Wall clock time and date at job start Mon Mar 30 2020 06:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37641 * 126.61812 * 2 1 4 4 C 1.39602 * 125.69565 * 359.97438 * 3 2 1 5 5 H 1.08003 * 120.00147 * 359.97438 * 4 3 2 6 6 C 1.40237 * 119.99759 * 180.27318 * 4 3 2 7 7 N 1.30685 * 120.00325 * 359.72540 * 6 4 3 8 8 Si 1.86807 * 119.99819 * 179.72421 * 6 4 3 9 9 H 1.48505 * 109.47079 * 59.99994 * 8 6 4 10 10 H 1.48496 * 109.47168 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46885 * 300.00082 * 8 6 4 12 12 N 1.33190 * 108.60860 * 180.24027 * 3 2 1 13 13 C 1.32214 * 109.68465 * 359.56327 * 12 3 2 14 14 C 1.37505 * 126.61352 * 179.97438 * 2 1 3 15 15 C 1.47272 * 126.68844 * 0.02562 * 14 2 1 16 16 C 1.39951 * 120.17998 * 48.39939 * 15 14 2 17 17 C 1.37808 * 119.83206 * 179.97438 * 16 15 14 18 18 C 1.38497 * 120.21199 * 359.97438 * 17 16 15 19 19 C 1.38383 * 120.36916 * 0.02562 * 18 17 16 20 20 C 1.38017 * 120.16509 * 359.69345 * 19 18 17 21 21 Cl 1.73602 * 120.11141 * 180.29770 * 20 19 18 22 22 H 1.08993 * 109.47114 * 90.30136 * 1 2 3 23 23 H 1.09003 * 109.47287 * 210.30715 * 1 2 3 24 24 H 1.09002 * 109.46703 * 330.30570 * 1 2 3 25 25 H 0.96997 * 120.00197 * 179.97438 * 7 6 4 26 26 H 1.07998 * 125.84418 * 180.17095 * 13 12 3 27 27 H 1.08005 * 120.08073 * 0.02562 * 16 15 14 28 28 H 1.08001 * 119.88976 * 179.97438 * 17 16 15 29 29 H 1.07992 * 119.81843 * 180.02562 * 18 17 16 30 30 H 1.08002 * 119.91570 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2860 1.1047 0.0000 4 6 1.8619 2.4348 -0.0005 5 1 0.8067 2.6651 -0.0014 6 6 2.8060 3.4717 -0.0062 7 7 4.0828 3.1931 -0.0057 8 14 2.2384 5.2515 -0.0147 9 1 1.4218 5.5164 1.1970 10 1 3.4219 6.1484 -0.0205 11 1 1.4203 5.5044 -1.2280 12 7 3.5526 0.6930 -0.0053 13 6 3.5913 -0.6286 0.0008 14 6 2.2851 -1.1037 0.0005 15 6 1.8619 -2.5143 0.0006 16 6 0.8907 -2.9576 -0.9044 17 6 0.5005 -4.2793 -0.8984 18 6 1.0666 -5.1690 -0.0006 19 6 2.0276 -4.7399 0.8980 20 6 2.4341 -3.4210 0.9015 21 17 3.6453 -2.8859 2.0242 22 1 -0.3633 -0.0054 -1.0276 23 1 -0.3634 -0.8872 0.5186 24 1 -0.3633 0.8927 0.5091 25 1 4.7357 3.9103 -0.0100 26 1 4.4849 -1.2351 0.0011 27 1 0.4489 -2.2657 -1.6062 28 1 -0.2492 -4.6222 -1.5960 29 1 0.7563 -6.2034 -0.0017 30 1 2.4639 -5.4400 1.5952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260131556.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:41 Heat of formation + Delta-G solvation = 70.114333 kcal Electronic energy + Delta-G solvation = -16795.952853 eV Core-core repulsion = 14003.674153 eV Total energy + Delta-G solvation = -2792.278699 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.98378 -38.40415 -35.84670 -33.57193 -32.47901 -31.28295 -30.36194 -28.12512 -25.97678 -24.78513 -22.20823 -22.02862 -19.92093 -19.03079 -16.91953 -16.47528 -15.61064 -15.17476 -14.90673 -14.23183 -14.02140 -13.55646 -13.18504 -13.05820 -12.61633 -12.37671 -11.80915 -11.69091 -11.50323 -11.23144 -11.06997 -11.02682 -10.99433 -10.59802 -10.23809 -10.16804 -9.34433 -8.73917 -8.41291 -8.02575 -7.85286 -6.88349 -6.53211 -4.34476 1.46313 1.57114 2.71643 2.99080 3.09493 3.10794 3.44248 3.90539 4.04648 4.38140 4.63624 5.12388 5.20307 5.32442 5.52057 5.64982 5.69704 5.73232 6.00249 6.07187 6.14218 6.25427 6.40860 6.57157 6.63699 6.75932 7.00742 7.13353 7.21391 7.52892 7.99557 8.11241 8.42728 8.81698 9.19650 10.08551 10.37974 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.033098 B = 0.005863 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.776744 B = 4774.941857 C = 5362.614620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.505 5.505 3 C 0.388 3.612 4 C -0.452 4.452 5 H 0.081 0.919 6 C 0.081 3.919 7 N -0.731 5.731 8 Si 0.914 3.086 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.266 1.266 12 N -0.511 5.511 13 C 0.059 3.941 14 C -0.152 4.152 15 C 0.060 3.940 16 C -0.128 4.128 17 C -0.111 4.111 18 C -0.145 4.145 19 C -0.105 4.105 20 C -0.047 4.047 21 Cl -0.067 7.067 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.276 0.724 26 H 0.139 0.861 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 -9.672 0.197 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.196 5.196 3 C 0.150 3.850 4 C -0.490 4.490 5 H 0.099 0.901 6 C -0.145 4.145 7 N -0.355 5.355 8 Si 0.738 3.262 9 H -0.191 1.191 10 H -0.202 1.202 11 H -0.191 1.191 12 N -0.230 5.230 13 C -0.100 4.100 14 C -0.260 4.260 15 C 0.057 3.943 16 C -0.147 4.147 17 C -0.129 4.129 18 C -0.164 4.164 19 C -0.124 4.124 20 C -0.075 4.075 21 Cl -0.038 7.038 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.156 0.844 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.961 -9.012 0.293 10.291 hybrid contribution -0.921 0.181 0.045 0.940 sum -5.882 -8.831 0.338 10.616 Atomic orbital electron populations 1.21425 0.80002 1.02092 1.00737 1.45143 1.04597 1.05869 1.64010 1.20148 0.83583 0.87321 0.93958 1.18144 0.94340 0.87122 1.49396 0.90132 1.25764 0.94398 1.00882 0.93430 1.69994 1.01146 1.34087 1.30239 0.86297 0.79023 0.81204 0.79667 1.19072 1.20187 1.19085 1.71147 1.17194 1.07752 1.26893 1.22650 0.92985 0.93001 1.01413 1.18908 0.91573 0.84824 1.30738 1.17911 0.93409 0.90889 0.92065 1.21288 0.98962 0.95611 0.98792 1.21023 0.99692 0.93421 0.98751 1.20914 0.98634 0.99462 0.97400 1.20848 0.98105 0.93682 0.99737 1.21077 0.97056 0.94144 0.95182 1.98351 1.54266 1.90714 1.60455 0.93405 0.92324 0.90918 0.91298 0.84365 0.86085 0.86328 0.86123 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.90 10.01 59.85 0.60 2.50 16 2 N -0.51 -11.98 3.24 -118.97 -0.39 -12.36 16 3 C 0.39 10.60 7.41 -155.48 -1.15 9.44 16 4 C -0.45 -11.90 8.98 -38.32 -0.34 -12.24 16 5 H 0.08 1.94 7.12 -52.48 -0.37 1.57 16 6 C 0.08 2.06 5.50 -17.29 -0.10 1.96 16 7 N -0.73 -19.88 11.87 55.56 0.66 -19.22 16 8 Si 0.91 18.54 29.56 -169.99 -5.03 13.52 16 9 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 10 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 12 N -0.51 -14.58 9.32 -12.19 -0.11 -14.69 16 13 C 0.06 1.50 10.42 -17.11 -0.18 1.32 16 14 C -0.15 -3.50 6.07 -81.37 -0.49 -4.00 16 15 C 0.06 1.16 5.47 -104.91 -0.57 0.59 16 16 C -0.13 -2.12 8.93 -39.10 -0.35 -2.47 16 17 C -0.11 -1.51 10.03 -39.64 -0.40 -1.91 16 18 C -0.15 -1.89 10.04 -39.43 -0.40 -2.29 16 19 C -0.10 -1.53 9.82 -39.61 -0.39 -1.92 16 20 C -0.05 -0.83 6.35 -38.99 -0.25 -1.08 16 21 Cl -0.07 -1.21 26.51 -51.86 -1.37 -2.59 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.99 7.65 -51.93 -0.40 0.60 16 24 H 0.07 1.30 7.34 -51.93 -0.38 0.92 16 25 H 0.28 6.82 8.29 -40.82 -0.34 6.48 16 26 H 0.14 3.25 7.63 -52.49 -0.40 2.84 16 27 H 0.12 1.97 7.78 -52.48 -0.41 1.56 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 278.96 15.07 4.20 4.20 Total: -1.00 -30.19 278.96 -8.84 -39.03 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -2.79 Total: 2.19 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -4.02 Total: -10.08 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.16 Total: -46.27 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.37 Total: -2.59 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.19 -8.84 -39.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260131556.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.147 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds