Wall clock time and date at job start Mon Mar 30 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00349 * 2 1 4 4 H 1.48501 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47247 * 300.00278 * 3 2 1 6 6 H 1.48502 * 109.47037 * 59.99575 * 3 2 1 7 7 C 1.37881 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.39505 * 125.70178 * 125.00285 * 10 9 7 12 12 C 1.36625 * 107.84912 * 179.97438 * 11 10 9 13 13 C 1.47983 * 126.33472 * 179.97438 * 12 11 10 14 14 C 1.39525 * 120.12799 * 359.72114 * 13 12 11 15 15 C 1.37965 * 119.88247 * 179.76798 * 14 13 12 16 16 C 1.38346 * 120.14999 * 0.51051 * 15 14 13 17 17 C 1.38440 * 120.26975 * 359.74417 * 16 15 14 18 18 Cl 1.73597 * 119.94957 * 180.02562 * 17 16 15 19 19 C 1.38120 * 120.10395 * 359.97438 * 17 16 15 20 20 N 1.36288 * 107.32367 * 0.02562 * 12 11 10 21 21 H 0.97001 * 126.13896 * 180.02562 * 20 12 11 22 22 N 1.30893 * 125.70225 * 304.94380 * 10 9 7 23 23 H 0.97007 * 119.99699 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46669 * 59.99901 * 9 7 2 25 25 H 1.08999 * 109.47024 * 299.99964 * 9 7 2 26 26 H 1.07995 * 126.07203 * 0.21129 * 11 10 9 27 27 H 1.07992 * 120.06437 * 0.02562 * 14 13 12 28 28 H 1.07999 * 119.92982 * 180.25317 * 15 14 13 29 29 H 1.08002 * 119.86983 * 179.71965 * 16 15 14 30 30 H 1.08007 * 120.07575 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.2653 -4.6857 0.9274 12 6 3.2926 -5.5184 0.5840 13 6 3.6951 -6.7531 1.2935 14 6 3.0043 -7.1619 2.4347 15 6 3.3808 -8.3165 3.0894 16 6 4.4479 -9.0633 2.6230 17 6 5.1411 -8.6607 1.4943 18 17 6.4784 -9.6045 0.9159 19 6 4.7698 -7.5097 0.8271 20 7 3.8788 -5.0007 -0.5322 21 1 4.6365 -5.3765 -1.0070 22 7 3.1893 -3.8296 -0.8718 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 1.5966 -4.8130 1.7658 27 1 2.1736 -6.5779 2.8025 28 1 2.8440 -8.6358 3.9704 29 1 4.7416 -9.9640 3.1416 30 1 5.3112 -7.1958 -0.0531 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259873461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:25 Heat of formation + Delta-G solvation = 58.670304 kcal Electronic energy + Delta-G solvation = -15885.631856 eV Core-core repulsion = 13092.856907 eV Total energy + Delta-G solvation = -2792.774950 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.11865 -40.00858 -37.48368 -35.56638 -33.74816 -32.70383 -31.84876 -29.84661 -29.37386 -25.56247 -24.38633 -23.62453 -21.39402 -20.44312 -19.27423 -18.45802 -17.29341 -16.61043 -16.46458 -16.18723 -15.72746 -14.96936 -14.64925 -14.54930 -14.45384 -14.19601 -13.92425 -13.51136 -12.83783 -12.73335 -12.57799 -12.57367 -12.37158 -11.97772 -11.81800 -11.64664 -11.29726 -10.77851 -10.57259 -9.92221 -9.84057 -9.13085 -8.19564 -6.28780 -0.28244 0.15330 1.06441 1.20325 1.40614 1.41423 1.54747 1.92957 1.94509 2.44284 2.72069 3.13626 3.37589 3.75238 3.94195 4.06215 4.13588 4.26582 4.43342 4.68342 4.74012 4.86845 4.94338 5.14008 5.29341 5.32085 5.38916 5.52326 5.70255 5.72956 5.75472 6.18740 6.45303 6.78737 6.90081 7.38208 8.91911 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.040745 B = 0.003654 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.028420 B = 7661.686689 C = 7995.857115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.525 4.525 8 H 0.047 0.953 9 C 0.094 3.906 10 C 0.092 3.908 11 C -0.260 4.260 12 C 0.123 3.877 13 C -0.025 4.025 14 C -0.093 4.093 15 C -0.093 4.093 16 C -0.102 4.102 17 C -0.040 4.040 18 Cl -0.067 7.067 19 C -0.112 4.112 20 N -0.477 5.477 21 H 0.444 0.556 22 N -0.317 5.317 23 H 0.267 0.733 24 H 0.011 0.989 25 H 0.031 0.969 26 H 0.165 0.835 27 H 0.147 0.853 28 H 0.172 0.828 29 H 0.160 0.840 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.500 -21.159 7.153 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.066 0.934 9 C 0.055 3.945 10 C -0.073 4.073 11 C -0.289 4.289 12 C -0.005 4.005 13 C -0.027 4.027 14 C -0.112 4.112 15 C -0.111 4.111 16 C -0.121 4.121 17 C -0.067 4.067 18 Cl -0.038 7.038 19 C -0.132 4.132 20 N -0.188 5.188 21 H 0.290 0.710 22 N -0.140 5.140 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.049 0.951 26 H 0.182 0.818 27 H 0.165 0.835 28 H 0.189 0.811 29 H 0.178 0.822 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.032 -20.644 6.032 23.731 hybrid contribution 0.357 0.593 -0.030 0.693 sum 10.388 -20.051 6.002 23.366 Atomic orbital electron populations 1.70057 1.07341 1.27910 1.51377 1.25832 0.95814 1.02810 0.94655 0.85405 0.78592 0.78959 0.78097 1.19713 1.20181 1.19663 1.21324 0.92849 0.91376 1.50783 0.93421 1.17571 0.91416 0.88618 0.96897 1.22823 0.95134 0.96609 0.92755 1.21605 1.04422 0.97253 1.05635 1.19695 0.95375 0.95235 0.90243 1.17975 0.96903 0.91555 0.96279 1.21599 0.99420 0.97125 0.93078 1.21445 0.96049 0.93103 1.00482 1.21528 0.94997 1.01235 0.94294 1.20850 0.93402 0.94513 0.97931 1.98380 1.45198 1.71679 1.88552 1.21051 0.97005 0.94331 1.00779 1.46587 1.29044 1.20070 1.23072 0.71019 1.77332 1.10626 1.01221 1.24853 0.92453 0.97068 0.95059 0.81789 0.83512 0.81053 0.82201 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.52 -31.11 9.06 25.60 0.23 -30.87 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.09 5.16 5.55 29.10 0.16 5.32 16 10 C 0.09 4.33 6.41 43.00 0.28 4.61 16 11 C -0.26 -9.82 10.10 22.20 0.22 -9.59 16 12 C 0.12 3.92 6.97 40.66 0.28 4.20 16 13 C -0.02 -0.59 5.87 -20.09 -0.12 -0.71 16 14 C -0.09 -1.75 9.57 22.52 0.22 -1.54 16 15 C -0.09 -1.23 10.03 22.23 0.22 -1.00 16 16 C -0.10 -1.40 9.82 22.34 0.22 -1.18 16 17 C -0.04 -0.71 6.31 22.29 0.14 -0.57 16 18 Cl -0.07 -1.11 28.95 -2.72 -0.08 -1.19 16 19 C -0.11 -2.31 9.49 22.54 0.21 -2.10 16 20 N -0.48 -16.38 7.30 -48.61 -0.35 -16.73 16 21 H 0.44 11.71 8.12 -213.34 -1.73 9.98 16 22 N -0.32 -14.48 12.64 -47.58 -0.60 -15.09 16 23 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 24 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.03 1.73 8.12 -2.39 -0.02 1.71 16 26 H 0.16 5.27 7.28 -2.91 -0.02 5.25 16 27 H 0.15 2.52 7.02 -2.91 -0.02 2.50 16 28 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 30 H 0.13 2.50 7.21 -2.91 -0.02 2.48 16 Total: -1.00 -70.25 285.73 3.26 -66.99 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -0.55 Total: 6.64 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 2.53 Total: -32.55 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -0.67 Total: -87.39 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -70.25 3.26 -66.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259873461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.661 kcal (2) G-P(sol) polarization free energy of solvation -70.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds