Wall clock time and date at job start Mon Mar 30 2020 06:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30891 * 1 3 3 Si 1.86802 * 119.99887 * 2 1 4 4 H 1.48494 * 109.46831 * 274.96980 * 3 2 1 5 5 H 1.48493 * 109.47139 * 34.97521 * 3 2 1 6 6 H 1.48501 * 109.46783 * 154.97806 * 3 2 1 7 7 C 1.39854 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00232 * 186.27022 * 7 2 1 9 9 C 1.41432 * 119.99967 * 6.26654 * 7 2 1 10 10 N 1.32756 * 126.56869 * 355.91054 * 9 7 2 11 11 N 1.28467 * 109.93016 * 180.30576 * 10 9 7 12 12 H 0.97008 * 124.86112 * 179.68772 * 11 10 9 13 13 C 1.35898 * 110.28184 * 359.71711 * 11 10 9 14 14 C 1.35070 * 107.37447 * 359.97438 * 13 11 10 15 15 C 1.50702 * 127.22510 * 180.02562 * 14 13 11 16 16 C 1.50690 * 109.47322 * 265.02319 * 15 14 13 17 17 C 1.38263 * 119.99765 * 89.99973 * 16 15 14 18 18 C 1.38219 * 120.03267 * 179.72908 * 17 16 15 19 19 C 1.38234 * 120.00853 * 0.27164 * 18 17 16 20 20 C 1.38333 * 119.99086 * 0.02562 * 19 18 17 21 21 Cl 1.73594 * 120.01486 * 179.97438 * 20 19 18 22 22 C 1.38199 * 119.99425 * 270.27950 * 16 15 14 23 23 H 0.97005 * 119.99828 * 359.97438 * 1 2 3 24 24 H 1.07994 * 126.31267 * 179.97438 * 13 11 10 25 25 H 1.09001 * 109.47248 * 145.02124 * 15 14 13 26 26 H 1.08999 * 109.46878 * 25.02420 * 15 14 13 27 27 H 1.08007 * 119.98310 * 0.02562 * 17 16 15 28 28 H 1.07993 * 119.99370 * 180.29913 * 18 17 16 29 29 H 1.08003 * 120.00274 * 179.97438 * 19 18 17 30 30 H 1.07997 * 120.00884 * 359.97141 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3853 2.1070 -1.3948 5 1 1.4969 2.6200 0.8025 6 1 3.5891 1.4121 0.5922 7 6 2.0082 -1.2112 0.0005 8 1 3.0833 -1.2140 0.1027 9 6 1.3073 -2.4324 -0.1326 10 7 -0.0101 -2.5861 -0.1898 11 7 -0.3010 -3.8321 -0.3052 12 1 -1.2015 -4.1884 -0.3612 13 6 0.8335 -4.5797 -0.3369 14 6 1.8790 -3.7307 -0.2346 15 6 3.3437 -4.0854 -0.2239 16 6 3.8211 -4.2054 1.2004 17 6 3.7583 -5.4242 1.8501 18 6 4.2012 -5.5364 3.1546 19 6 4.7020 -4.4285 3.8124 20 6 4.7594 -3.2073 3.1650 21 17 5.3876 -1.8155 3.9906 22 6 4.3162 -3.0958 1.8589 23 1 -0.4850 0.8401 0.0004 24 1 0.8888 -5.6544 -0.4273 25 1 3.9101 -3.3052 -0.7324 26 1 3.4912 -5.0352 -0.7378 27 1 3.3674 -6.2902 1.3364 28 1 4.1563 -6.4898 3.6599 29 1 5.0476 -4.5161 4.8318 30 1 4.3614 -2.1429 1.3527 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259939566.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:36 Heat of formation + Delta-G solvation = 76.864666 kcal Electronic energy + Delta-G solvation = -16775.920637 eV Core-core repulsion = 13983.934654 eV Total energy + Delta-G solvation = -2791.985983 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38957 -38.86943 -36.13535 -33.47501 -32.95123 -30.34854 -29.81050 -28.86196 -25.84970 -25.26814 -22.28924 -21.26218 -20.21178 -18.60299 -16.82735 -16.51810 -16.07893 -15.07988 -15.05592 -14.55617 -13.67211 -13.41265 -13.18842 -12.96219 -12.64106 -12.42145 -12.14800 -11.48578 -11.16772 -11.09045 -11.00161 -10.92722 -10.61333 -10.50045 -10.22247 -9.76150 -9.17193 -8.51927 -8.38158 -8.17629 -7.45932 -7.32230 -6.23984 -4.09234 1.56129 1.70188 2.49449 3.18948 3.28412 3.31957 3.53297 4.06118 4.23990 4.44113 4.68658 5.12645 5.23082 5.44501 5.64630 5.74835 5.78807 5.91041 6.05196 6.20214 6.32178 6.44903 6.60074 6.62773 6.69920 6.98810 7.17068 7.21466 7.44136 7.54500 7.85452 8.44737 8.87382 9.06542 9.34030 10.33134 10.74509 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.008891 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.786654 B = 3148.366104 C = 4642.031734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.074 3.926 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.445 4.445 8 H 0.077 0.923 9 C 0.203 3.797 10 N -0.333 5.333 11 N -0.440 5.440 12 H 0.417 0.583 13 C -0.040 4.040 14 C -0.259 4.259 15 C 0.015 3.985 16 C -0.039 4.039 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.130 4.130 20 C -0.032 4.032 21 Cl -0.084 7.084 22 C -0.093 4.093 23 H 0.266 0.734 24 H 0.139 0.861 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 -8.819 3.819 12.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.484 4.484 8 H 0.095 0.905 9 C 0.053 3.947 10 N -0.166 5.166 11 N -0.145 5.145 12 H 0.256 0.744 13 C -0.187 4.187 14 C -0.272 4.272 15 C -0.024 4.024 16 C -0.040 4.040 17 C -0.136 4.136 18 C -0.133 4.133 19 C -0.149 4.149 20 C -0.058 4.058 21 Cl -0.055 7.055 22 C -0.111 4.111 23 H 0.077 0.923 24 H 0.157 0.843 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.254 -7.987 3.911 10.872 hybrid contribution 0.585 0.247 0.155 0.654 sum 6.839 -7.740 4.066 11.100 Atomic orbital electron populations 1.69976 1.06769 1.27070 1.37172 1.25708 0.94670 1.00121 0.93855 0.86524 0.80632 0.82335 0.78514 1.20067 1.20746 1.18740 1.18447 0.93577 0.88129 1.48225 0.90521 1.19187 0.87818 0.91807 0.95864 1.74722 1.16811 0.94432 1.30678 1.43511 1.06727 1.05710 1.58525 0.74405 1.22151 0.88175 0.96458 1.11945 1.19895 0.92751 0.94693 1.19905 1.18584 0.92782 1.00696 0.90303 1.20076 0.94266 0.92041 0.97568 1.21072 1.00082 0.97643 0.94779 1.20943 0.99547 0.97838 0.94971 1.20864 1.02531 0.91458 1.00030 1.20909 1.02778 0.88141 0.93980 1.98342 1.85717 1.42662 1.78789 1.21164 0.97384 0.99983 0.92586 0.92324 0.84309 0.90716 0.92039 0.86073 0.85932 0.85875 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.38 12.00 55.54 0.67 -21.71 16 2 C 0.07 2.02 5.49 -17.35 -0.10 1.93 16 3 Si 0.89 20.21 29.56 -169.99 -5.03 15.18 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.44 -12.15 9.25 -37.76 -0.35 -12.50 16 8 H 0.08 1.96 6.39 -52.49 -0.34 1.62 16 9 C 0.20 5.48 6.78 -84.72 -0.57 4.91 16 10 N -0.33 -9.12 10.52 32.34 0.34 -8.78 16 11 N -0.44 -9.71 6.86 30.58 0.21 -9.50 16 12 H 0.42 7.51 8.96 -190.43 -1.71 5.80 16 13 C -0.04 -0.81 11.97 -16.88 -0.20 -1.02 16 14 C -0.26 -5.80 5.49 -104.22 -0.57 -6.37 16 15 C 0.01 0.27 5.72 -29.04 -0.17 0.10 16 16 C -0.04 -0.68 5.11 -104.63 -0.54 -1.22 16 17 C -0.12 -1.77 9.70 -39.58 -0.38 -2.15 16 18 C -0.11 -1.57 10.05 -39.59 -0.40 -1.97 16 19 C -0.13 -1.89 9.83 -39.55 -0.39 -2.28 16 20 C -0.03 -0.53 6.32 -39.50 -0.25 -0.78 16 21 Cl -0.08 -1.33 28.96 -51.86 -1.50 -2.83 16 22 C -0.09 -1.70 9.49 -39.55 -0.38 -2.07 16 23 H 0.27 7.07 8.30 -40.82 -0.34 6.74 16 24 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 25 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 26 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 27 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.14 2.72 6.61 -52.49 -0.35 2.37 16 LS Contribution 283.08 15.07 4.27 4.27 Total: -1.00 -31.55 283.08 -9.39 -40.94 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.05 Total: 5.86 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -4.29 Total: -23.42 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 1.22 Total: -40.00 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.50 Total: -2.83 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.55 -9.39 -40.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939566.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.803 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds