Wall clock time and date at job start Mon Mar 30 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30414 * 122.56601 * 2 1 4 4 C 1.30659 * 117.52121 * 180.02562 * 3 2 1 5 5 N 1.37645 * 125.12702 * 179.97438 * 4 3 2 6 6 C 1.39727 * 120.00121 * 354.32381 * 5 4 3 7 7 C 1.39306 * 120.87919 * 331.35389 * 6 5 4 8 8 N 1.32253 * 119.00470 * 179.76877 * 7 6 5 9 9 C 1.31801 * 120.90329 * 0.52299 * 8 7 6 10 10 N 1.31810 * 121.93836 * 359.72717 * 9 8 7 11 11 C 1.32251 * 120.90251 * 0.02562 * 10 9 8 12 12 S 1.76078 * 109.73702 * 359.75780 * 4 3 2 13 13 C 1.38486 * 122.56816 * 180.02562 * 2 1 3 14 14 C 1.39912 * 126.07906 * 359.95616 * 13 2 1 15 15 H 1.08000 * 119.99910 * 359.72312 * 14 13 2 16 16 C 1.39883 * 120.00066 * 179.97438 * 14 13 2 17 17 N 1.31010 * 120.00167 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00290 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46884 * 90.00025 * 18 16 14 20 20 H 1.48498 * 109.47356 * 210.00185 * 18 16 14 21 21 H 1.48504 * 109.46896 * 330.00350 * 18 16 14 22 22 H 1.09000 * 109.46665 * 269.97437 * 1 2 3 23 23 H 1.09003 * 109.47199 * 29.97246 * 1 2 3 24 24 H 1.08993 * 109.46915 * 149.97542 * 1 2 3 25 25 H 0.97000 * 119.99500 * 174.31931 * 5 4 3 26 26 H 1.08003 * 120.49282 * 0.02562 * 7 6 5 27 27 H 1.07993 * 119.03378 * 179.75219 * 9 8 7 28 28 H 1.08000 * 120.49728 * 180.02562 * 11 10 9 29 29 H 0.97000 * 120.00593 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2090 1.0991 0.0000 4 6 3.5105 0.9842 -0.0005 5 7 4.3984 2.0360 -0.0011 6 6 3.9290 3.3466 -0.1209 7 6 2.7468 3.6229 -0.8039 8 7 2.3343 4.8765 -0.8907 9 6 3.0304 5.8570 -0.3511 10 7 4.1561 5.6376 0.2986 11 6 4.6343 4.4121 0.4342 12 16 3.9571 -0.7190 0.0059 13 6 2.2525 -1.1671 -0.0005 14 6 1.7431 -2.4702 -0.0002 15 1 0.6753 -2.6325 0.0050 16 6 2.6166 -3.5627 -0.0014 17 7 3.9119 -3.3657 -0.0022 18 14 1.9366 -5.3025 -0.0003 19 1 1.7544 -5.7636 -1.4001 20 1 2.8865 -6.2049 0.6985 21 1 0.6280 -5.3219 0.7016 22 1 -0.3632 -0.0005 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8897 -0.5142 25 1 5.3501 1.8673 0.0817 26 1 2.1735 2.8249 -1.2522 27 1 2.6676 6.8700 -0.4436 28 1 5.5570 4.2398 0.9683 29 1 4.5177 -4.1233 -0.0026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259957961.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:51 Heat of formation + Delta-G solvation = 58.475859 kcal Electronic energy + Delta-G solvation = -16474.069340 eV Core-core repulsion = 13715.622416 eV Total energy + Delta-G solvation = -2758.446924 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.85678 -39.65738 -37.25282 -35.79295 -34.52726 -32.14677 -30.77570 -29.66262 -26.15815 -25.27709 -25.19656 -23.11168 -20.71804 -19.32477 -19.01911 -18.37360 -17.91310 -17.38259 -16.66666 -16.05368 -15.64249 -15.21456 -14.69468 -14.44205 -14.43621 -13.70955 -13.62605 -13.58222 -13.30824 -13.15535 -12.51730 -12.33148 -12.17537 -11.99972 -11.70532 -11.44285 -11.29096 -10.19260 -10.00595 -9.84598 -9.39162 -8.88794 -8.46988 -6.28005 0.02750 0.17018 0.74939 1.03992 1.38566 1.52101 1.55847 1.73080 2.14101 2.35383 2.54698 2.95671 3.09297 3.41519 3.47760 3.69217 4.07722 4.19226 4.61447 4.84302 4.93952 5.00552 5.05689 5.09757 5.31150 5.49494 5.71937 5.91584 6.04695 6.22201 6.42813 6.55796 6.61015 7.23322 7.81162 7.99469 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.045031 B = 0.005180 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.650653 B = 5404.510116 C = 5944.008756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 C -0.165 4.165 3 N -0.480 5.480 4 C 0.077 3.923 5 N -0.608 5.608 6 C 0.096 3.904 7 C 0.103 3.897 8 N -0.513 5.513 9 C 0.224 3.776 10 N -0.501 5.501 11 C 0.093 3.907 12 S 0.111 5.889 13 C -0.027 4.027 14 C -0.390 4.390 15 H 0.109 0.891 16 C 0.013 3.987 17 N -0.805 5.805 18 Si 1.009 2.991 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.253 1.253 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.427 0.573 26 H 0.154 0.846 27 H 0.221 0.779 28 H 0.196 0.804 29 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 2.299 0.131 3.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.297 4.297 3 N -0.199 5.199 4 C -0.284 4.284 5 N -0.237 5.237 6 C -0.014 4.014 7 C -0.068 4.068 8 N -0.227 5.227 9 C -0.064 4.064 10 N -0.214 5.214 11 C -0.079 4.079 12 S 0.360 5.640 13 C -0.151 4.151 14 C -0.426 4.426 15 H 0.127 0.873 16 C -0.205 4.205 17 N -0.432 5.432 18 Si 0.828 3.172 19 H -0.184 1.184 20 H -0.188 1.188 21 H -0.176 1.176 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.266 0.734 26 H 0.171 0.829 27 H 0.237 0.763 28 H 0.212 0.788 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.137 3.106 0.057 4.415 hybrid contribution -0.395 -1.608 0.080 1.657 sum 2.741 1.498 0.137 3.127 Atomic orbital electron populations 1.19650 0.88409 1.00578 0.99843 1.19937 0.96907 0.85564 1.27324 1.65176 1.04191 1.33310 1.17204 1.24169 0.90447 0.93389 1.20375 1.40269 1.07251 0.99175 1.77021 1.19715 0.97705 0.86868 0.97064 1.23178 0.95116 0.93724 0.94785 1.68310 1.33604 1.00437 1.20325 1.25217 0.88139 0.99764 0.93284 1.68290 1.14212 1.22861 1.15998 1.23307 1.01524 0.86333 0.96731 1.84965 1.08243 0.93539 1.77301 1.23102 0.93247 0.98029 1.00676 1.19470 0.96511 0.88581 1.38036 0.87327 1.27140 0.94525 1.07105 0.91698 1.68817 1.04447 1.36718 1.33234 0.84719 0.79401 0.73223 0.79841 1.18384 1.18829 1.17602 0.94007 0.93473 0.91988 0.73394 0.82891 0.76316 0.78760 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.07 10.01 71.24 0.71 -0.36 15 2 C -0.17 -8.17 6.84 42.83 0.29 -7.88 15 3 N -0.48 -23.44 7.64 -183.36 -1.40 -24.84 15 4 C 0.08 3.46 8.03 179.37 1.44 4.90 15 5 N -0.61 -21.92 5.48 -186.43 -1.02 -22.95 15 6 C 0.10 3.37 6.46 38.40 0.25 3.62 15 7 C 0.10 4.06 10.05 84.89 0.85 4.91 15 8 N -0.51 -18.60 10.43 -199.52 -2.08 -20.68 15 9 C 0.22 6.79 12.28 180.88 2.22 9.01 15 10 N -0.50 -15.09 10.43 -199.52 -2.08 -17.17 15 11 C 0.09 2.72 11.25 84.89 0.96 3.68 15 12 S 0.11 5.13 20.47 -56.49 -1.16 3.97 15 13 C -0.03 -1.36 6.23 22.73 0.14 -1.22 15 14 C -0.39 -18.40 8.88 23.07 0.20 -18.19 15 15 H 0.11 4.80 6.86 -2.91 -0.02 4.78 15 16 C 0.01 0.57 5.50 85.21 0.47 1.04 15 17 N -0.80 -35.85 10.74 21.83 0.23 -35.61 15 18 Si 1.01 32.43 29.56 68.60 2.03 34.46 15 19 H -0.26 -8.12 7.11 99.48 0.71 -7.41 15 20 H -0.26 -8.08 7.11 99.48 0.71 -7.38 15 21 H -0.25 -7.91 7.11 99.48 0.71 -7.20 15 22 H 0.04 1.68 8.14 -2.39 -0.02 1.66 15 23 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.06 2.43 7.06 -2.39 -0.02 2.42 15 25 H 0.43 12.41 8.93 -92.71 -0.83 11.58 15 26 H 0.15 6.85 6.18 -2.91 -0.02 6.84 15 27 H 0.22 4.81 8.06 -2.91 -0.02 4.78 15 28 H 0.20 4.16 8.06 -2.91 -0.02 4.14 15 29 H 0.31 12.24 8.30 -92.71 -0.77 11.47 15 Total: -1.00 -58.22 271.31 2.44 -55.77 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.38 Total: 27.53 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 7.54 Total: -0.49 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -6.35 Total: -121.25 kcal Atomic # 14 Polarization: 32.43 SS G_CDS: 2.03 Total: 34.46 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -1.16 Total: 3.97 kcal Total: -58.22 2.44 -55.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259957961.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.249 kcal (2) G-P(sol) polarization free energy of solvation -58.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds