Wall clock time and date at job start Mon Mar 30 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31450 * 1 3 3 Si 1.86795 * 119.99771 * 2 1 4 4 H 1.48501 * 109.47309 * 268.55580 * 3 2 1 5 5 H 1.48500 * 109.47048 * 28.55401 * 3 2 1 6 6 H 1.48502 * 109.47224 * 148.55294 * 3 2 1 7 7 C 1.38781 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00338 * 344.15390 * 7 2 1 9 9 N 1.37407 * 119.99652 * 164.15940 * 7 2 1 10 10 C 1.37321 * 126.37756 * 338.17043 * 9 7 2 11 11 C 1.35854 * 106.92163 * 180.13811 * 10 9 7 12 12 C 1.48219 * 125.97274 * 179.90373 * 11 10 9 13 13 C 1.39481 * 120.07251 * 359.43495 * 12 11 10 14 14 C 1.37886 * 119.92364 * 179.76354 * 13 12 11 15 15 C 1.38847 * 120.07573 * 0.53899 * 14 13 12 16 16 O 1.35881 * 119.92599 * 179.71986 * 15 14 13 17 17 C 1.38853 * 120.15067 * 359.69004 * 15 14 13 18 18 C 1.37888 * 120.07387 * 0.04910 * 17 15 14 19 19 N 1.35703 * 108.05899 * 359.63629 * 11 10 9 20 20 C 1.31177 * 109.15952 * 0.22863 * 19 11 10 21 21 S 1.76200 * 125.69109 * 179.97438 * 20 19 11 22 22 H 0.97000 * 120.00339 * 0.02562 * 1 2 3 23 23 H 1.07998 * 126.54122 * 0.02562 * 10 9 7 24 24 H 1.08007 * 120.03567 * 0.02562 * 13 12 11 25 25 H 1.08001 * 119.95992 * 180.22680 * 14 13 12 26 26 H 0.96696 * 113.99894 * 269.97315 * 16 15 14 27 27 H 1.07994 * 119.96499 * 180.02562 * 17 15 14 28 28 H 1.08004 * 120.03963 * 179.97438 * 18 17 15 29 29 H 1.41001 * 100.00100 * 84.69705 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.5265 2.0288 -1.3996 5 1 1.4308 2.6613 0.6692 6 1 3.5303 1.4493 0.7304 7 6 2.0084 -1.2019 -0.0005 8 1 1.4991 -2.1196 0.2544 9 7 3.3433 -1.2243 -0.3254 10 6 4.0205 -0.2769 -1.0531 11 6 5.3110 -0.6926 -1.1395 12 6 6.4092 0.0168 -1.8378 13 6 6.1569 1.2210 -2.4949 14 6 7.1819 1.8807 -3.1394 15 6 8.4616 1.3421 -3.1443 16 8 9.4682 1.9920 -3.7852 17 6 8.7153 0.1411 -2.4951 18 6 7.6960 -0.5212 -1.8441 19 7 5.4202 -1.8677 -0.4697 20 6 4.2482 -2.1941 0.0209 21 16 3.8958 -3.6385 0.9666 22 1 -0.4850 0.8400 -0.0004 23 1 3.6058 0.6255 -1.4774 24 1 5.1607 1.6382 -2.4953 25 1 6.9880 2.8150 -3.6453 26 1 9.5716 1.7393 -4.7128 27 1 9.7119 -0.2749 -2.5005 28 1 7.8939 -1.4555 -1.3398 29 1 4.2642 -3.1865 2.2504 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259838180.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:03 Heat of formation + Delta-G solvation = 21.692000 kcal Electronic energy + Delta-G solvation = -16565.758305 eV Core-core repulsion = 13773.423562 eV Total energy + Delta-G solvation = -2792.334743 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.64043 -40.41353 -37.64983 -36.03842 -33.76233 -32.15941 -31.65654 -29.09808 -27.16977 -24.18502 -23.89583 -22.46382 -21.34978 -20.26233 -19.27739 -18.50567 -17.69551 -16.92846 -16.53004 -16.30179 -16.16740 -15.69998 -15.39731 -14.80693 -14.64882 -14.42200 -14.26475 -13.55184 -13.19004 -13.00848 -12.86005 -12.70469 -12.27954 -12.02921 -11.65116 -11.37687 -10.98991 -10.79048 -10.00329 -9.94127 -9.19460 -9.00583 -8.75132 -6.72602 0.05119 0.41713 0.44124 0.83947 1.08078 1.19435 1.30550 1.61295 1.88077 2.11681 2.46463 2.70622 2.97115 3.36183 3.74129 3.92258 4.08426 4.13007 4.35735 4.47114 4.76104 4.78247 4.95280 5.12827 5.23754 5.43493 5.46798 5.65630 5.76077 5.87359 5.94978 6.43923 6.82430 6.93182 7.08374 8.06336 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.006852 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.152044 B = 4085.196558 C = 5311.991049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.047 3.953 3 Si 0.938 3.062 4 H -0.238 1.238 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.356 4.356 8 H 0.121 0.879 9 N -0.247 5.247 10 C -0.114 4.114 11 C 0.006 3.994 12 C -0.011 4.011 13 C -0.112 4.112 14 C -0.137 4.137 15 C 0.096 3.904 16 O -0.504 6.504 17 C -0.139 4.139 18 C -0.095 4.095 19 N -0.467 5.467 20 C 0.077 3.923 21 S -0.022 6.022 22 H 0.301 0.699 23 H 0.173 0.827 24 H 0.125 0.875 25 H 0.152 0.848 26 H 0.410 0.590 27 H 0.150 0.850 28 H 0.125 0.875 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.864 4.186 -5.452 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.166 4.166 3 Si 0.762 3.238 4 H -0.163 1.163 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.486 4.486 8 H 0.138 0.862 9 N 0.087 4.913 10 C -0.259 4.259 11 C -0.133 4.133 12 C -0.012 4.012 13 C -0.131 4.131 14 C -0.155 4.155 15 C 0.052 3.948 16 O -0.318 6.318 17 C -0.158 4.158 18 C -0.114 4.114 19 N -0.189 5.189 20 C -0.285 4.285 21 S 0.131 5.869 22 H 0.112 0.888 23 H 0.189 0.811 24 H 0.143 0.857 25 H 0.170 0.830 26 H 0.269 0.731 27 H 0.167 0.833 28 H 0.143 0.857 29 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.937 3.084 -4.400 12.185 hybrid contribution -0.685 1.835 0.015 1.959 sum 10.252 4.919 -4.385 12.187 Atomic orbital electron populations 1.69710 1.07297 1.31591 1.38220 1.25958 0.96132 1.01987 0.92563 0.85933 0.78849 0.78222 0.80837 1.16326 1.19053 1.19256 1.19704 0.81167 0.98779 1.48990 0.86190 1.42348 1.07809 1.13579 1.27540 1.22736 0.94403 1.00182 1.08550 1.19386 0.92348 0.95073 1.06451 1.18069 0.91556 0.94366 0.97239 1.21100 0.99947 0.94161 0.97895 1.21444 0.91453 1.01337 1.01299 1.18504 0.87230 0.91526 0.97588 1.84756 1.51114 1.65783 1.30113 1.21500 1.00005 0.94733 0.99516 1.21113 0.91331 1.00112 0.98890 1.70815 1.21480 1.13138 1.13468 1.24226 0.87208 1.01396 1.15688 1.85889 1.86361 1.09399 1.05296 0.88752 0.81083 0.85680 0.83002 0.73095 0.83272 0.85660 0.94237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.35 13.96 21.63 0.30 -42.05 15 2 C 0.05 2.36 5.47 84.88 0.46 2.82 15 3 Si 0.94 38.93 24.68 68.60 1.69 40.62 15 4 H -0.24 -8.89 6.49 99.48 0.65 -8.24 15 5 H -0.26 -10.28 7.11 99.48 0.71 -9.58 15 6 H -0.27 -11.92 6.80 99.48 0.68 -11.25 15 7 C -0.36 -18.57 10.24 83.95 0.86 -17.71 15 8 H 0.12 6.57 7.89 -2.91 -0.02 6.54 15 9 N -0.25 -12.43 2.78 -348.83 -0.97 -13.40 15 10 C -0.11 -5.34 7.99 83.28 0.66 -4.68 15 11 C 0.01 0.25 6.87 40.65 0.28 0.53 15 12 C -0.01 -0.41 5.88 -20.03 -0.12 -0.53 15 13 C -0.11 -3.55 9.55 22.49 0.21 -3.34 15 14 C -0.14 -3.53 9.97 22.33 0.22 -3.31 15 15 C 0.10 2.38 6.71 22.56 0.15 2.53 15 16 O -0.50 -9.87 13.50 -92.21 -1.24 -11.12 15 17 C -0.14 -3.66 9.97 22.33 0.22 -3.44 15 18 C -0.10 -3.14 9.69 22.49 0.22 -2.92 15 19 N -0.47 -22.21 10.99 -184.30 -2.03 -24.24 15 20 C 0.08 3.71 8.20 179.40 1.47 5.18 15 21 S -0.02 -0.86 25.72 -56.49 -1.45 -2.31 15 22 H 0.30 13.66 8.31 -92.71 -0.77 12.88 15 23 H 0.17 7.39 3.50 -2.91 -0.01 7.38 15 24 H 0.13 3.83 6.99 -2.91 -0.02 3.81 15 25 H 0.15 3.05 8.06 -2.91 -0.02 3.03 15 26 H 0.41 3.73 9.06 -74.06 -0.67 3.06 15 27 H 0.15 3.12 8.06 -2.91 -0.02 3.10 15 28 H 0.13 4.26 7.85 -2.91 -0.02 4.23 15 29 H 0.09 3.35 9.55 73.80 0.70 4.06 15 Total: -1.00 -60.44 271.82 2.12 -58.31 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 1.17 Total: 19.04 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 4.65 Total: -24.86 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -2.69 Total: -79.69 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.24 Total: -11.12 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.69 Total: 40.62 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -1.45 Total: -2.31 kcal Total: -60.44 2.12 -58.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259838180.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.006 kcal (2) G-P(sol) polarization free energy of solvation -60.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds