Wall clock time and date at job start Mon Mar 30 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38566 * 119.99451 * 269.72003 * 10 9 7 12 12 O 1.35990 * 120.07924 * 0.02767 * 11 10 9 13 13 C 1.39160 * 119.84754 * 179.75001 * 11 10 9 14 14 O 1.35994 * 120.07329 * 180.27224 * 13 11 10 15 15 C 1.38568 * 119.85463 * 0.51140 * 13 11 10 16 16 C 1.38238 * 119.99803 * 359.76281 * 15 13 11 17 17 C 1.38233 * 119.99980 * 90.00014 * 10 9 7 18 18 C 1.50695 * 119.93054 * 359.97438 * 17 10 9 19 19 F 1.39906 * 109.47267 * 180.02562 * 18 17 10 20 20 F 1.39903 * 109.46957 * 299.99621 * 18 17 10 21 21 F 1.39893 * 109.47541 * 59.99557 * 18 17 10 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 0.96695 * 114.00302 * 89.99792 * 12 11 10 26 26 H 0.96698 * 114.00008 * 270.23665 * 14 13 11 27 27 H 1.07995 * 119.99562 * 179.74760 * 15 13 11 28 28 H 1.07997 * 119.92499 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6760 -4.1696 -1.2127 12 8 2.2313 -3.6521 -2.3891 13 6 3.5843 -5.2239 -1.2138 14 8 4.0291 -5.7390 -2.3912 15 6 4.0307 -5.7510 -0.0126 16 6 3.5776 -5.2263 1.1834 17 6 2.6792 -4.1753 1.1845 18 6 2.1889 -3.6069 2.4911 19 9 2.7791 -4.3013 3.5526 20 9 2.5350 -2.2536 2.5700 21 9 0.7980 -3.7374 2.5638 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.7743 -2.9286 -2.7308 26 1 3.4864 -6.4622 -2.7341 27 1 4.7325 -6.5719 -0.0108 28 1 3.9266 -5.6377 2.1189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260058993.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:45 Heat of formation + Delta-G solvation = -238.423906 kcal Electronic energy + Delta-G solvation = -20367.023851 eV Core-core repulsion = 16546.507273 eV Total energy + Delta-G solvation = -3820.516577 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.06024 -48.61488 -48.41630 -41.28382 -38.10775 -37.66947 -35.30988 -32.93708 -31.18140 -29.11125 -26.57781 -25.31374 -23.15854 -22.42213 -19.79988 -19.42810 -19.31363 -19.12909 -18.53080 -18.03183 -17.13641 -16.68588 -16.20929 -15.67081 -15.40942 -15.37615 -15.00102 -14.69628 -14.64269 -14.56524 -14.39620 -14.31451 -13.72801 -13.18739 -13.06170 -12.95902 -12.63316 -12.51657 -12.23120 -11.97560 -11.59097 -10.98856 -10.57722 -9.82069 -9.59513 -8.19124 -6.30076 -0.17503 0.21349 1.39512 1.42317 1.49614 1.79028 2.24334 2.42572 2.81503 3.09412 3.14200 3.22426 3.43329 3.58189 3.93197 4.05271 4.34993 4.59805 4.85244 4.87568 5.12040 5.19667 5.34147 5.55936 5.64832 5.72454 6.10421 6.64789 6.78702 6.88195 7.36834 8.91285 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.017275 B = 0.009820 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.459179 B = 2850.708350 C = 3896.830154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.045 3.955 10 C -0.031 4.031 11 C 0.057 3.943 12 O -0.494 6.494 13 C 0.121 3.879 14 O -0.493 6.493 15 C -0.140 4.140 16 C -0.058 4.058 17 C -0.202 4.202 18 C 0.509 3.491 19 F -0.175 7.175 20 F -0.175 7.175 21 F -0.188 7.188 22 H 0.264 0.736 23 H 0.018 0.982 24 H 0.013 0.987 25 H 0.401 0.599 26 H 0.414 0.586 27 H 0.180 0.820 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.607 -12.277 0.542 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.008 3.992 10 C -0.032 4.032 11 C 0.011 3.989 12 O -0.305 6.305 13 C 0.075 3.925 14 O -0.307 6.307 15 C -0.158 4.158 16 C -0.076 4.076 17 C -0.203 4.203 18 C 0.455 3.545 19 F -0.156 7.156 20 F -0.156 7.156 21 F -0.169 7.169 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.032 0.968 25 H 0.258 0.742 26 H 0.274 0.726 27 H 0.197 0.803 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.432 -12.155 0.666 14.808 hybrid contribution -0.329 1.377 0.074 1.418 sum 8.103 -10.777 0.741 13.504 Atomic orbital electron populations 1.70078 1.07647 1.27830 1.51233 1.25797 0.95596 1.02757 0.94709 0.85609 0.78401 0.78584 0.79167 1.18755 1.20870 1.19720 1.21032 0.92622 0.90295 1.50882 0.92708 1.18249 0.92995 0.90520 0.97428 1.20498 0.96107 0.94605 0.91987 1.18707 0.97073 0.97741 0.85361 1.84664 1.56100 1.54950 1.34834 1.18996 0.91916 0.94323 0.87262 1.84706 1.54776 1.55912 1.35279 1.21494 1.02532 1.02450 0.89306 1.21153 0.93191 0.92449 1.00769 1.19850 1.06461 1.03219 0.90804 1.18309 0.74908 0.76209 0.85040 1.93113 1.83741 1.79069 1.59672 1.93281 1.91723 1.34035 1.96602 1.93134 1.31532 1.95626 1.96658 0.92710 0.96435 0.96826 0.74198 0.72580 0.80268 0.81375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.15 13.29 21.45 0.28 -55.86 15 2 C 0.01 0.56 5.46 84.66 0.46 1.02 15 3 Si 0.96 44.27 29.54 68.60 2.03 46.29 15 4 H -0.26 -11.48 7.11 99.48 0.71 -10.78 15 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 7 C -0.51 -28.32 7.70 25.60 0.20 -28.12 15 8 H 0.05 2.98 7.74 -2.91 -0.02 2.95 15 9 C 0.04 2.38 4.19 29.10 0.12 2.50 15 10 C -0.03 -1.33 5.04 -19.79 -0.10 -1.43 15 11 C 0.06 2.10 6.69 22.57 0.15 2.25 15 12 O -0.49 -18.57 12.33 -79.57 -0.98 -19.56 15 13 C 0.12 3.43 6.72 22.57 0.15 3.58 15 14 O -0.49 -11.40 13.29 -79.62 -1.06 -12.45 15 15 C -0.14 -3.28 9.98 22.35 0.22 -3.05 15 16 C -0.06 -1.56 9.42 22.27 0.21 -1.35 15 17 C -0.20 -7.51 5.37 -19.86 -0.11 -7.62 15 18 C 0.51 20.16 2.81 71.23 0.20 20.36 15 19 F -0.17 -5.68 15.96 44.97 0.72 -4.96 15 20 F -0.18 -8.06 15.26 44.97 0.69 -7.38 15 21 F -0.19 -8.10 15.33 44.97 0.69 -7.41 15 22 H 0.26 15.11 8.31 -92.70 -0.77 14.34 15 23 H 0.02 1.00 5.51 -2.38 -0.01 0.99 15 24 H 0.01 0.78 7.52 -2.39 -0.02 0.76 15 25 H 0.40 12.97 9.06 -74.06 -0.67 12.30 15 26 H 0.41 5.61 9.06 -74.06 -0.67 4.93 15 27 H 0.18 2.67 8.06 -2.91 -0.02 2.65 15 28 H 0.17 3.45 7.14 -2.91 -0.02 3.42 15 Total: -1.00 -69.18 262.11 3.79 -65.40 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -0.09 Total: 7.79 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 1.51 Total: -11.86 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.86 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -2.04 Total: -32.01 kcal Atomic # 9 Polarization: -21.84 SS G_CDS: 2.09 Total: -19.75 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -69.18 3.79 -65.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058993.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.028 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds