Wall clock time and date at job start Mon Mar 30 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00302 * 2 1 4 4 H 1.48496 * 109.47188 * 270.00161 * 3 2 1 5 5 H 1.48498 * 109.47082 * 30.00109 * 3 2 1 6 6 H 1.48500 * 109.47034 * 150.00419 * 3 2 1 7 7 C 1.37881 * 119.99492 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00240 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99930 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.38285 * 119.92896 * 265.00060 * 10 9 7 12 12 C 1.38525 * 120.00101 * 179.72204 * 11 10 9 13 13 O 1.35987 * 120.07297 * 179.97438 * 12 11 10 14 14 C 1.39194 * 119.85250 * 359.97438 * 12 11 10 15 15 O 1.35990 * 120.07079 * 179.97438 * 14 12 11 16 16 C 1.38526 * 119.85413 * 0.02562 * 14 12 11 17 17 C 1.38211 * 119.92634 * 84.72500 * 10 9 7 18 18 C 1.50705 * 119.92693 * 0.27898 * 17 10 9 19 19 F 1.39899 * 109.47327 * 180.02562 * 18 17 10 20 20 F 1.39902 * 109.46950 * 299.99930 * 18 17 10 21 21 F 1.39907 * 109.47120 * 59.99893 * 18 17 10 22 22 H 0.97002 * 119.99270 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47160 * 59.99944 * 9 7 2 24 24 H 1.09006 * 109.47191 * 300.00154 * 9 7 2 25 25 H 1.08005 * 119.99781 * 359.69850 * 11 10 9 26 26 H 0.96701 * 113.99676 * 89.99956 * 13 12 11 27 27 H 0.96696 * 114.00146 * 90.00201 * 15 14 12 28 28 H 1.08006 * 119.99606 * 179.97438 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1943 -0.0011 10 6 4.0137 -2.6151 -0.0010 11 6 4.3426 -3.2305 1.1929 12 6 4.7989 -4.5384 1.1953 13 8 5.1232 -5.1448 2.3684 14 6 4.9248 -5.2305 -0.0058 15 8 5.3728 -6.5145 -0.0087 16 6 4.5936 -4.6081 -1.1983 17 6 4.1392 -3.3021 -1.1936 18 6 3.7795 -2.6267 -2.4919 19 9 3.9870 -3.5147 -3.5528 20 9 2.4342 -2.2439 -2.4613 21 9 4.5826 -1.4945 -2.6668 22 1 -0.4849 0.8401 -0.0004 23 1 3.8751 -0.6807 0.8888 24 1 3.8745 -0.6802 -0.8912 25 1 4.2440 -2.6912 2.1235 26 1 4.3863 -5.6099 2.7876 27 1 4.6719 -7.1758 0.0705 28 1 4.6908 -5.1429 -2.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075905.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:07 Heat of formation + Delta-G solvation = -212.125905 kcal Electronic energy + Delta-G solvation = -20215.158313 eV Core-core repulsion = 16395.782102 eV Total energy + Delta-G solvation = -3819.376211 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.54546 -47.16147 -46.78561 -40.10226 -36.99445 -36.88848 -33.19745 -31.21853 -30.59676 -27.61057 -25.15830 -23.25867 -22.03361 -20.85389 -18.80774 -18.03323 -17.97183 -17.74097 -16.92782 -16.42756 -15.89842 -15.40035 -14.67469 -14.27479 -13.97445 -13.83165 -13.49968 -13.40060 -13.20436 -13.01221 -12.98185 -12.64895 -12.27635 -11.98684 -11.90387 -11.53251 -11.15601 -10.53337 -10.48044 -10.11630 -10.03629 -9.48345 -8.78639 -8.63425 -8.18260 -6.13848 -4.13567 1.07016 1.39532 3.22893 3.26222 3.33529 3.35584 3.51011 4.09445 4.14957 4.36307 4.39002 4.67607 5.04966 5.07728 5.21740 5.36631 5.56187 5.78301 5.94812 6.15821 6.38146 6.42592 6.70670 6.86978 7.11229 7.40319 7.53272 7.81177 8.36544 8.88127 9.45065 10.98617 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.008550 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.835333 B = 3274.024463 C = 4081.855751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.870 3.130 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.509 4.509 8 H 0.077 0.923 9 C -0.006 4.006 10 C 0.032 3.968 11 C -0.136 4.136 12 C 0.112 3.888 13 O -0.490 6.490 14 C 0.048 3.952 15 O -0.486 6.486 16 C -0.084 4.084 17 C -0.181 4.181 18 C 0.510 3.490 19 F -0.192 7.192 20 F -0.144 7.144 21 F -0.180 7.180 22 H 0.265 0.735 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.142 0.858 26 H 0.389 0.611 27 H 0.382 0.618 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.666 -9.331 -0.478 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.697 3.303 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.547 4.547 8 H 0.095 0.905 9 C -0.043 4.043 10 C 0.031 3.969 11 C -0.154 4.154 12 C 0.067 3.933 13 O -0.300 6.300 14 C 0.003 3.997 15 O -0.295 6.295 16 C -0.103 4.103 17 C -0.183 4.183 18 C 0.455 3.545 19 F -0.174 7.174 20 F -0.125 7.125 21 F -0.161 7.161 22 H 0.075 0.925 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.160 0.840 26 H 0.245 0.755 27 H 0.237 0.763 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.601 -8.697 -0.676 12.251 hybrid contribution -0.656 0.507 -0.051 0.830 sum 7.945 -8.191 -0.728 11.434 Atomic orbital electron populations 1.69875 1.06172 1.27063 1.50035 1.24881 0.94678 0.98774 0.94229 0.86922 0.80475 0.83970 0.78977 1.19868 1.21070 1.18861 1.20694 0.87023 0.94957 1.52019 0.90487 1.19192 0.98559 0.87341 0.99167 1.20025 0.88641 0.98102 0.90110 1.21261 1.00794 0.94229 0.99144 1.18912 0.97272 0.92112 0.85048 1.84852 1.39059 1.71590 1.34472 1.18371 1.03657 0.86144 0.91482 1.84928 1.35831 1.12890 1.95829 1.21037 0.96772 0.93867 0.98586 1.19750 1.09506 0.95942 0.93060 1.18142 0.76309 0.76416 0.83602 1.93098 1.95005 1.68862 1.60390 1.93412 1.31702 1.91050 1.96324 1.93142 1.73985 1.53151 1.95821 0.92471 0.94283 0.94329 0.83975 0.75504 0.76346 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.96 55.43 0.77 -25.72 15 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 15 3 Si 0.87 20.89 27.47 -169.99 -4.67 16.23 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 15 7 C -0.51 -13.63 7.71 -34.44 -0.27 -13.90 15 8 H 0.08 2.25 7.98 -52.49 -0.42 1.83 15 9 C -0.01 -0.13 3.52 -29.04 -0.10 -0.23 15 10 C 0.03 0.63 5.04 -104.62 -0.53 0.10 15 11 C -0.14 -2.35 9.61 -39.46 -0.38 -2.73 15 12 C 0.11 1.72 6.72 -39.12 -0.26 1.46 15 13 O -0.49 -6.46 13.29 -34.18 -0.45 -6.91 15 14 C 0.05 0.73 6.72 -39.12 -0.26 0.46 15 15 O -0.49 -6.18 13.29 -34.19 -0.45 -6.64 15 16 C -0.08 -1.33 9.36 -39.46 -0.37 -1.70 15 17 C -0.18 -3.36 5.37 -104.61 -0.56 -3.92 15 18 C 0.51 9.85 2.83 36.01 0.10 9.96 15 19 F -0.19 -3.29 15.97 2.25 0.04 -3.25 15 20 F -0.14 -3.24 14.86 2.25 0.03 -3.20 15 21 F -0.18 -3.54 15.33 2.25 0.03 -3.50 15 22 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 23 H 0.04 0.87 7.11 -51.93 -0.37 0.50 15 24 H 0.04 0.90 5.17 -51.93 -0.27 0.63 15 25 H 0.14 2.31 8.06 -52.48 -0.42 1.89 15 26 H 0.39 3.11 9.06 45.56 0.41 3.53 15 27 H 0.38 2.86 9.06 45.56 0.41 3.28 15 28 H 0.14 1.95 7.15 -52.48 -0.38 1.57 15 LS Contribution 259.18 15.07 3.91 3.91 Total: -1.00 -31.74 259.18 -3.72 -35.46 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -0.20 Total: 2.09 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.73 Total: -8.46 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.77 Total: -25.72 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.91 Total: -13.55 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 0.10 Total: -9.96 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.74 -3.72 -35.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075905.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.666 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds