369 0.98079 0.87093 1.98355 1.94825 1.80014 1.30434 1.20992 0.99201 0.98725 0.90973 1.18796 1.00102 0.98281 0.94357 0.90768 0.86596 0.84970 0.83559 0.78612 0.81299 0.80979 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.66 13.50 21.45 0.29 -53.37 16 2 C 0.00 -0.08 5.39 84.65 0.46 0.37 16 3 Si 1.10 50.01 29.90 68.60 2.05 52.06 16 4 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 7 C -0.61 -32.64 8.46 25.60 0.22 -32.42 16 8 H 0.03 1.71 7.74 -2.91 -0.02 1.69 16 9 C 0.24 11.50 1.83 43.42 0.08 11.58 16 10 H 0.02 0.91 6.94 -2.39 -0.02 0.90 16 11 N -0.83 -35.62 7.30 -174.95 -1.28 -36.90 16 12 C -0.03 -1.06 5.05 -19.63 -0.10 -1.16 16 13 C -0.20 -6.68 9.27 22.14 0.21 -6.47 16 14 C 0.15 4.22 11.14 85.05 0.95 5.16 16 15 N -0.50 -16.20 10.34 -188.63 -1.95 -18.15 16 16 C 0.11 3.79 6.60 40.30 0.27 4.06 16 17 C -0.09 -2.35 9.98 22.34 0.22 -2.13 16 18 C -0.09 -2.20 9.71 22.06 0.21 -1.99 16 19 C -0.05 -1.48 6.28 22.10 0.14 -1.34 16 20 Cl -0.07 -1.90 28.92 -2.72 -0.08 -1.98 16 21 C -0.08 -3.09 8.97 22.33 0.20 -2.89 16 22 C -0.11 -4.43 5.74 -21.28 -0.12 -4.55 16 23 H 0.28 16.58 6.39 -92.70 -0.59 15.98 16 24 H 0.32 11.90 9.06 -89.69 -0.81 11.09 16 25 H 0.34 13.48 7.35 -89.70 -0.66 12.82 16 26 H 0.15 4.32 6.33 -2.91 -0.02 4.30 16 27 H 0.20 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.12 5.39 6.56 -2.91 -0.02 5.37 16 Total: -1.00 -64.00 274.27 1.67 -62.33 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -0.09 Total: 27.77 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 2.73 Total: -31.77 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -2.94 Total: -108.42 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.06 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -64.00 1.67 -62.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744854.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.167 kcal (2) G-P(sol) polarization free energy of solvation -64.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds