Wall clock time and date at job start Mon Mar 30 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31450 * 1 3 3 Si 1.86795 * 119.99771 * 2 1 4 4 H 1.48501 * 109.47309 * 268.55580 * 3 2 1 5 5 H 1.48500 * 109.47048 * 28.55401 * 3 2 1 6 6 H 1.48502 * 109.47224 * 148.55294 * 3 2 1 7 7 C 1.38781 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00338 * 344.15390 * 7 2 1 9 9 N 1.37407 * 119.99652 * 164.15940 * 7 2 1 10 10 C 1.37321 * 126.37756 * 338.17043 * 9 7 2 11 11 C 1.35854 * 106.92163 * 180.13811 * 10 9 7 12 12 C 1.48219 * 125.97274 * 179.90373 * 11 10 9 13 13 C 1.39481 * 120.07251 * 359.43495 * 12 11 10 14 14 C 1.37886 * 119.92364 * 179.76354 * 13 12 11 15 15 C 1.38847 * 120.07573 * 0.53899 * 14 13 12 16 16 O 1.35881 * 119.92599 * 179.71986 * 15 14 13 17 17 C 1.38853 * 120.15067 * 359.69004 * 15 14 13 18 18 C 1.37888 * 120.07387 * 0.04910 * 17 15 14 19 19 N 1.35703 * 108.05899 * 359.63629 * 11 10 9 20 20 C 1.31177 * 109.15952 * 0.22863 * 19 11 10 21 21 S 1.76200 * 125.69109 * 179.97438 * 20 19 11 22 22 H 0.97000 * 120.00339 * 0.02562 * 1 2 3 23 23 H 1.07998 * 126.54122 * 0.02562 * 10 9 7 24 24 H 1.08007 * 120.03567 * 0.02562 * 13 12 11 25 25 H 1.08001 * 119.95992 * 180.22680 * 14 13 12 26 26 H 0.96696 * 113.99894 * 269.97315 * 16 15 14 27 27 H 1.07994 * 119.96499 * 180.02562 * 17 15 14 28 28 H 1.08004 * 120.03963 * 179.97438 * 18 17 15 29 29 H 1.41001 * 100.00100 * 84.69705 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.5265 2.0288 -1.3996 5 1 1.4308 2.6613 0.6692 6 1 3.5303 1.4493 0.7304 7 6 2.0084 -1.2019 -0.0005 8 1 1.4991 -2.1196 0.2544 9 7 3.3433 -1.2243 -0.3254 10 6 4.0205 -0.2769 -1.0531 11 6 5.3110 -0.6926 -1.1395 12 6 6.4092 0.0168 -1.8378 13 6 6.1569 1.2210 -2.4949 14 6 7.1819 1.8807 -3.1394 15 6 8.4616 1.3421 -3.1443 16 8 9.4682 1.9920 -3.7852 17 6 8.7153 0.1411 -2.4951 18 6 7.6960 -0.5212 -1.8441 19 7 5.4202 -1.8677 -0.4697 20 6 4.2482 -2.1941 0.0209 21 16 3.8958 -3.6385 0.9666 22 1 -0.4850 0.8400 -0.0004 23 1 3.6058 0.6255 -1.4774 24 1 5.1607 1.6382 -2.4953 25 1 6.9880 2.8150 -3.6453 26 1 9.5716 1.7393 -4.7128 27 1 9.7119 -0.2749 -2.5005 28 1 7.8939 -1.4555 -1.3398 29 1 4.2642 -3.1865 2.2504 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259838180.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:03 Heat of formation + Delta-G solvation = 39.888769 kcal Electronic energy + Delta-G solvation = -16564.969234 eV Core-core repulsion = 13773.423562 eV Total energy + Delta-G solvation = -2791.545672 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.89518 -39.23509 -36.50703 -34.25392 -31.99426 -30.85841 -30.24952 -27.53831 -25.37198 -22.77637 -22.56219 -20.84166 -19.81174 -18.47286 -18.18037 -16.80298 -16.11177 -15.45941 -15.16952 -15.09150 -14.56728 -13.96745 -13.85122 -13.29049 -13.18940 -13.02944 -12.63927 -12.19495 -11.73473 -11.56825 -11.29920 -11.15537 -10.66033 -10.29647 -10.24792 -9.96915 -9.23742 -9.07093 -8.73688 -8.46115 -7.60081 -7.19896 -7.16018 -4.82451 1.33846 1.65383 2.05712 2.57757 2.77838 2.90248 2.99832 3.20080 3.61364 3.64698 4.22698 4.30871 4.50419 4.56023 5.13743 5.18733 5.30042 5.67881 5.73622 5.88123 6.06938 6.18900 6.39956 6.47162 6.66396 6.66764 7.02577 7.06954 7.20939 7.46571 7.77055 7.79531 8.27867 8.65492 8.86383 9.85429 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.006852 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.152044 B = 4085.196558 C = 5311.991049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.076 3.924 3 Si 0.893 3.107 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.248 1.248 7 C -0.334 4.334 8 H 0.142 0.858 9 N -0.231 5.231 10 C -0.099 4.099 11 C 0.002 3.998 12 C 0.029 3.971 13 C -0.110 4.110 14 C -0.138 4.138 15 C 0.076 3.924 16 O -0.503 6.503 17 C -0.141 4.141 18 C -0.092 4.092 19 N -0.451 5.451 20 C 0.097 3.903 21 S -0.037 6.037 22 H 0.292 0.708 23 H 0.162 0.838 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.383 0.617 27 H 0.124 0.876 28 H 0.134 0.866 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.784 2.450 -4.243 10.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.172 1.172 7 C -0.465 4.465 8 H 0.159 0.841 9 N 0.105 4.895 10 C -0.245 4.245 11 C -0.136 4.136 12 C 0.028 3.972 13 C -0.130 4.130 14 C -0.157 4.157 15 C 0.032 3.968 16 O -0.312 6.312 17 C -0.159 4.159 18 C -0.111 4.111 19 N -0.172 5.172 20 C -0.265 4.265 21 S 0.116 5.884 22 H 0.103 0.897 23 H 0.179 0.821 24 H 0.141 0.859 25 H 0.142 0.858 26 H 0.237 0.763 27 H 0.142 0.858 28 H 0.152 0.848 29 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.866 1.340 -3.150 9.504 hybrid contribution -0.270 2.384 -0.275 2.415 sum 8.596 3.724 -3.425 9.974 Atomic orbital electron populations 1.69686 1.06408 1.30328 1.37198 1.25423 0.95616 0.99835 0.93159 0.86619 0.80755 0.80991 0.79750 1.18827 1.20547 1.17163 1.19857 0.80525 0.98898 1.47181 0.84098 1.42267 1.07942 1.12743 1.26592 1.22398 0.93990 0.99857 1.08293 1.18770 0.91565 0.95607 1.07669 1.17983 0.91613 0.92820 0.94815 1.20998 0.99003 0.94826 0.98151 1.21183 0.91920 1.00614 1.01964 1.18434 0.87045 0.92425 0.98918 1.84819 1.52200 1.66118 1.28050 1.21287 0.99561 0.94670 1.00406 1.21120 0.91320 1.00116 0.98564 1.70774 1.21508 1.12314 1.12616 1.23530 0.87072 1.00595 1.15320 1.86092 1.86339 1.11060 1.04933 0.89678 0.82120 0.85897 0.85774 0.76278 0.85818 0.84820 0.95957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.13 13.96 55.49 0.77 -19.36 15 2 C 0.08 1.87 5.47 -17.51 -0.10 1.77 15 3 Si 0.89 19.11 24.68 -169.99 -4.19 14.92 15 4 H -0.26 -5.24 6.49 56.52 0.37 -4.88 15 5 H -0.28 -5.77 7.11 56.52 0.40 -5.36 15 6 H -0.25 -5.59 6.80 56.52 0.38 -5.20 15 7 C -0.33 -8.44 10.24 -14.85 -0.15 -8.60 15 8 H 0.14 3.67 7.89 -52.49 -0.41 3.26 15 9 N -0.23 -5.69 2.78 -61.61 -0.17 -5.86 15 10 C -0.10 -2.30 7.99 -15.95 -0.13 -2.43 15 11 C 0.00 0.04 6.87 -82.91 -0.57 -0.53 15 12 C 0.03 0.56 5.88 -104.87 -0.62 -0.06 15 13 C -0.11 -1.87 9.55 -39.25 -0.37 -2.24 15 14 C -0.14 -2.03 9.97 -39.49 -0.39 -2.43 15 15 C 0.08 1.10 6.71 -39.13 -0.26 0.83 15 16 O -0.50 -6.16 13.50 -19.37 -0.26 -6.42 15 17 C -0.14 -2.07 9.97 -39.48 -0.39 -2.47 15 18 C -0.09 -1.58 9.69 -39.25 -0.38 -1.96 15 19 N -0.45 -10.60 10.99 -9.61 -0.11 -10.71 15 20 C 0.10 2.30 8.20 -87.91 -0.72 1.58 15 21 S -0.04 -0.73 25.72 -107.50 -2.77 -3.49 15 22 H 0.29 6.61 8.31 -40.82 -0.34 6.27 15 23 H 0.16 3.52 3.50 -52.49 -0.18 3.34 15 24 H 0.12 2.00 6.99 -52.48 -0.37 1.63 15 25 H 0.12 1.54 8.06 -52.49 -0.42 1.11 15 26 H 0.38 2.75 9.06 45.56 0.41 3.16 15 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.13 2.30 7.85 -52.48 -0.41 1.88 15 29 H 0.08 1.38 9.55 96.90 0.93 2.30 15 LS Contribution 271.82 15.07 4.10 4.10 Total: -1.00 -27.95 271.82 -6.79 -34.73 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -0.07 Total: 8.62 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -4.09 Total: -16.53 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.50 Total: -35.93 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.26 Total: -6.42 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.19 Total: 14.92 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.77 Total: -3.49 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.95 -6.79 -34.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259838180.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.620 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds