Wall clock time and date at job start Mon Mar 30 2020 06:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37627 * 126.60965 * 2 1 4 4 C 1.39612 * 125.70265 * 359.93135 * 3 2 1 5 5 H 1.07993 * 119.99785 * 0.02562 * 4 3 2 6 6 C 1.40243 * 120.00034 * 179.72913 * 4 3 2 7 7 N 1.30688 * 120.00188 * 0.27889 * 6 4 3 8 8 Si 1.86793 * 120.00179 * 180.27964 * 6 4 3 9 9 H 1.48503 * 109.47526 * 89.99777 * 8 6 4 10 10 H 1.48497 * 109.47424 * 209.99906 * 8 6 4 11 11 H 1.48503 * 109.47062 * 329.99954 * 8 6 4 12 12 N 1.33188 * 108.60099 * 180.20187 * 3 2 1 13 13 C 1.32222 * 109.68228 * 359.61656 * 12 3 2 14 14 C 1.37488 * 126.61336 * 179.97438 * 2 1 3 15 15 C 1.47304 * 126.68903 * 0.02562 * 14 2 1 16 16 C 1.39950 * 120.17177 * 199.99813 * 15 14 2 17 17 C 1.37841 * 119.84665 * 179.71786 * 16 15 14 18 18 C 1.38447 * 120.18991 * 0.56220 * 17 16 15 19 19 C 1.38547 * 120.34237 * 359.71199 * 18 17 16 20 20 Cl 1.73597 * 119.92630 * 180.02562 * 19 18 17 21 21 C 1.37989 * 120.14602 * 0.02562 * 19 18 17 22 22 H 1.09004 * 109.46697 * 95.96316 * 1 2 3 23 23 H 1.08998 * 109.47297 * 215.96102 * 1 2 3 24 24 H 1.08996 * 109.47481 * 335.96610 * 1 2 3 25 25 H 0.96996 * 120.00436 * 180.02562 * 7 6 4 26 26 H 1.07998 * 125.84495 * 180.12516 * 13 12 3 27 27 H 1.07998 * 120.07706 * 359.97438 * 16 15 14 28 28 H 1.07999 * 119.90192 * 180.27364 * 17 16 15 29 29 H 1.08002 * 119.83069 * 179.69807 * 18 17 16 30 30 H 1.08002 * 120.09437 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2857 1.1048 0.0000 4 6 1.8616 2.4349 -0.0014 5 1 0.8065 2.6651 -0.0021 6 6 2.8056 3.4720 0.0046 7 7 4.0824 3.1933 0.0058 8 14 2.2381 5.2516 0.0106 9 1 2.0850 5.7177 1.4123 10 1 3.2441 6.0944 -0.6841 11 1 0.9338 5.3576 -0.6914 12 7 3.5524 0.6930 -0.0044 13 6 3.5910 -0.6286 0.0010 14 6 2.2850 -1.1036 0.0005 15 6 1.8617 -2.5145 0.0006 16 6 2.7485 -3.5148 0.4149 17 6 2.3435 -4.8324 0.4178 18 6 1.0669 -5.1693 0.0014 19 6 0.1845 -4.1860 -0.4158 20 17 -1.4140 -4.6204 -0.9351 21 6 0.5734 -2.8620 -0.4193 22 1 -0.3633 -0.1068 -1.0222 23 1 -0.3634 -0.8318 0.6035 24 1 -0.3634 0.9385 0.4185 25 1 4.7354 3.9106 0.0103 26 1 4.4846 -1.2352 0.0011 27 1 3.7465 -3.2546 0.7354 28 1 3.0256 -5.6046 0.7415 29 1 0.7573 -6.2040 0.0014 30 1 -0.1150 -2.0962 -0.7450 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259990864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:39 Heat of formation + Delta-G solvation = 52.505295 kcal Electronic energy + Delta-G solvation = -16563.344639 eV Core-core repulsion = 13770.302355 eV Total energy + Delta-G solvation = -2793.042285 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.88801 -39.75895 -37.38433 -35.45618 -34.46242 -32.73421 -31.58719 -29.92977 -27.84030 -26.52501 -23.73693 -23.43345 -21.69387 -20.74872 -18.72492 -17.87308 -17.29545 -16.77642 -16.17211 -15.99170 -15.81953 -14.97665 -14.55033 -14.39393 -14.36564 -13.93127 -13.56263 -13.38336 -13.16126 -12.86348 -12.49250 -12.44862 -12.37823 -12.23532 -11.93657 -11.68490 -11.19384 -10.31882 -9.95535 -9.89542 -9.69608 -8.65468 -8.42793 -6.30628 0.08218 0.32059 1.15208 1.36909 1.43634 1.58328 1.77952 2.21692 2.54138 2.59142 2.98633 3.53294 3.91101 3.94699 4.13612 4.21239 4.37771 4.44290 4.47218 4.51387 4.63896 4.76997 4.91432 5.08825 5.21889 5.30638 5.43825 5.52455 5.71998 5.92400 6.12564 6.20197 6.51876 6.88439 7.25844 8.11770 8.51877 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.035161 B = 0.004933 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.141162 B = 5674.427171 C = 6412.378558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.512 5.512 3 C 0.352 3.648 4 C -0.481 4.481 5 H 0.094 0.906 6 C 0.033 3.967 7 N -0.780 5.780 8 Si 0.996 3.004 9 H -0.263 1.263 10 H -0.271 1.271 11 H -0.253 1.253 12 N -0.553 5.553 13 C 0.007 3.993 14 C -0.126 4.126 15 C 0.036 3.964 16 C -0.135 4.135 17 C -0.084 4.084 18 C -0.141 4.141 19 C -0.026 4.026 20 Cl -0.074 7.074 21 C -0.159 4.159 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.280 0.720 26 H 0.161 0.839 27 H 0.133 0.867 28 H 0.165 0.835 29 H 0.154 0.846 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -11.212 0.381 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.202 5.202 3 C 0.111 3.889 4 C -0.519 4.519 5 H 0.112 0.888 6 C -0.188 4.188 7 N -0.405 5.405 8 Si 0.816 3.184 9 H -0.188 1.188 10 H -0.196 1.196 11 H -0.176 1.176 12 N -0.274 5.274 13 C -0.150 4.150 14 C -0.236 4.236 15 C 0.034 3.966 16 C -0.154 4.154 17 C -0.102 4.102 18 C -0.159 4.159 19 C -0.052 4.052 20 Cl -0.045 7.045 21 C -0.178 4.178 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.178 0.822 27 H 0.150 0.850 28 H 0.183 0.817 29 H 0.172 0.828 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.520 -10.682 0.321 12.519 hybrid contribution -0.811 0.362 -0.135 0.898 sum -7.331 -10.320 0.187 12.661 Atomic orbital electron populations 1.21855 0.77461 1.03714 1.02115 1.45441 1.06449 1.05595 1.62667 1.20533 0.84109 0.88644 0.95589 1.18630 0.95394 0.87482 1.50432 0.88786 1.26820 0.94148 1.05653 0.92156 1.70125 1.02671 1.35804 1.31886 0.85002 0.79217 0.74783 0.79376 1.18751 1.19564 1.17631 1.71031 1.18661 1.09649 1.28017 1.23069 0.94844 0.92722 1.04413 1.19670 0.91015 0.86734 1.26180 1.18015 0.93217 0.89463 0.95915 1.21408 1.00044 0.92641 1.01292 1.21295 0.95690 0.95793 0.97391 1.21295 0.93485 0.99458 1.01700 1.20848 0.87365 0.94067 1.02927 1.98341 1.23587 1.93180 1.89386 1.21302 0.96812 0.95334 1.04335 0.91638 0.90120 0.89886 0.90921 0.82162 0.84956 0.81707 0.82812 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.35 9.22 127.77 1.18 4.53 16 2 N -0.51 -24.45 3.24 -530.32 -1.72 -26.17 16 3 C 0.35 19.62 7.41 133.41 0.99 20.61 16 4 C -0.48 -25.73 8.98 23.09 0.21 -25.52 16 5 H 0.09 4.55 6.99 -2.91 -0.02 4.53 16 6 C 0.03 1.70 5.50 85.35 0.47 2.17 16 7 N -0.78 -43.34 11.87 21.88 0.26 -43.08 16 8 Si 1.00 37.94 29.56 68.60 2.03 39.96 16 9 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 10 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 11 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 12 N -0.55 -32.29 9.32 -192.51 -1.79 -34.09 16 13 C 0.01 0.35 11.33 84.81 0.96 1.31 16 14 C -0.13 -5.78 6.80 40.82 0.28 -5.50 16 15 C 0.04 1.33 5.86 -20.08 -0.12 1.21 16 16 C -0.13 -4.09 9.59 22.59 0.22 -3.87 16 17 C -0.08 -1.95 10.03 22.23 0.22 -1.72 16 18 C -0.14 -3.29 9.83 22.39 0.22 -3.07 16 19 C -0.03 -0.71 6.31 22.28 0.14 -0.57 16 20 Cl -0.07 -1.80 28.95 -2.72 -0.08 -1.88 16 21 C -0.16 -5.26 8.47 22.61 0.19 -5.07 16 22 H 0.07 2.20 7.71 -2.38 -0.02 2.18 16 23 H 0.08 2.65 6.62 -2.39 -0.02 2.63 16 24 H 0.08 2.91 7.12 -2.39 -0.02 2.89 16 25 H 0.28 14.09 8.29 -92.71 -0.77 13.32 16 26 H 0.16 6.98 7.71 -2.91 -0.02 6.96 16 27 H 0.13 3.81 7.43 -2.91 -0.02 3.78 16 28 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.12 4.15 5.07 -2.91 -0.01 4.13 16 Total: -1.00 -66.53 276.63 4.83 -61.70 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.17 Total: 19.06 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 4.96 Total: -15.50 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -3.25 Total: -103.34 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.96 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -66.53 4.83 -61.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259990864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.204 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds