Wall clock time and date at job start Mon Mar 30 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00302 * 2 1 4 4 H 1.48496 * 109.47188 * 270.00161 * 3 2 1 5 5 H 1.48498 * 109.47082 * 30.00109 * 3 2 1 6 6 H 1.48500 * 109.47034 * 150.00419 * 3 2 1 7 7 C 1.37881 * 119.99492 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00240 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99930 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.38285 * 119.92896 * 265.00060 * 10 9 7 12 12 C 1.38525 * 120.00101 * 179.72204 * 11 10 9 13 13 O 1.35987 * 120.07297 * 179.97438 * 12 11 10 14 14 C 1.39194 * 119.85250 * 359.97438 * 12 11 10 15 15 O 1.35990 * 120.07079 * 179.97438 * 14 12 11 16 16 C 1.38526 * 119.85413 * 0.02562 * 14 12 11 17 17 C 1.38211 * 119.92634 * 84.72500 * 10 9 7 18 18 C 1.50705 * 119.92693 * 0.27898 * 17 10 9 19 19 F 1.39899 * 109.47327 * 180.02562 * 18 17 10 20 20 F 1.39902 * 109.46950 * 299.99930 * 18 17 10 21 21 F 1.39907 * 109.47120 * 59.99893 * 18 17 10 22 22 H 0.97002 * 119.99270 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47160 * 59.99944 * 9 7 2 24 24 H 1.09006 * 109.47191 * 300.00154 * 9 7 2 25 25 H 1.08005 * 119.99781 * 359.69850 * 11 10 9 26 26 H 0.96701 * 113.99676 * 89.99956 * 13 12 11 27 27 H 0.96696 * 114.00146 * 90.00201 * 15 14 12 28 28 H 1.08006 * 119.99606 * 179.97438 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1943 -0.0011 10 6 4.0137 -2.6151 -0.0010 11 6 4.3426 -3.2305 1.1929 12 6 4.7989 -4.5384 1.1953 13 8 5.1232 -5.1448 2.3684 14 6 4.9248 -5.2305 -0.0058 15 8 5.3728 -6.5145 -0.0087 16 6 4.5936 -4.6081 -1.1983 17 6 4.1392 -3.3021 -1.1936 18 6 3.7795 -2.6267 -2.4919 19 9 3.9870 -3.5147 -3.5528 20 9 2.4342 -2.2439 -2.4613 21 9 4.5826 -1.4945 -2.6668 22 1 -0.4849 0.8401 -0.0004 23 1 3.8751 -0.6807 0.8888 24 1 3.8745 -0.6802 -0.8912 25 1 4.2440 -2.6912 2.1235 26 1 4.3863 -5.6099 2.7876 27 1 4.6719 -7.1758 0.0705 28 1 4.6908 -5.1429 -2.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260075905.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:06 Heat of formation + Delta-G solvation = -235.816174 kcal Electronic energy + Delta-G solvation = -20216.185600 eV Core-core repulsion = 16395.782102 eV Total energy + Delta-G solvation = -3820.403498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.07939 -48.64554 -48.41919 -41.32245 -38.25143 -37.94235 -35.11466 -32.87788 -31.93087 -29.23485 -26.61466 -24.89906 -23.44683 -22.31798 -20.00003 -19.47854 -19.34255 -19.21376 -18.99013 -17.72816 -17.19623 -16.56673 -16.33908 -15.78285 -15.42326 -15.37942 -15.00087 -14.90816 -14.66957 -14.61168 -14.59545 -14.30224 -13.90864 -13.57179 -13.19882 -13.00670 -12.74833 -12.29885 -12.03661 -11.88572 -11.56792 -11.23493 -10.75447 -10.05419 -9.53225 -8.26691 -6.29257 -0.21374 0.12049 1.36414 1.38245 1.47188 1.75558 2.22919 2.35796 2.74956 3.04104 3.06831 3.10100 3.31083 3.54413 3.81465 3.95902 4.28167 4.51682 4.67236 4.87938 4.92382 4.99068 5.10293 5.42187 5.53079 5.58285 6.24273 6.58371 6.73364 6.90097 7.32011 8.89296 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.008550 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.835333 B = 3274.024463 C = 4081.855751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.018 3.982 3 Si 0.928 3.072 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.243 1.243 7 C -0.499 4.499 8 H 0.040 0.960 9 C -0.001 4.001 10 C 0.001 3.999 11 C -0.141 4.141 12 C 0.124 3.876 13 O -0.491 6.491 14 C 0.067 3.933 15 O -0.487 6.487 16 C -0.081 4.081 17 C -0.193 4.193 18 C 0.507 3.493 19 F -0.178 7.178 20 F -0.170 7.170 21 F -0.184 7.184 22 H 0.266 0.734 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.148 0.852 26 H 0.414 0.586 27 H 0.410 0.590 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.607 -10.557 0.054 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.179 4.179 3 Si 0.752 3.248 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.166 1.166 7 C -0.537 4.537 8 H 0.058 0.942 9 C -0.038 4.038 10 C 0.001 3.999 11 C -0.160 4.160 12 C 0.078 3.922 13 O -0.305 6.305 14 C 0.021 3.979 15 O -0.300 6.300 16 C -0.099 4.099 17 C -0.195 4.195 18 C 0.453 3.547 19 F -0.160 7.160 20 F -0.151 7.151 21 F -0.165 7.165 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.165 0.835 26 H 0.274 0.726 27 H 0.268 0.732 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 10.542 -9.968 -0.126 14.509 hybrid contribution -1.227 0.643 -0.192 1.399 sum 9.315 -9.325 -0.318 13.184 Atomic orbital electron populations 1.70018 1.07967 1.27957 1.52384 1.25716 0.95390 1.02519 0.94312 0.85983 0.80078 0.79614 0.79141 1.19804 1.20690 1.16583 1.20843 0.89331 0.93295 1.50202 0.94217 1.19005 0.95743 0.90043 0.99037 1.19796 0.91398 0.97011 0.91720 1.21310 1.01006 0.95226 0.98414 1.18825 0.95852 0.91405 0.86103 1.84795 1.40469 1.71593 1.33648 1.18333 1.01623 0.87084 0.90837 1.84867 1.37168 1.12293 1.95642 1.21212 0.96039 0.92675 0.99986 1.19730 1.10711 0.97069 0.91942 1.18307 0.75143 0.76558 0.84658 1.93113 1.94805 1.68201 1.59849 1.93356 1.33783 1.91409 1.96528 1.93124 1.73872 1.53593 1.95918 0.92488 0.93624 0.94767 0.83461 0.72553 0.73156 0.82078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.63 13.96 21.45 0.30 -57.33 15 2 C 0.02 1.04 5.47 84.66 0.46 1.50 15 3 Si 0.93 43.18 27.47 68.60 1.88 45.07 15 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 15 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 6 H -0.24 -10.34 6.54 99.48 0.65 -9.69 15 7 C -0.50 -27.33 7.71 25.60 0.20 -27.13 15 8 H 0.04 2.41 7.98 -2.91 -0.02 2.39 15 9 C 0.00 -0.06 3.52 29.10 0.10 0.05 15 10 C 0.00 0.05 5.04 -19.86 -0.10 -0.05 15 11 C -0.14 -4.67 9.61 22.35 0.21 -4.45 15 12 C 0.12 3.45 6.72 22.57 0.15 3.60 15 13 O -0.49 -11.13 13.29 -79.55 -1.06 -12.19 15 14 C 0.07 1.77 6.72 22.57 0.15 1.92 15 15 O -0.49 -10.24 13.29 -79.59 -1.06 -11.30 15 16 C -0.08 -2.35 9.36 22.35 0.21 -2.14 15 17 C -0.19 -6.98 5.37 -19.86 -0.11 -7.09 15 18 C 0.51 19.49 2.83 71.24 0.20 19.69 15 19 F -0.18 -5.90 15.97 44.97 0.72 -5.18 15 20 F -0.17 -7.81 14.86 44.97 0.67 -7.15 15 21 F -0.18 -7.18 15.33 44.97 0.69 -6.49 15 22 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 23 H 0.05 1.99 7.11 -2.39 -0.02 1.97 15 24 H 0.03 1.58 5.17 -2.38 -0.01 1.57 15 25 H 0.15 4.59 8.06 -2.91 -0.02 4.56 15 26 H 0.41 4.98 9.06 -74.06 -0.67 4.31 15 27 H 0.41 4.18 9.06 -74.06 -0.67 3.51 15 28 H 0.16 3.95 7.15 -2.91 -0.02 3.93 15 Total: -1.00 -69.06 259.18 3.48 -65.58 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -0.15 Total: 3.09 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 1.48 Total: -14.10 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.30 Total: -57.33 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -2.12 Total: -23.49 kcal Atomic # 9 Polarization: -20.90 SS G_CDS: 2.08 Total: -18.82 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.07 kcal Total: -69.06 3.48 -65.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075905.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.235 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds