Wall clock time and date at job start Mon Mar 30 2020 06:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48502 * 109.47304 * 270.00010 * 3 2 1 5 5 H 1.48504 * 109.47049 * 30.00449 * 3 2 1 6 6 H 1.48497 * 109.47083 * 150.00162 * 3 2 1 7 7 C 1.37880 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99413 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00500 * 179.97438 * 7 2 1 10 10 C 1.50690 * 109.47339 * 179.97438 * 9 7 2 11 11 N 1.30584 * 125.50723 * 305.02366 * 10 9 7 12 12 C 1.33810 * 109.54511 * 179.70645 * 11 10 9 13 13 C 1.36066 * 107.88617 * 0.43656 * 12 11 10 14 14 C 1.47901 * 126.75711 * 179.83391 * 13 12 11 15 15 C 1.39541 * 120.14781 * 319.69304 * 14 13 12 16 16 C 1.37949 * 119.87103 * 180.02562 * 15 14 13 17 17 C 1.38385 * 120.16775 * 359.97438 * 16 15 14 18 18 C 1.38311 * 120.29395 * 359.97438 * 17 16 15 19 19 C 1.38105 * 120.13022 * 0.02562 * 18 17 16 20 20 Cl 1.73601 * 120.08237 * 179.97438 * 19 18 17 21 21 N 1.35084 * 125.50936 * 124.99785 * 10 9 7 22 22 H 0.97004 * 126.45259 * 0.02562 * 21 10 9 23 23 H 0.96995 * 120.00298 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46826 * 59.99717 * 9 7 2 25 25 H 1.09003 * 109.46727 * 300.00295 * 9 7 2 26 26 H 1.08000 * 126.05944 * 180.30889 * 12 11 10 27 27 H 1.07999 * 120.06601 * 0.03822 * 15 14 13 28 28 H 1.08003 * 119.91939 * 180.02562 * 16 15 14 29 29 H 1.07996 * 119.84865 * 179.72343 * 17 16 15 30 30 H 1.08003 * 119.93168 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0139 -2.6147 -0.0010 11 7 3.6919 -3.5330 0.8698 12 6 4.3148 -4.6773 0.5648 13 6 5.0698 -4.4589 -0.5459 14 6 5.9309 -5.4422 -1.2381 15 6 6.7038 -6.3393 -0.4998 16 6 7.5054 -7.2536 -1.1513 17 6 7.5442 -7.2834 -2.5342 18 6 6.7802 -6.3981 -3.2729 19 6 5.9734 -5.4776 -2.6333 20 17 5.0154 -4.3666 -3.5616 21 7 4.8698 -3.1444 -0.9020 22 1 5.2684 -2.6849 -1.6576 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6799 -0.8911 26 1 4.2344 -5.6086 1.1057 27 1 6.6743 -6.3179 0.5796 28 1 8.1036 -7.9485 -0.5806 29 1 8.1770 -7.9984 -3.0389 30 1 6.8146 -6.4268 -4.3520 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259840660.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:09 Heat of formation + Delta-G solvation = 67.021774 kcal Electronic energy + Delta-G solvation = -16310.812727 eV Core-core repulsion = 13518.399924 eV Total energy + Delta-G solvation = -2792.412803 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.47711 -39.14726 -36.53556 -33.41164 -32.37851 -31.79082 -30.88503 -30.12404 -26.85792 -23.35858 -23.06073 -22.20096 -20.63397 -19.60793 -17.76850 -16.84207 -16.48845 -15.53838 -15.30903 -14.52504 -14.15212 -14.00561 -13.66129 -13.63720 -13.35382 -12.84805 -12.22076 -11.92437 -11.83459 -11.67287 -11.63156 -10.91478 -10.73511 -10.53804 -10.11817 -9.61098 -9.43912 -9.28093 -9.15121 -8.95346 -8.59534 -7.44117 -6.06190 -4.05539 0.81849 1.02947 2.03915 2.57873 3.26237 3.34781 3.35405 3.42254 3.62862 3.85205 4.39326 4.61103 4.62219 4.80261 5.06448 5.17638 5.22002 5.34833 5.44212 5.68823 5.82666 5.97435 5.98150 6.10968 6.21229 6.57428 6.61398 6.75805 6.97090 7.26654 7.56328 7.92844 8.49693 8.80765 9.04051 9.50987 11.06848 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.034193 B = 0.004986 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.694883 B = 5614.732052 C = 6022.999147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.082 0.918 9 C 0.060 3.940 10 C 0.284 3.716 11 N -0.486 5.486 12 C 0.015 3.985 13 C -0.043 4.043 14 C 0.020 3.980 15 C -0.096 4.096 16 C -0.110 4.110 17 C -0.119 4.119 18 C -0.106 4.106 19 C -0.043 4.043 20 Cl -0.062 7.062 21 N -0.563 5.563 22 H 0.413 0.587 23 H 0.265 0.735 24 H 0.050 0.950 25 H 0.027 0.973 26 H 0.165 0.835 27 H 0.137 0.863 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.222 -12.762 -5.877 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.545 4.545 8 H 0.100 0.900 9 C 0.021 3.979 10 C 0.021 3.979 11 N -0.203 5.203 12 C -0.137 4.137 13 C -0.156 4.156 14 C 0.018 3.982 15 C -0.115 4.115 16 C -0.128 4.128 17 C -0.137 4.137 18 C -0.125 4.125 19 C -0.070 4.070 20 Cl -0.033 7.033 21 N -0.165 5.165 22 H 0.251 0.749 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.182 0.818 27 H 0.155 0.845 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.416 -12.425 -5.262 21.250 hybrid contribution 0.938 0.992 -1.273 1.867 sum 17.354 -11.433 -6.535 21.785 Atomic orbital electron populations 1.69881 1.06163 1.26936 1.50411 1.24933 0.94780 0.98733 0.94643 0.86880 0.80506 0.84026 0.78516 1.20226 1.20963 1.18925 1.20808 0.87333 0.95236 1.51109 0.90006 1.18335 0.98444 0.83145 0.97976 1.24053 0.89464 0.98314 0.86110 1.70291 1.24234 0.99103 1.26711 1.22410 0.97863 0.97991 0.95452 1.19157 1.08615 0.85710 1.02139 1.17880 0.95377 0.95080 0.89908 1.21198 0.95176 0.94745 1.00410 1.21168 0.98727 0.98417 0.94537 1.21127 0.99514 0.98973 0.94092 1.20962 0.96184 0.94796 1.00510 1.21161 0.98278 0.96183 0.91400 1.98395 1.70687 1.61330 1.72889 1.43536 1.37701 1.09589 1.25706 0.74897 0.92514 0.93242 0.95478 0.81813 0.84533 0.85174 0.85213 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 20.94 27.47 -169.99 -4.67 16.27 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.51 -14.55 9.61 -34.44 -0.33 -14.88 16 8 H 0.08 2.64 7.98 -52.49 -0.42 2.22 16 9 C 0.06 1.43 4.67 -29.04 -0.14 1.30 16 10 C 0.28 6.29 7.36 -155.31 -1.14 5.15 16 11 N -0.49 -11.07 11.17 -10.54 -0.12 -11.19 16 12 C 0.01 0.27 11.63 -17.47 -0.20 0.07 16 13 C -0.04 -0.72 6.23 -82.08 -0.51 -1.23 16 14 C 0.02 0.27 5.83 -104.94 -0.61 -0.34 16 15 C -0.10 -1.05 9.62 -39.20 -0.38 -1.43 16 16 C -0.11 -0.96 10.03 -39.63 -0.40 -1.35 16 17 C -0.12 -1.01 10.04 -39.50 -0.40 -1.40 16 18 C -0.11 -1.08 9.82 -39.60 -0.39 -1.47 16 19 C -0.04 -0.56 6.35 -39.11 -0.25 -0.81 16 20 Cl -0.06 -0.87 26.26 -51.86 -1.36 -2.23 16 21 N -0.56 -10.31 5.41 -6.87 -0.04 -10.35 16 22 H 0.41 6.69 7.68 -40.82 -0.31 6.37 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.05 1.18 7.20 -51.93 -0.37 0.80 16 25 H 0.03 0.60 7.57 -51.93 -0.39 0.20 16 26 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 27 H 0.14 1.30 8.04 -52.49 -0.42 0.88 16 28 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 29 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 30 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 280.68 15.07 4.23 4.23 Total: -1.00 -32.65 280.68 -8.80 -41.45 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -2.78 Total: 3.06 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -4.84 Total: -14.45 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.62 Total: -48.32 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.36 Total: -2.23 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.65 -8.80 -41.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259840660.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.472 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds