Wall clock time and date at job start Mon Mar 30 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31435 * 1 3 3 Si 1.86799 * 120.00409 * 2 1 4 4 H 1.48500 * 109.47396 * 240.00261 * 3 2 1 5 5 H 1.48498 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47252 * 120.00026 * 3 2 1 7 7 C 1.38791 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00206 * 189.82285 * 7 2 1 9 9 N 1.37402 * 120.00419 * 9.82126 * 7 2 1 10 10 C 1.37328 * 126.37222 * 17.95747 * 9 7 2 11 11 C 1.35875 * 106.91835 * 180.15308 * 10 9 7 12 12 C 1.48183 * 125.97147 * 179.84325 * 11 10 9 13 13 C 1.39396 * 120.15866 * 359.69834 * 12 11 10 14 14 C 1.37990 * 119.92049 * 179.97438 * 13 12 11 15 15 C 1.38405 * 120.24553 * 0.03960 * 14 13 12 16 16 C 1.38223 * 120.31984 * 359.95972 * 15 14 13 17 17 C 1.38533 * 120.07629 * 0.02562 * 16 15 14 18 18 O 1.35855 * 120.12664 * 179.72082 * 17 16 15 19 19 N 1.35707 * 108.05120 * 359.58457 * 11 10 9 20 20 C 1.31175 * 109.16766 * 0.26093 * 19 11 10 21 21 S 1.76199 * 125.69225 * 179.97438 * 20 19 11 22 22 H 0.97003 * 119.99856 * 359.97438 * 1 2 3 23 23 H 1.07998 * 126.53942 * 0.02562 * 10 9 7 24 24 H 1.07999 * 120.03834 * 0.04228 * 13 12 11 25 25 H 1.08002 * 119.87367 * 180.02562 * 14 13 12 26 26 H 1.08001 * 119.84210 * 179.97438 * 15 14 13 27 27 H 1.08005 * 119.96319 * 180.02562 * 16 15 14 28 28 H 0.96702 * 113.99641 * 90.00223 * 18 17 16 29 29 H 1.40999 * 99.99866 * 90.02963 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.1022 1.6964 -1.2125 5 1 1.2835 2.7464 0.0006 6 1 3.1022 1.6963 1.2125 7 6 2.0082 -1.2020 -0.0005 8 1 3.0764 -1.2090 0.1590 9 7 1.3364 -2.3831 -0.2040 10 6 0.0842 -2.5242 -0.7500 11 6 -0.1942 -3.8540 -0.7625 12 6 -1.4421 -4.4774 -1.2626 13 6 -2.4659 -3.6819 -1.7746 14 6 -3.6256 -4.2676 -2.2394 15 6 -3.7770 -5.6428 -2.1985 16 6 -2.7683 -6.4411 -1.6929 17 6 -1.5983 -5.8672 -1.2230 18 8 -0.6084 -6.6504 -0.7206 19 7 0.8727 -4.5119 -0.2423 20 6 1.7935 -3.6406 0.0947 21 16 3.3567 -4.0226 0.8123 22 1 -0.4850 0.8401 0.0004 23 1 -0.5577 -1.7295 -1.1005 24 1 -2.3511 -2.6086 -1.8085 25 1 -4.4182 -3.6506 -2.6363 26 1 -4.6876 -6.0943 -2.5637 27 1 -2.8923 -7.5136 -1.6642 28 1 0.0344 -6.9437 -1.3809 29 1 4.1319 -4.1741 -0.3557 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004220.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:05 Heat of formation + Delta-G solvation = 37.664372 kcal Electronic energy + Delta-G solvation = -16784.709398 eV Core-core repulsion = 13993.067269 eV Total energy + Delta-G solvation = -2791.642129 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46370 -38.80848 -35.89154 -34.24989 -31.75587 -30.50982 -29.20476 -27.43860 -25.41885 -22.58104 -22.03759 -20.45065 -19.40921 -18.47615 -17.51422 -16.41984 -15.85710 -15.27272 -14.81398 -14.65355 -14.34928 -13.93764 -13.48580 -12.96389 -12.76779 -12.47131 -12.09455 -11.87542 -11.45242 -11.40799 -11.15942 -10.99196 -10.76095 -10.48160 -9.97660 -9.83236 -8.94645 -8.72034 -8.32596 -8.14103 -7.47072 -7.07500 -6.77018 -4.71510 1.67541 1.80416 2.25280 2.76184 2.91848 2.95426 3.01994 3.58155 3.67559 3.93357 4.63808 4.69838 4.83241 4.93996 5.35523 5.39031 5.54322 5.83394 5.97862 6.25341 6.44074 6.56760 6.78930 6.81169 6.89604 6.94645 7.19997 7.21852 7.37404 7.80554 8.07727 8.39161 8.48018 8.98949 9.26845 10.00642 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.021094 B = 0.006991 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.092115 B = 4004.267386 C = 5282.790311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.048 3.952 3 Si 0.946 3.054 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.333 4.333 8 H 0.121 0.879 9 N -0.233 5.233 10 C -0.004 4.004 11 C -0.035 4.035 12 C 0.017 3.983 13 C -0.110 4.110 14 C -0.128 4.128 15 C -0.132 4.132 16 C -0.149 4.149 17 C 0.107 3.893 18 O -0.474 6.474 19 N -0.432 5.432 20 C 0.074 3.926 21 S -0.042 6.042 22 H 0.286 0.714 23 H 0.181 0.819 24 H 0.127 0.873 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.380 0.620 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 -3.136 -4.543 5.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.464 4.464 8 H 0.138 0.862 9 N 0.102 4.898 10 C -0.154 4.154 11 C -0.171 4.171 12 C 0.015 3.985 13 C -0.129 4.129 14 C -0.146 4.146 15 C -0.151 4.151 16 C -0.167 4.167 17 C 0.061 3.939 18 O -0.283 6.283 19 N -0.154 5.154 20 C -0.288 4.288 21 S 0.111 5.889 22 H 0.096 0.904 23 H 0.198 0.802 24 H 0.145 0.855 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.235 0.765 29 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -1.745 -3.840 -3.198 5.293 hybrid contribution -0.029 1.777 -1.637 2.416 sum -1.774 -2.063 -4.835 5.548 Atomic orbital electron populations 1.69896 1.06582 1.29732 1.39741 1.25649 0.95782 1.01070 0.93917 0.85667 0.79117 0.78323 0.79944 1.18927 1.19955 1.18667 1.20131 0.94658 0.81463 1.50136 0.86151 1.42044 1.11342 1.05513 1.30892 1.22907 0.90068 0.96836 1.05607 1.18860 0.95110 0.90490 1.12648 1.18427 0.92020 0.91966 0.96071 1.21077 0.92715 0.99994 0.99139 1.20937 0.97548 0.94746 1.01335 1.20843 0.98636 0.93727 1.01906 1.21264 0.94621 0.99841 1.01022 1.18491 0.89598 0.88738 0.97091 1.84835 1.38624 1.67763 1.37031 1.70833 0.99496 1.31038 1.13999 1.23611 1.01322 0.83450 1.20432 1.86081 1.00159 1.92065 1.10630 0.90351 0.80206 0.85539 0.86401 0.86611 0.86240 0.76501 0.97208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.31 10.82 55.49 0.60 -19.71 15 2 C 0.05 1.14 5.38 -17.52 -0.09 1.04 15 3 Si 0.95 17.87 29.56 -169.99 -5.03 12.84 15 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 7 C -0.33 -8.35 9.84 -14.85 -0.15 -8.50 15 8 H 0.12 2.84 7.60 -52.48 -0.40 2.44 15 9 N -0.23 -6.07 2.94 -61.60 -0.18 -6.25 15 10 C 0.00 -0.10 9.54 -15.94 -0.15 -0.25 15 11 C -0.03 -0.86 6.84 -82.92 -0.57 -1.42 15 12 C 0.02 0.36 5.89 -104.76 -0.62 -0.25 15 13 C -0.11 -2.01 9.56 -39.24 -0.38 -2.38 15 14 C -0.13 -1.94 10.03 -39.61 -0.40 -2.34 15 15 C -0.13 -1.92 10.03 -39.53 -0.40 -2.31 15 16 C -0.15 -2.38 9.98 -39.48 -0.39 -2.77 15 17 C 0.11 2.06 6.71 -38.85 -0.26 1.80 15 18 O -0.47 -9.19 11.79 -19.28 -0.23 -9.42 15 19 N -0.43 -10.91 9.80 -9.61 -0.09 -11.01 15 20 C 0.07 1.86 8.20 -87.91 -0.72 1.14 15 21 S -0.04 -0.87 25.67 -107.50 -2.76 -3.63 15 22 H 0.29 6.40 8.31 -40.82 -0.34 6.06 15 23 H 0.18 4.49 5.57 -52.49 -0.29 4.20 15 24 H 0.13 2.26 7.00 -52.49 -0.37 1.89 15 25 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 26 H 0.12 1.31 8.06 -52.49 -0.42 0.89 15 27 H 0.12 1.63 8.06 -52.48 -0.42 1.20 15 28 H 0.38 5.99 9.06 45.56 0.41 6.41 15 29 H 0.06 1.19 9.55 96.90 0.93 2.11 15 LS Contribution 275.18 15.07 4.15 4.15 Total: -1.00 -28.94 275.18 -7.78 -36.73 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -0.12 Total: 12.56 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -4.12 Total: -16.25 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.33 Total: -36.97 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.23 Total: -9.42 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -2.76 Total: -3.63 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.94 -7.78 -36.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004220.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.392 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds