Wall clock time and date at job start Mon Mar 30 2020 06:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48502 * 109.47304 * 270.00010 * 3 2 1 5 5 H 1.48504 * 109.47049 * 30.00449 * 3 2 1 6 6 H 1.48497 * 109.47083 * 150.00162 * 3 2 1 7 7 C 1.37880 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99413 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00500 * 179.97438 * 7 2 1 10 10 C 1.50690 * 109.47339 * 179.97438 * 9 7 2 11 11 N 1.30584 * 125.50723 * 305.02366 * 10 9 7 12 12 C 1.33810 * 109.54511 * 179.70645 * 11 10 9 13 13 C 1.36066 * 107.88617 * 0.43656 * 12 11 10 14 14 C 1.47901 * 126.75711 * 179.83391 * 13 12 11 15 15 C 1.39541 * 120.14781 * 319.69304 * 14 13 12 16 16 C 1.37949 * 119.87103 * 180.02562 * 15 14 13 17 17 C 1.38385 * 120.16775 * 359.97438 * 16 15 14 18 18 C 1.38311 * 120.29395 * 359.97438 * 17 16 15 19 19 C 1.38105 * 120.13022 * 0.02562 * 18 17 16 20 20 Cl 1.73601 * 120.08237 * 179.97438 * 19 18 17 21 21 N 1.35084 * 125.50936 * 124.99785 * 10 9 7 22 22 H 0.97004 * 126.45259 * 0.02562 * 21 10 9 23 23 H 0.96995 * 120.00298 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46826 * 59.99717 * 9 7 2 25 25 H 1.09003 * 109.46727 * 300.00295 * 9 7 2 26 26 H 1.08000 * 126.05944 * 180.30889 * 12 11 10 27 27 H 1.07999 * 120.06601 * 0.03822 * 15 14 13 28 28 H 1.08003 * 119.91939 * 180.02562 * 16 15 14 29 29 H 1.07996 * 119.84865 * 179.72343 * 17 16 15 30 30 H 1.08003 * 119.93168 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0139 -2.6147 -0.0010 11 7 3.6919 -3.5330 0.8698 12 6 4.3148 -4.6773 0.5648 13 6 5.0698 -4.4589 -0.5459 14 6 5.9309 -5.4422 -1.2381 15 6 6.7038 -6.3393 -0.4998 16 6 7.5054 -7.2536 -1.1513 17 6 7.5442 -7.2834 -2.5342 18 6 6.7802 -6.3981 -3.2729 19 6 5.9734 -5.4776 -2.6333 20 17 5.0154 -4.3666 -3.5616 21 7 4.8698 -3.1444 -0.9020 22 1 5.2684 -2.6849 -1.6576 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6799 -0.8911 26 1 4.2344 -5.6086 1.1057 27 1 6.6743 -6.3179 0.5796 28 1 8.1036 -7.9485 -0.5806 29 1 8.1770 -7.9984 -3.0389 30 1 6.8146 -6.4268 -4.3520 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259840660.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:09 Heat of formation + Delta-G solvation = 46.526032 kcal Electronic energy + Delta-G solvation = -16311.701489 eV Core-core repulsion = 13518.399924 eV Total energy + Delta-G solvation = -2793.301565 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.94905 -40.02071 -37.53243 -35.39701 -33.77243 -33.29560 -31.90982 -31.57352 -28.36043 -25.07069 -24.08683 -23.33890 -22.01214 -21.10621 -19.02864 -18.90139 -17.56149 -16.53181 -16.39786 -16.34350 -15.65614 -15.10052 -14.94818 -14.65071 -14.58687 -14.47937 -13.99270 -13.67018 -12.86731 -12.66826 -12.56446 -12.48773 -12.36283 -11.93127 -11.85322 -11.63511 -11.05388 -10.87313 -10.78491 -10.25965 -9.81947 -8.81526 -8.27922 -6.34540 -0.11532 0.23363 1.07409 1.24529 1.37674 1.41477 1.52315 2.12881 2.23215 2.36247 2.71480 3.05458 3.55390 3.79474 3.87244 4.11483 4.28830 4.35693 4.40858 4.47059 4.62317 4.82830 4.91717 5.01921 5.16114 5.27372 5.42410 5.44491 5.48581 5.81282 5.84896 6.21154 6.48734 6.72308 7.26551 7.27425 8.89325 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.034193 B = 0.004986 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.694883 B = 5614.732052 C = 6022.999147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.241 1.241 7 C -0.517 4.517 8 H 0.025 0.975 9 C 0.067 3.933 10 C 0.245 3.755 11 N -0.525 5.525 12 C -0.017 4.017 13 C -0.009 4.009 14 C -0.017 4.017 15 C -0.094 4.094 16 C -0.102 4.102 17 C -0.100 4.100 18 C -0.110 4.110 19 C -0.055 4.055 20 Cl -0.085 7.085 21 N -0.551 5.551 22 H 0.421 0.579 23 H 0.269 0.731 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.190 0.810 27 H 0.148 0.852 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.926 -13.947 -6.751 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.164 1.164 7 C -0.555 4.555 8 H 0.043 0.957 9 C 0.028 3.972 10 C -0.019 4.019 11 N -0.244 5.244 12 C -0.167 4.167 13 C -0.124 4.124 14 C -0.019 4.019 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.129 4.129 19 C -0.082 4.082 20 Cl -0.056 7.056 21 N -0.155 5.155 22 H 0.262 0.738 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.207 0.793 27 H 0.165 0.835 28 H 0.185 0.815 29 H 0.186 0.814 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 20.145 -13.631 -6.146 25.088 hybrid contribution -0.120 1.053 -1.062 1.501 sum 20.024 -12.578 -7.208 24.721 Atomic orbital electron populations 1.70061 1.08488 1.28383 1.52002 1.25988 0.95696 1.03442 0.93787 0.85616 0.79621 0.77616 0.79545 1.18511 1.20788 1.16402 1.20950 0.90119 0.93298 1.51177 0.95684 1.18107 0.95036 0.85126 0.98889 1.23542 0.92292 0.97954 0.88070 1.70148 1.25333 1.00818 1.28076 1.22828 0.98703 0.97931 0.97215 1.19660 1.06784 0.85183 1.00781 1.17929 0.97371 0.96165 0.90436 1.21440 0.94644 0.94114 1.01076 1.21608 0.97670 0.97724 0.94979 1.21643 0.98037 0.97997 0.94151 1.21274 0.95640 0.94261 1.01715 1.21349 0.98993 0.96862 0.91043 1.98388 1.71512 1.62342 1.73348 1.43423 1.36753 1.10148 1.25133 0.73840 0.92243 0.92966 0.93212 0.79306 0.83470 0.81522 0.81412 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 2 C 0.01 0.47 5.47 84.66 0.46 0.93 16 3 Si 0.95 43.41 27.47 68.60 1.88 45.30 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 7 C -0.52 -31.15 9.61 25.60 0.25 -30.90 16 8 H 0.02 1.73 7.98 -2.91 -0.02 1.71 16 9 C 0.07 3.28 4.67 29.10 0.14 3.42 16 10 C 0.25 11.21 7.36 138.09 1.02 12.22 16 11 N -0.52 -24.94 11.17 -187.26 -2.09 -27.03 16 12 C -0.02 -0.64 11.63 83.89 0.98 0.34 16 13 C -0.01 -0.31 6.23 40.29 0.25 -0.06 16 14 C -0.02 -0.43 5.83 -20.07 -0.12 -0.55 16 15 C -0.09 -1.75 9.62 22.52 0.22 -1.53 16 16 C -0.10 -1.26 10.03 22.24 0.22 -1.03 16 17 C -0.10 -1.18 10.04 22.32 0.22 -0.96 16 18 C -0.11 -1.87 9.82 22.26 0.22 -1.65 16 19 C -0.06 -1.34 6.35 22.57 0.14 -1.19 16 20 Cl -0.08 -2.35 26.26 -2.72 -0.07 -2.42 16 21 N -0.55 -20.42 5.41 -175.66 -0.95 -21.37 16 22 H 0.42 13.67 7.68 -92.71 -0.71 12.96 16 23 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 24 H 0.05 2.48 7.20 -2.39 -0.02 2.47 16 25 H 0.05 2.16 7.57 -2.39 -0.02 2.15 16 26 H 0.19 5.74 8.06 -2.91 -0.02 5.72 16 27 H 0.15 2.37 8.04 -2.91 -0.02 2.35 16 28 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 29 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 30 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -76.17 280.68 3.47 -72.70 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.41 Total: 14.35 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 4.00 Total: -20.98 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -2.74 Total: -108.94 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.30 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.07 Total: -2.42 kcal Total: -76.17 3.47 -72.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259840660.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.224 kcal (2) G-P(sol) polarization free energy of solvation -76.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds