Wall clock time and date at job start Mon Mar 30 2020 06:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30891 * 1 3 3 Si 1.86802 * 119.99887 * 2 1 4 4 H 1.48494 * 109.46831 * 274.96980 * 3 2 1 5 5 H 1.48493 * 109.47139 * 34.97521 * 3 2 1 6 6 H 1.48501 * 109.46783 * 154.97806 * 3 2 1 7 7 C 1.39854 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00232 * 186.27022 * 7 2 1 9 9 C 1.41432 * 119.99967 * 6.26654 * 7 2 1 10 10 N 1.32756 * 126.56869 * 355.91054 * 9 7 2 11 11 N 1.28467 * 109.93016 * 180.30576 * 10 9 7 12 12 H 0.97008 * 124.86112 * 179.68772 * 11 10 9 13 13 C 1.35898 * 110.28184 * 359.71711 * 11 10 9 14 14 C 1.35070 * 107.37447 * 359.97438 * 13 11 10 15 15 C 1.50702 * 127.22510 * 180.02562 * 14 13 11 16 16 C 1.50690 * 109.47322 * 265.02319 * 15 14 13 17 17 C 1.38263 * 119.99765 * 89.99973 * 16 15 14 18 18 C 1.38219 * 120.03267 * 179.72908 * 17 16 15 19 19 C 1.38234 * 120.00853 * 0.27164 * 18 17 16 20 20 C 1.38333 * 119.99086 * 0.02562 * 19 18 17 21 21 Cl 1.73594 * 120.01486 * 179.97438 * 20 19 18 22 22 C 1.38199 * 119.99425 * 270.27950 * 16 15 14 23 23 H 0.97005 * 119.99828 * 359.97438 * 1 2 3 24 24 H 1.07994 * 126.31267 * 179.97438 * 13 11 10 25 25 H 1.09001 * 109.47248 * 145.02124 * 15 14 13 26 26 H 1.08999 * 109.46878 * 25.02420 * 15 14 13 27 27 H 1.08007 * 119.98310 * 0.02562 * 17 16 15 28 28 H 1.07993 * 119.99370 * 180.29913 * 18 17 16 29 29 H 1.08003 * 120.00274 * 179.97438 * 19 18 17 30 30 H 1.07997 * 120.00884 * 359.97141 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3853 2.1070 -1.3948 5 1 1.4969 2.6200 0.8025 6 1 3.5891 1.4121 0.5922 7 6 2.0082 -1.2112 0.0005 8 1 3.0833 -1.2140 0.1027 9 6 1.3073 -2.4324 -0.1326 10 7 -0.0101 -2.5861 -0.1898 11 7 -0.3010 -3.8321 -0.3052 12 1 -1.2015 -4.1884 -0.3612 13 6 0.8335 -4.5797 -0.3369 14 6 1.8790 -3.7307 -0.2346 15 6 3.3437 -4.0854 -0.2239 16 6 3.8211 -4.2054 1.2004 17 6 3.7583 -5.4242 1.8501 18 6 4.2012 -5.5364 3.1546 19 6 4.7020 -4.4285 3.8124 20 6 4.7594 -3.2073 3.1650 21 17 5.3876 -1.8155 3.9906 22 6 4.3162 -3.0958 1.8589 23 1 -0.4850 0.8401 0.0004 24 1 0.8888 -5.6544 -0.4273 25 1 3.9101 -3.3052 -0.7324 26 1 3.4912 -5.0352 -0.7378 27 1 3.3674 -6.2902 1.3364 28 1 4.1563 -6.4898 3.6599 29 1 5.0476 -4.5161 4.8318 30 1 4.3614 -2.1429 1.3527 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259939566.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:36 Heat of formation + Delta-G solvation = 58.433630 kcal Electronic energy + Delta-G solvation = -16776.719866 eV Core-core repulsion = 13983.934654 eV Total energy + Delta-G solvation = -2792.785213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.16524 -40.09315 -37.37957 -35.31911 -34.49752 -31.55893 -31.52044 -30.51921 -27.65403 -26.89428 -23.50016 -22.54756 -22.09851 -20.26307 -18.48415 -18.24003 -17.56493 -16.47295 -16.29521 -16.26115 -15.31974 -14.83044 -14.59341 -14.53441 -14.14178 -13.93361 -13.59926 -13.02031 -12.92148 -12.57413 -12.35731 -12.30176 -12.19089 -12.00268 -11.66653 -11.57548 -11.14110 -10.25281 -9.67894 -9.48606 -9.39046 -9.02046 -8.24659 -6.13255 0.35675 0.49615 1.25911 1.37862 1.41034 1.53234 1.90393 2.34200 2.45757 2.84571 3.12575 3.69358 4.01976 4.07974 4.30598 4.43520 4.52719 4.60630 4.71807 4.80581 4.96887 5.11230 5.19355 5.36603 5.44253 5.51307 5.55095 5.64257 5.88315 6.04285 6.08359 6.51051 7.07024 7.14057 7.40622 8.45717 8.76165 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.008891 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.786654 B = 3148.366104 C = 4642.031734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.024 3.976 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.468 4.468 8 H 0.078 0.922 9 C 0.162 3.838 10 N -0.379 5.379 11 N -0.441 5.441 12 H 0.433 0.567 13 C -0.018 4.018 14 C -0.273 4.273 15 C 0.020 3.980 16 C -0.057 4.057 17 C -0.115 4.115 18 C -0.105 4.105 19 C -0.128 4.128 20 C -0.048 4.048 21 Cl -0.087 7.087 22 C -0.120 4.120 23 H 0.267 0.733 24 H 0.195 0.805 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.151 0.849 28 H 0.164 0.836 29 H 0.148 0.852 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 -11.407 4.502 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.189 4.189 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.507 4.507 8 H 0.096 0.904 9 C 0.012 3.988 10 N -0.213 5.213 11 N -0.148 5.148 12 H 0.274 0.726 13 C -0.165 4.165 14 C -0.286 4.286 15 C -0.018 4.018 16 C -0.057 4.057 17 C -0.133 4.133 18 C -0.123 4.123 19 C -0.147 4.147 20 C -0.074 4.074 21 Cl -0.058 7.058 22 C -0.139 4.139 23 H 0.077 0.923 24 H 0.211 0.789 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.169 0.831 28 H 0.182 0.818 29 H 0.166 0.834 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.128 -10.592 4.591 13.568 hybrid contribution 0.311 0.874 -0.036 0.929 sum 7.439 -9.718 4.555 13.058 Atomic orbital electron populations 1.70106 1.08308 1.27799 1.39327 1.26541 0.95452 1.03529 0.93386 0.85487 0.79366 0.77945 0.78728 1.19315 1.20395 1.18111 1.18779 0.93907 0.89248 1.48725 0.90361 1.19626 0.88457 0.93768 0.96981 1.74579 1.17674 0.97287 1.31761 1.43525 1.08323 1.04744 1.58221 0.72578 1.22841 0.86500 0.98545 1.08610 1.20337 0.95387 0.93136 1.19691 1.18577 0.90083 1.01737 0.91437 1.20072 0.95412 0.92996 0.97256 1.21415 0.99212 0.97290 0.95370 1.21425 0.97404 0.99040 0.94430 1.21247 1.01641 0.90715 1.01096 1.21080 1.03479 0.89130 0.93735 1.98332 1.85747 1.43103 1.78604 1.21081 0.99589 0.99497 0.93691 0.92342 0.78850 0.92471 0.88551 0.83117 0.81846 0.83431 0.87079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.12 12.00 21.81 0.26 -48.86 16 2 C 0.02 1.37 5.49 85.22 0.47 1.83 16 3 Si 0.96 43.04 29.56 68.60 2.03 45.06 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.47 -26.57 9.25 23.45 0.22 -26.35 16 8 H 0.08 4.23 6.39 -2.91 -0.02 4.21 16 9 C 0.16 8.98 6.78 40.78 0.28 9.25 16 10 N -0.38 -21.14 10.52 -51.60 -0.54 -21.68 16 11 N -0.44 -19.02 6.86 -57.17 -0.39 -19.41 16 12 H 0.43 15.03 8.96 -219.98 -1.97 13.06 16 13 C -0.02 -0.69 11.97 83.33 1.00 0.31 16 14 C -0.27 -11.97 5.49 -19.60 -0.11 -12.08 16 15 C 0.02 0.70 5.72 29.10 0.17 0.87 16 16 C -0.06 -1.91 5.11 -19.87 -0.10 -2.01 16 17 C -0.11 -3.01 9.70 22.27 0.22 -2.79 16 18 C -0.11 -2.41 10.05 22.26 0.22 -2.19 16 19 C -0.13 -3.38 9.83 22.29 0.22 -3.16 16 20 C -0.05 -1.57 6.32 22.33 0.14 -1.43 16 21 Cl -0.09 -2.74 28.96 -2.72 -0.08 -2.82 16 22 C -0.12 -4.44 9.49 22.29 0.21 -4.23 16 23 H 0.27 14.77 8.30 -92.70 -0.77 14.00 16 24 H 0.19 5.04 8.06 -2.91 -0.02 5.02 16 25 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 26 H 0.10 2.65 8.09 -2.39 -0.02 2.63 16 27 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.11 4.63 6.61 -2.91 -0.02 4.61 16 Total: -1.00 -71.65 283.08 3.41 -68.23 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.79 Total: 21.45 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 2.93 Total: -41.98 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -0.67 Total: -89.95 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.08 Total: -2.82 kcal Total: -71.65 3.41 -68.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939566.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.667 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds