Wall clock time and date at job start Mon Mar 30 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30414 * 122.56601 * 2 1 4 4 C 1.30659 * 117.52121 * 180.02562 * 3 2 1 5 5 N 1.37645 * 125.12702 * 179.97438 * 4 3 2 6 6 C 1.39727 * 120.00121 * 354.32381 * 5 4 3 7 7 C 1.39306 * 120.87919 * 331.35389 * 6 5 4 8 8 N 1.32253 * 119.00470 * 179.76877 * 7 6 5 9 9 C 1.31801 * 120.90329 * 0.52299 * 8 7 6 10 10 N 1.31810 * 121.93836 * 359.72717 * 9 8 7 11 11 C 1.32251 * 120.90251 * 0.02562 * 10 9 8 12 12 S 1.76078 * 109.73702 * 359.75780 * 4 3 2 13 13 C 1.38486 * 122.56816 * 180.02562 * 2 1 3 14 14 C 1.39912 * 126.07906 * 359.95616 * 13 2 1 15 15 H 1.08000 * 119.99910 * 359.72312 * 14 13 2 16 16 C 1.39883 * 120.00066 * 179.97438 * 14 13 2 17 17 N 1.31010 * 120.00167 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00290 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46884 * 90.00025 * 18 16 14 20 20 H 1.48498 * 109.47356 * 210.00185 * 18 16 14 21 21 H 1.48504 * 109.46896 * 330.00350 * 18 16 14 22 22 H 1.09000 * 109.46665 * 269.97437 * 1 2 3 23 23 H 1.09003 * 109.47199 * 29.97246 * 1 2 3 24 24 H 1.08993 * 109.46915 * 149.97542 * 1 2 3 25 25 H 0.97000 * 119.99500 * 174.31931 * 5 4 3 26 26 H 1.08003 * 120.49282 * 0.02562 * 7 6 5 27 27 H 1.07993 * 119.03378 * 179.75219 * 9 8 7 28 28 H 1.08000 * 120.49728 * 180.02562 * 11 10 9 29 29 H 0.97000 * 120.00593 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2090 1.0991 0.0000 4 6 3.5105 0.9842 -0.0005 5 7 4.3984 2.0360 -0.0011 6 6 3.9290 3.3466 -0.1209 7 6 2.7468 3.6229 -0.8039 8 7 2.3343 4.8765 -0.8907 9 6 3.0304 5.8570 -0.3511 10 7 4.1561 5.6376 0.2986 11 6 4.6343 4.4121 0.4342 12 16 3.9571 -0.7190 0.0059 13 6 2.2525 -1.1671 -0.0005 14 6 1.7431 -2.4702 -0.0002 15 1 0.6753 -2.6325 0.0050 16 6 2.6166 -3.5627 -0.0014 17 7 3.9119 -3.3657 -0.0022 18 14 1.9366 -5.3025 -0.0003 19 1 1.7544 -5.7636 -1.4001 20 1 2.8865 -6.2049 0.6985 21 1 0.6280 -5.3219 0.7016 22 1 -0.3632 -0.0005 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8897 -0.5142 25 1 5.3501 1.8673 0.0817 26 1 2.1735 2.8249 -1.2522 27 1 2.6676 6.8700 -0.4436 28 1 5.5570 4.2398 0.9683 29 1 4.5177 -4.1233 -0.0026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259957961.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:51 Heat of formation + Delta-G solvation = 73.333398 kcal Electronic energy + Delta-G solvation = -16473.425068 eV Core-core repulsion = 13715.622416 eV Total energy + Delta-G solvation = -2757.802653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.058 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45782 -37.97351 -35.70657 -34.15100 -33.13745 -30.52960 -29.24926 -27.98453 -24.58217 -23.80227 -23.66207 -21.51432 -19.05137 -17.70846 -17.47124 -17.03997 -16.35035 -15.81791 -15.04967 -14.55313 -14.19798 -13.56451 -13.20504 -13.04436 -12.96283 -12.07092 -11.99678 -11.99203 -11.68552 -11.64050 -10.99679 -10.90571 -10.64117 -10.54016 -10.31716 -9.88853 -9.52146 -8.78342 -8.38418 -8.12486 -7.69360 -7.24763 -6.80471 -4.55392 1.42680 1.59042 2.38327 2.72773 2.81578 2.85817 2.94273 3.44061 3.63219 4.02842 4.03171 4.36080 4.66242 4.77759 4.85739 5.09266 5.46217 5.67292 6.04495 6.41245 6.48156 6.58988 6.68992 6.72939 6.87668 7.06940 7.32652 7.43272 7.66146 7.87186 7.89513 8.21442 8.27092 8.60536 9.53916 9.59585 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.045031 B = 0.005180 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.650653 B = 5404.510116 C = 5944.008756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.133 4.133 3 N -0.459 5.459 4 C 0.066 3.934 5 N -0.613 5.613 6 C 0.112 3.888 7 C 0.122 3.878 8 N -0.496 5.496 9 C 0.217 3.783 10 N -0.497 5.497 11 C 0.070 3.930 12 S 0.117 5.883 13 C 0.005 3.995 14 C -0.364 4.364 15 H 0.103 0.897 16 C 0.048 3.952 17 N -0.781 5.781 18 Si 0.939 3.061 19 H -0.264 1.264 20 H -0.272 1.272 21 H -0.256 1.256 22 H 0.037 0.963 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.413 0.587 26 H 0.180 0.820 27 H 0.184 0.816 28 H 0.158 0.842 29 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 1.989 -0.321 2.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.266 4.266 3 N -0.177 5.177 4 C -0.292 4.292 5 N -0.239 5.239 6 C 0.001 3.999 7 C -0.050 4.050 8 N -0.209 5.209 9 C -0.072 4.072 10 N -0.210 5.210 11 C -0.102 4.102 12 S 0.366 5.634 13 C -0.119 4.119 14 C -0.401 4.401 15 H 0.121 0.879 16 C -0.173 4.173 17 N -0.408 5.408 18 Si 0.762 3.238 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.180 1.180 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.249 0.751 26 H 0.197 0.803 27 H 0.201 0.799 28 H 0.175 0.825 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.481 2.769 -0.387 3.738 hybrid contribution -0.280 -1.722 0.223 1.759 sum 2.201 1.047 -0.164 2.443 Atomic orbital electron populations 1.19678 0.89917 1.00107 0.99500 1.19448 0.95484 0.85402 1.26282 1.65083 1.03530 1.33256 1.15848 1.23849 0.90298 0.92577 1.22525 1.40360 1.07062 0.99802 1.76677 1.19642 0.97525 0.86532 0.96194 1.23455 0.94271 0.93581 0.93730 1.68303 1.32717 1.00494 1.19386 1.24439 0.88757 0.98819 0.95177 1.68123 1.14115 1.22955 1.15808 1.22724 1.01307 0.87373 0.98773 1.85173 1.08531 0.92936 1.76768 1.22749 0.92439 0.97180 0.99542 1.19160 0.95749 0.88236 1.36931 0.87904 1.26239 0.94509 1.03651 0.92892 1.68806 1.03406 1.35190 1.33391 0.85735 0.79984 0.78320 0.79753 1.18833 1.19666 1.17969 0.94384 0.93690 0.92841 0.75119 0.80306 0.79906 0.82486 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.67 10.01 36.01 0.36 -0.31 15 2 C -0.13 -3.19 6.84 -83.10 -0.57 -3.76 15 3 N -0.46 -10.96 7.64 -9.31 -0.07 -11.03 15 4 C 0.07 1.47 8.03 -87.81 -0.70 0.77 15 5 N -0.61 -11.27 5.48 -10.28 -0.06 -11.33 15 6 C 0.11 2.04 6.46 -83.46 -0.54 1.50 15 7 C 0.12 2.41 10.05 -16.97 -0.17 2.24 15 8 N -0.50 -9.23 10.43 -14.42 -0.15 -9.38 15 9 C 0.22 3.56 12.28 -92.14 -1.13 2.43 15 10 N -0.50 -8.26 10.43 -14.41 -0.15 -8.41 15 11 C 0.07 1.12 11.25 -16.97 -0.19 0.93 15 12 S 0.12 2.66 20.47 -107.50 -2.20 0.46 15 13 C 0.00 0.11 6.23 -38.86 -0.24 -0.13 15 14 C -0.36 -8.48 8.88 -38.34 -0.34 -8.82 15 15 H 0.10 2.24 6.86 -52.49 -0.36 1.88 15 16 C 0.05 1.03 5.50 -17.29 -0.09 0.94 15 17 N -0.78 -17.41 10.74 55.55 0.60 -16.82 15 18 Si 0.94 16.25 29.56 -169.99 -5.03 11.23 15 19 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 20 H -0.27 -4.62 7.11 56.52 0.40 -4.22 15 21 H -0.26 -4.38 7.11 56.52 0.40 -3.98 15 22 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.04 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.05 1.03 7.06 -51.93 -0.37 0.66 15 25 H 0.41 6.27 8.93 -40.82 -0.36 5.90 15 26 H 0.18 3.87 6.18 -52.48 -0.32 3.54 15 27 H 0.18 2.33 8.06 -52.49 -0.42 1.91 15 28 H 0.16 2.01 8.06 -52.49 -0.42 1.59 15 29 H 0.30 6.01 8.30 -40.82 -0.34 5.67 15 LS Contribution 271.31 15.07 4.09 4.09 Total: -1.00 -26.97 271.31 -8.83 -35.80 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -2.24 Total: 9.62 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -3.62 Total: -4.23 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.17 Total: -56.97 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -5.03 Total: 11.23 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.20 Total: 0.46 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.97 -8.83 -35.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259957961.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.130 kcal (2) G-P(sol) polarization free energy of solvation -26.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds