Wall clock time and date at job start Mon Mar 30 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38566 * 119.99451 * 269.72003 * 10 9 7 12 12 O 1.35990 * 120.07924 * 0.02767 * 11 10 9 13 13 C 1.39160 * 119.84754 * 179.75001 * 11 10 9 14 14 O 1.35994 * 120.07329 * 180.27224 * 13 11 10 15 15 C 1.38568 * 119.85463 * 0.51140 * 13 11 10 16 16 C 1.38238 * 119.99803 * 359.76281 * 15 13 11 17 17 C 1.38233 * 119.99980 * 90.00014 * 10 9 7 18 18 C 1.50695 * 119.93054 * 359.97438 * 17 10 9 19 19 F 1.39906 * 109.47267 * 180.02562 * 18 17 10 20 20 F 1.39903 * 109.46957 * 299.99621 * 18 17 10 21 21 F 1.39893 * 109.47541 * 59.99557 * 18 17 10 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 0.96695 * 114.00302 * 89.99792 * 12 11 10 26 26 H 0.96698 * 114.00008 * 270.23665 * 14 13 11 27 27 H 1.07995 * 119.99562 * 179.74760 * 15 13 11 28 28 H 1.07997 * 119.92499 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6760 -4.1696 -1.2127 12 8 2.2313 -3.6521 -2.3891 13 6 3.5843 -5.2239 -1.2138 14 8 4.0291 -5.7390 -2.3912 15 6 4.0307 -5.7510 -0.0126 16 6 3.5776 -5.2263 1.1834 17 6 2.6792 -4.1753 1.1845 18 6 2.1889 -3.6069 2.4911 19 9 2.7791 -4.3013 3.5526 20 9 2.5350 -2.2536 2.5700 21 9 0.7980 -3.7374 2.5638 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.7743 -2.9286 -2.7308 26 1 3.4864 -6.4622 -2.7341 27 1 4.7325 -6.5719 -0.0108 28 1 3.9266 -5.6377 2.1189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260058993.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:45 Heat of formation + Delta-G solvation = -215.863375 kcal Electronic energy + Delta-G solvation = -20366.045552 eV Core-core repulsion = 16546.507273 eV Total energy + Delta-G solvation = -3819.538279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.49115 -47.09195 -46.75378 -39.95461 -36.88745 -36.28237 -33.36775 -31.28830 -29.76292 -27.36804 -25.06533 -23.50958 -21.74408 -20.91860 -18.35941 -17.95841 -17.85300 -17.70703 -16.67582 -16.36277 -15.75471 -15.20289 -14.52224 -14.27323 -13.89116 -13.76850 -13.44266 -13.17114 -13.05062 -13.02345 -12.97043 -12.47302 -12.11931 -11.68109 -11.48747 -11.25057 -11.01160 -10.81475 -10.51376 -10.17524 -9.66577 -9.44956 -8.49368 -8.44779 -8.14708 -6.07987 -4.12278 1.13904 1.55752 3.30110 3.30599 3.34929 3.37403 3.56675 4.20474 4.38800 4.43531 4.62160 4.79315 5.13115 5.19754 5.29485 5.37133 5.66662 5.84903 6.20718 6.23543 6.51133 6.52295 6.87606 7.44275 7.54753 7.66283 7.84388 8.15145 8.18623 8.89173 9.50889 11.02231 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.017275 B = 0.009820 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.459179 B = 2850.708350 C = 3896.830154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.032 3.968 10 C 0.004 3.996 11 C 0.076 3.924 12 O -0.481 6.481 13 C 0.105 3.895 14 O -0.494 6.494 15 C -0.163 4.163 16 C -0.070 4.070 17 C -0.188 4.188 18 C 0.512 3.488 19 F -0.193 7.193 20 F -0.153 7.153 21 F -0.176 7.176 22 H 0.264 0.736 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.394 0.606 26 H 0.390 0.610 27 H 0.134 0.866 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.076 -10.615 0.638 12.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.074 0.926 9 C -0.005 4.005 10 C 0.003 3.997 11 C 0.030 3.970 12 O -0.291 6.291 13 C 0.060 3.940 14 O -0.304 6.304 15 C -0.182 4.182 16 C -0.088 4.088 17 C -0.189 4.189 18 C 0.458 3.542 19 F -0.175 7.175 20 F -0.134 7.134 21 F -0.157 7.157 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.250 0.750 26 H 0.246 0.754 27 H 0.152 0.848 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.894 -10.465 0.778 12.036 hybrid contribution 0.411 1.011 0.069 1.094 sum 6.304 -9.454 0.847 11.395 Atomic orbital electron populations 1.69943 1.06014 1.27050 1.49646 1.24929 0.94834 0.99108 0.94899 0.86602 0.79573 0.82813 0.78758 1.20185 1.21174 1.20028 1.20768 0.92645 0.89197 1.52152 0.92611 1.18652 0.92627 0.88735 1.00439 1.20829 0.94849 0.94206 0.89818 1.18500 0.95713 0.96442 0.86313 1.84694 1.55195 1.54504 1.34734 1.19032 0.93600 0.95702 0.85714 1.84754 1.54570 1.54934 1.36120 1.21031 1.03538 1.02663 0.90920 1.20781 0.95068 0.94324 0.98648 1.19815 1.05041 1.01677 0.92411 1.18117 0.75324 0.76914 0.83828 1.93091 1.84205 1.79742 1.60423 1.93338 1.91592 1.32053 1.96405 1.93164 1.30346 1.95655 1.96527 0.92660 0.93753 0.93498 0.74976 0.75373 0.84838 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 15 2 C 0.06 1.79 5.46 -17.82 -0.10 1.70 15 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.51 -13.72 7.70 -34.44 -0.27 -13.99 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.03 0.81 4.19 -29.03 -0.12 0.69 15 10 C 0.00 0.08 5.04 -104.50 -0.53 -0.44 15 11 C 0.08 1.44 6.69 -39.12 -0.26 1.17 15 12 O -0.48 -8.96 12.33 -34.21 -0.42 -9.38 15 13 C 0.10 1.66 6.72 -39.12 -0.26 1.40 15 14 O -0.49 -6.71 13.29 -34.22 -0.45 -7.16 15 15 C -0.16 -2.32 9.98 -39.46 -0.39 -2.72 15 16 C -0.07 -1.08 9.42 -39.57 -0.37 -1.45 15 17 C -0.19 -3.59 5.37 -104.62 -0.56 -4.15 15 18 C 0.51 10.14 2.81 36.00 0.10 10.24 15 19 F -0.19 -3.30 15.96 2.25 0.04 -3.27 15 20 F -0.15 -3.45 15.26 2.25 0.03 -3.41 15 21 F -0.18 -3.66 15.33 2.25 0.03 -3.63 15 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 23 H 0.04 1.19 5.51 -51.93 -0.29 0.91 15 24 H 0.05 1.27 7.52 -51.93 -0.39 0.88 15 25 H 0.39 6.26 9.06 45.56 0.41 6.67 15 26 H 0.39 3.48 9.06 45.56 0.41 3.89 15 27 H 0.13 1.49 8.06 -52.49 -0.42 1.06 15 28 H 0.14 1.74 7.14 -52.49 -0.38 1.36 15 LS Contribution 262.11 15.07 3.95 3.95 Total: -1.00 -30.94 262.11 -4.06 -34.99 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -0.19 Total: 4.33 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.76 Total: -7.55 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.74 Total: -25.16 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.88 Total: -16.54 kcal Atomic # 9 Polarization: -10.41 SS G_CDS: 0.10 Total: -10.31 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.94 -4.06 -34.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058993.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.868 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds