Wall clock time and date at job start Mon Mar 30 2020 06:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37641 * 126.61812 * 2 1 4 4 C 1.39602 * 125.69565 * 359.97438 * 3 2 1 5 5 H 1.08003 * 120.00147 * 359.97438 * 4 3 2 6 6 C 1.40237 * 119.99759 * 180.27318 * 4 3 2 7 7 N 1.30685 * 120.00325 * 359.72540 * 6 4 3 8 8 Si 1.86807 * 119.99819 * 179.72421 * 6 4 3 9 9 H 1.48505 * 109.47079 * 59.99994 * 8 6 4 10 10 H 1.48496 * 109.47168 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46885 * 300.00082 * 8 6 4 12 12 N 1.33190 * 108.60860 * 180.24027 * 3 2 1 13 13 C 1.32214 * 109.68465 * 359.56327 * 12 3 2 14 14 C 1.37505 * 126.61352 * 179.97438 * 2 1 3 15 15 C 1.47272 * 126.68844 * 0.02562 * 14 2 1 16 16 C 1.39951 * 120.17998 * 48.39939 * 15 14 2 17 17 C 1.37808 * 119.83206 * 179.97438 * 16 15 14 18 18 C 1.38497 * 120.21199 * 359.97438 * 17 16 15 19 19 C 1.38383 * 120.36916 * 0.02562 * 18 17 16 20 20 C 1.38017 * 120.16509 * 359.69345 * 19 18 17 21 21 Cl 1.73602 * 120.11141 * 180.29770 * 20 19 18 22 22 H 1.08993 * 109.47114 * 90.30136 * 1 2 3 23 23 H 1.09003 * 109.47287 * 210.30715 * 1 2 3 24 24 H 1.09002 * 109.46703 * 330.30570 * 1 2 3 25 25 H 0.96997 * 120.00197 * 179.97438 * 7 6 4 26 26 H 1.07998 * 125.84418 * 180.17095 * 13 12 3 27 27 H 1.08005 * 120.08073 * 0.02562 * 16 15 14 28 28 H 1.08001 * 119.88976 * 179.97438 * 17 16 15 29 29 H 1.07992 * 119.81843 * 180.02562 * 18 17 16 30 30 H 1.08002 * 119.91570 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2860 1.1047 0.0000 4 6 1.8619 2.4348 -0.0005 5 1 0.8067 2.6651 -0.0014 6 6 2.8060 3.4717 -0.0062 7 7 4.0828 3.1931 -0.0057 8 14 2.2384 5.2515 -0.0147 9 1 1.4218 5.5164 1.1970 10 1 3.4219 6.1484 -0.0205 11 1 1.4203 5.5044 -1.2280 12 7 3.5526 0.6930 -0.0053 13 6 3.5913 -0.6286 0.0008 14 6 2.2851 -1.1037 0.0005 15 6 1.8619 -2.5143 0.0006 16 6 0.8907 -2.9576 -0.9044 17 6 0.5005 -4.2793 -0.8984 18 6 1.0666 -5.1690 -0.0006 19 6 2.0276 -4.7399 0.8980 20 6 2.4341 -3.4210 0.9015 21 17 3.6453 -2.8859 2.0242 22 1 -0.3633 -0.0054 -1.0276 23 1 -0.3634 -0.8872 0.5186 24 1 -0.3633 0.8927 0.5091 25 1 4.7357 3.9103 -0.0100 26 1 4.4849 -1.2351 0.0011 27 1 0.4489 -2.2657 -1.6062 28 1 -0.2492 -4.6222 -1.5960 29 1 0.7563 -6.2034 -0.0017 30 1 2.4639 -5.4400 1.5952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260131556.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:41 Heat of formation + Delta-G solvation = 53.311573 kcal Electronic energy + Delta-G solvation = -16796.681475 eV Core-core repulsion = 14003.674153 eV Total energy + Delta-G solvation = -2793.007322 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.77804 -39.73026 -37.22247 -35.40424 -34.25665 -32.74047 -31.59952 -29.89093 -27.64011 -26.51351 -23.52435 -23.44033 -21.78618 -20.66227 -18.67604 -17.89689 -17.33332 -16.60198 -16.31839 -15.79251 -15.60082 -14.90550 -14.65621 -14.51573 -14.21180 -13.92615 -13.46210 -13.34418 -13.06742 -12.79372 -12.47546 -12.44722 -12.31603 -12.24482 -11.91572 -11.56812 -11.11937 -10.20683 -9.88795 -9.76741 -9.59383 -8.70855 -8.36932 -6.27212 0.15359 0.34583 1.36142 1.37752 1.43451 1.57019 1.77297 2.23987 2.57380 2.66817 2.91634 3.59638 3.95292 3.97702 4.17627 4.19661 4.47792 4.49777 4.51565 4.53959 4.69032 4.79681 4.97241 5.13902 5.26604 5.38349 5.48042 5.54091 5.70136 5.96319 6.15997 6.23652 6.58800 6.94311 7.34115 8.20948 8.57694 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.033098 B = 0.005863 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.776744 B = 4774.941857 C = 5362.614620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.506 5.506 3 C 0.350 3.650 4 C -0.485 4.485 5 H 0.093 0.907 6 C 0.032 3.968 7 N -0.786 5.786 8 Si 0.996 3.004 9 H -0.258 1.258 10 H -0.273 1.273 11 H -0.256 1.256 12 N -0.556 5.556 13 C 0.008 3.992 14 C -0.118 4.118 15 C 0.015 3.985 16 C -0.126 4.126 17 C -0.102 4.102 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.056 4.056 21 Cl -0.083 7.083 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.278 0.722 26 H 0.139 0.861 27 H 0.121 0.879 28 H 0.159 0.841 29 H 0.167 0.833 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.701 -12.223 -0.216 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.196 5.196 3 C 0.108 3.892 4 C -0.523 4.523 5 H 0.111 0.889 6 C -0.188 4.188 7 N -0.411 5.411 8 Si 0.816 3.184 9 H -0.182 1.182 10 H -0.198 1.198 11 H -0.181 1.181 12 N -0.276 5.276 13 C -0.148 4.148 14 C -0.228 4.228 15 C 0.013 3.987 16 C -0.145 4.145 17 C -0.120 4.120 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.083 4.083 21 Cl -0.054 7.054 22 H 0.087 0.913 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.156 0.844 27 H 0.139 0.861 28 H 0.177 0.823 29 H 0.185 0.815 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.844 -11.619 -0.121 14.020 hybrid contribution -0.185 0.489 0.161 0.547 sum -8.029 -11.131 0.040 13.724 Atomic orbital electron populations 1.21696 0.77188 1.03275 1.02415 1.45479 1.06476 1.05302 1.62301 1.20468 0.84006 0.88585 0.96098 1.18536 0.95225 0.87474 1.51107 0.88875 1.26815 0.94140 1.05603 0.92235 1.70150 1.02678 1.35607 1.32668 0.85076 0.78532 0.74782 0.80051 1.18194 1.19811 1.18055 1.70981 1.18844 1.09472 1.28353 1.22711 0.94365 0.92451 1.05283 1.19427 0.90803 0.86580 1.26032 1.17980 0.96455 0.89150 0.95097 1.21392 0.97735 0.97390 0.97967 1.21466 0.99717 0.91775 0.99021 1.21521 0.95877 1.01419 0.94699 1.21238 0.98287 0.92445 1.00559 1.21321 0.96707 0.95290 0.95002 1.98351 1.55054 1.91071 1.60969 0.91338 0.90396 0.90427 0.91193 0.84361 0.86130 0.82307 0.81526 0.83167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.52 10.01 127.77 1.28 4.80 16 2 N -0.51 -24.50 3.24 -530.31 -1.72 -26.22 16 3 C 0.35 20.04 7.41 133.40 0.99 21.03 16 4 C -0.48 -26.55 8.98 23.09 0.21 -26.35 16 5 H 0.09 4.59 7.12 -2.91 -0.02 4.57 16 6 C 0.03 1.70 5.50 85.35 0.47 2.17 16 7 N -0.79 -45.28 11.87 21.88 0.26 -45.02 16 8 Si 1.00 39.10 29.56 68.60 2.03 41.13 16 9 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 10 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 11 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 12 N -0.56 -33.83 9.32 -192.49 -1.79 -35.62 16 13 C 0.01 0.43 10.42 84.82 0.88 1.31 16 14 C -0.12 -5.55 6.07 40.81 0.25 -5.30 16 15 C 0.02 0.58 5.47 -20.05 -0.11 0.47 16 16 C -0.13 -3.79 8.93 22.58 0.20 -3.59 16 17 C -0.10 -2.20 10.03 22.23 0.22 -1.98 16 18 C -0.12 -2.30 10.04 22.37 0.22 -2.08 16 19 C -0.11 -2.66 9.82 22.25 0.22 -2.44 16 20 C -0.06 -1.89 6.35 22.65 0.14 -1.74 16 21 Cl -0.08 -3.05 26.51 -2.72 -0.07 -3.12 16 22 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.08 2.49 7.65 -2.39 -0.02 2.48 16 24 H 0.08 2.73 7.34 -2.39 -0.02 2.71 16 25 H 0.28 14.59 8.29 -92.71 -0.77 13.82 16 26 H 0.14 7.02 7.63 -2.91 -0.02 7.00 16 27 H 0.12 3.61 7.78 -2.91 -0.02 3.58 16 28 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 29 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -71.42 278.96 4.84 -66.58 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 1.16 Total: 15.96 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 4.98 Total: -13.68 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -3.25 Total: -106.86 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.07 Total: -3.12 kcal Total: -71.42 4.84 -66.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260131556.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.888 kcal (2) G-P(sol) polarization free energy of solvation -71.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds