Wall clock time and date at job start Mon Mar 30 2020 06:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86806 * 119.99918 * 2 1 4 4 H 1.48503 * 109.46881 * 274.98276 * 3 2 1 5 5 H 1.48500 * 109.46951 * 34.98348 * 3 2 1 6 6 H 1.48495 * 109.46863 * 154.98123 * 3 2 1 7 7 C 1.39847 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00359 * 186.01750 * 7 2 1 9 9 C 1.41425 * 120.00068 * 6.02286 * 7 2 1 10 10 C 1.42234 * 126.56903 * 174.29725 * 9 7 2 11 11 C 1.35079 * 105.54500 * 180.02562 * 10 9 7 12 12 C 1.50708 * 126.30632 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47103 * 275.00241 * 12 11 10 14 14 C 1.38238 * 120.01087 * 264.72523 * 13 12 11 15 15 C 1.38219 * 120.01717 * 179.77067 * 14 13 12 16 16 C 1.38263 * 120.02080 * 0.50957 * 15 14 13 17 17 C 1.38191 * 120.01999 * 359.74430 * 16 15 14 18 18 C 1.38333 * 120.00385 * 85.00404 * 13 12 11 19 19 Cl 1.73599 * 120.01508 * 359.95315 * 18 13 12 20 20 N 1.35893 * 107.38031 * 0.02562 * 11 10 9 21 21 H 0.97001 * 124.86081 * 179.97438 * 20 11 10 22 22 N 1.28473 * 110.27631 * 359.97438 * 20 11 10 23 23 H 0.97006 * 120.00162 * 0.02562 * 1 2 3 24 24 H 1.07997 * 127.23120 * 0.06176 * 10 9 7 25 25 H 1.09001 * 109.46844 * 35.00825 * 12 11 10 26 26 H 1.09004 * 109.46701 * 155.00441 * 12 11 10 27 27 H 1.07999 * 119.98635 * 0.02562 * 14 13 12 28 28 H 1.07999 * 119.98892 * 180.22838 * 15 14 13 29 29 H 1.08001 * 119.98984 * 179.76812 * 16 15 14 30 30 H 1.07998 * 120.01132 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4969 2.6200 0.8027 6 1 3.5890 1.4121 0.5921 7 6 2.0081 -1.2111 -0.0005 8 1 3.0837 -1.2138 0.0975 9 6 1.3069 -2.4325 -0.1296 10 6 1.8787 -3.7282 -0.2604 11 6 0.8327 -4.5778 -0.3534 12 6 0.9102 -6.0749 -0.5080 13 6 1.0664 -6.4219 -1.9661 14 6 -0.0453 -6.7375 -2.7247 15 6 0.0973 -7.0511 -4.0633 16 6 1.3530 -7.0597 -4.6418 17 6 2.4658 -6.7495 -3.8833 18 6 2.3230 -6.4303 -2.5444 19 17 3.7203 -6.0399 -1.5910 20 7 -0.3022 -3.8337 -0.2829 21 1 -1.2030 -4.1910 -0.3248 22 7 -0.0111 -2.5891 -0.1528 23 1 -0.4851 0.8401 -0.0004 24 1 2.9287 -3.9800 -0.2806 25 1 1.7667 -6.4539 0.0495 26 1 -0.0034 -6.5277 -0.1226 27 1 -1.0260 -6.7349 -2.2723 28 1 -0.7720 -7.2940 -4.6564 29 1 1.4643 -7.3084 -5.6869 30 1 3.4466 -6.7566 -4.3353 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259917588.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:34 Heat of formation + Delta-G solvation = 79.841587 kcal Electronic energy + Delta-G solvation = -16587.522974 eV Core-core repulsion = 13795.666080 eV Total energy + Delta-G solvation = -2791.856894 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40945 -39.15091 -36.17751 -33.61158 -32.94974 -30.66618 -29.93214 -29.14233 -25.77073 -25.23460 -22.62246 -21.55636 -19.88778 -19.35974 -17.03738 -16.13025 -16.09700 -15.41078 -15.28774 -14.50423 -13.90498 -13.70487 -13.33197 -12.84552 -12.73951 -12.42801 -12.27014 -11.72359 -11.46261 -11.23149 -11.11801 -11.04029 -10.71758 -10.42710 -10.32054 -9.79184 -9.11581 -8.83569 -8.50620 -8.27603 -7.46686 -7.21113 -6.17886 -4.02755 1.25423 1.33152 2.38655 3.22427 3.30754 3.35057 3.50236 3.76006 4.28647 4.52624 4.64439 4.83103 4.88048 5.02683 5.28375 5.42640 5.60777 5.73891 5.76548 5.82610 5.92475 6.14297 6.28402 6.41699 6.50075 6.83078 6.85839 7.39571 7.45042 7.58485 7.94502 8.52710 8.93465 9.13161 9.41047 10.39347 10.81086 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.005639 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.178435 B = 4963.830990 C = 5290.810115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.450 4.450 8 H 0.076 0.924 9 C 0.188 3.812 10 C -0.267 4.267 11 C -0.019 4.019 12 C -0.007 4.007 13 C -0.055 4.055 14 C -0.108 4.108 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.024 4.024 19 Cl -0.059 7.059 20 N -0.437 5.437 21 H 0.413 0.587 22 N -0.324 5.324 23 H 0.265 0.735 24 H 0.123 0.877 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 -14.548 -6.416 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.038 3.962 10 C -0.299 4.299 11 C -0.145 4.145 12 C -0.046 4.046 13 C -0.057 4.057 14 C -0.126 4.126 15 C -0.135 4.135 16 C -0.138 4.138 17 C -0.130 4.130 18 C -0.050 4.050 19 Cl -0.030 7.030 20 N -0.144 5.144 21 H 0.252 0.748 22 N -0.156 5.156 23 H 0.076 0.924 24 H 0.141 0.859 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.291 -13.796 -6.253 15.150 hybrid contribution 0.831 0.287 -0.129 0.888 sum 1.122 -13.509 -6.382 14.983 Atomic orbital electron populations 1.69978 1.06746 1.26955 1.37880 1.25712 0.94697 1.00110 0.93918 0.86443 0.80368 0.82122 0.78434 1.20146 1.20799 1.19018 1.18504 0.93695 0.88297 1.48485 0.90584 1.19301 0.88045 0.92422 0.96402 1.21453 0.97165 0.93670 1.17571 1.20626 0.89273 0.91900 1.12721 1.18982 1.03099 0.91581 0.90932 1.19817 0.91426 0.97244 0.97178 1.20988 0.97874 0.99716 0.94031 1.21162 0.97476 0.99889 0.94987 1.21023 0.92196 1.00822 0.99731 1.21026 0.99800 1.00196 0.92011 1.20809 0.88504 1.03161 0.92552 1.98369 1.40422 1.92309 1.71932 1.43550 1.06115 1.05490 1.59236 0.74846 1.74691 1.17037 0.93941 1.29969 0.92415 0.85865 0.89203 0.90914 0.85532 0.85770 0.85539 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -23.14 12.00 55.54 0.67 -22.48 16 2 C 0.07 2.05 5.49 -17.35 -0.10 1.96 16 3 Si 0.90 20.77 29.56 -169.99 -5.03 15.74 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.45 -13.20 9.41 -37.77 -0.36 -13.55 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.19 5.42 6.78 -84.72 -0.57 4.85 16 10 C -0.27 -6.59 10.33 -39.17 -0.40 -6.99 16 11 C -0.02 -0.39 6.47 -81.91 -0.53 -0.93 16 12 C -0.01 -0.11 5.41 -29.03 -0.16 -0.27 16 13 C -0.06 -0.84 5.12 -104.59 -0.54 -1.37 16 14 C -0.11 -1.41 9.68 -39.59 -0.38 -1.79 16 15 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 16 C -0.12 -1.36 10.04 -39.59 -0.40 -1.76 16 17 C -0.11 -1.44 9.83 -39.55 -0.39 -1.83 16 18 C -0.02 -0.36 6.32 -39.49 -0.25 -0.60 16 19 Cl -0.06 -0.92 25.34 -51.86 -1.31 -2.23 16 20 N -0.44 -9.98 6.86 33.60 0.23 -9.75 16 21 H 0.41 7.77 8.96 -190.44 -1.71 6.07 16 22 N -0.32 -9.15 10.52 32.34 0.34 -8.81 16 23 H 0.27 7.20 8.30 -40.82 -0.34 6.86 16 24 H 0.12 2.86 6.53 -52.49 -0.34 2.51 16 25 H 0.09 1.38 7.13 -51.93 -0.37 1.01 16 26 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 27 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 279.56 15.07 4.21 4.21 Total: -1.00 -33.32 279.56 -9.43 -42.75 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.08 Total: 4.60 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -4.47 Total: -24.04 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 1.24 Total: -41.03 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.31 Total: -2.23 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.32 -9.43 -42.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259917588.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.596 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds