Wall clock time and date at job start Mon Mar 30 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37646 * 126.61729 * 2 1 4 4 C 1.39603 * 125.69738 * 0.03665 * 3 2 1 5 5 H 1.08010 * 119.99676 * 0.24817 * 4 3 2 6 6 C 1.40234 * 120.00288 * 180.24014 * 4 3 2 7 7 N 1.30688 * 119.99824 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00162 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47131 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46970 * 120.00293 * 8 6 4 11 11 H 1.48494 * 109.47553 * 240.00607 * 8 6 4 12 12 N 1.33188 * 108.60462 * 180.26762 * 3 2 1 13 13 C 1.32213 * 109.68635 * 359.77441 * 12 3 2 14 14 C 1.37503 * 126.61758 * 179.88598 * 2 1 3 15 15 C 1.47278 * 126.68733 * 0.02562 * 14 2 1 16 16 C 1.39952 * 120.15729 * 339.47997 * 15 14 2 17 17 C 1.37810 * 119.83589 * 180.02562 * 16 15 14 18 18 C 1.38593 * 120.15669 * 359.97191 * 17 16 15 19 19 Cl 1.73608 * 119.83227 * 180.02562 * 18 17 16 20 20 C 1.38583 * 120.33216 * 0.02770 * 18 17 16 21 21 C 1.37809 * 120.16127 * 0.02562 * 20 18 17 22 22 H 1.09002 * 109.47435 * 264.16431 * 1 2 3 23 23 H 1.08996 * 109.47252 * 24.16455 * 1 2 3 24 24 H 1.09002 * 109.47012 * 144.16392 * 1 2 3 25 25 H 0.96999 * 120.00235 * 179.97438 * 7 6 4 26 26 H 1.08003 * 125.84081 * 179.97438 * 13 12 3 27 27 H 1.08001 * 120.08763 * 0.27201 * 16 15 14 28 28 H 1.08000 * 119.92193 * 179.97438 * 17 16 15 29 29 H 1.07997 * 119.92028 * 179.97438 * 20 18 17 30 30 H 1.08000 * 120.08083 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2859 1.1048 0.0000 4 6 1.8618 2.4349 0.0007 5 1 0.8066 2.6652 0.0054 6 6 2.8058 3.4719 -0.0045 7 7 4.0826 3.1932 -0.0105 8 14 2.2383 5.2515 -0.0042 9 1 0.7540 5.2978 0.0026 10 1 2.7600 5.9372 1.2053 11 1 2.7496 5.9344 -1.2197 12 7 3.5525 0.6930 -0.0059 13 6 3.5911 -0.6286 -0.0048 14 6 2.2851 -1.1036 0.0022 15 6 1.8620 -2.5143 0.0045 16 6 0.5743 -2.8615 0.4288 17 6 0.1855 -4.1836 0.4287 18 6 1.0661 -5.1682 0.0093 19 17 0.5673 -6.8311 0.0120 20 6 2.3427 -4.8321 -0.4123 21 6 2.7459 -3.5143 -0.4166 22 1 -0.3634 -0.1045 1.0223 23 1 -0.3633 0.9376 -0.4207 24 1 -0.3633 -0.8331 -0.6017 25 1 4.7356 3.9104 -0.0144 26 1 4.4848 -1.2352 -0.0091 27 1 -0.1144 -2.0948 0.7517 28 1 -0.8077 -4.4531 0.7563 29 1 3.0236 -5.6047 -0.7374 30 1 3.7410 -3.2537 -0.7458 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260138663.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:43 Heat of formation + Delta-G solvation = 67.238794 kcal Electronic energy + Delta-G solvation = -16465.859412 eV Core-core repulsion = 13673.456020 eV Total energy + Delta-G solvation = -2792.403392 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.16309 -38.40747 -36.13430 -33.69822 -32.76512 -31.10416 -30.58140 -28.14935 -26.20549 -24.78105 -22.50489 -21.91624 -19.94804 -19.12574 -17.00532 -16.58399 -15.73965 -15.31868 -14.73808 -14.35341 -14.23857 -13.32929 -13.15065 -13.10043 -12.81287 -12.56896 -11.96419 -11.87193 -11.63534 -11.37939 -11.16301 -11.12985 -10.92702 -10.70587 -10.44270 -10.24127 -9.49415 -8.72492 -8.64425 -8.16761 -8.08657 -6.89457 -6.68025 -4.46243 1.37628 1.69081 2.45315 2.89310 3.02802 3.06717 3.33253 3.81745 4.13037 4.24232 4.58462 5.14086 5.17633 5.37147 5.49330 5.59275 5.71100 5.77667 5.91475 6.03738 6.11684 6.20558 6.28053 6.58680 6.63483 6.70147 6.92906 7.07604 7.23461 7.40168 7.86914 7.98035 8.26349 8.66577 9.03258 9.89847 10.22804 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.057339 B = 0.004190 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.204688 B = 6681.725408 C = 7129.544451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.511 5.511 3 C 0.389 3.611 4 C -0.445 4.445 5 H 0.085 0.915 6 C 0.079 3.921 7 N -0.727 5.727 8 Si 0.917 3.083 9 H -0.261 1.261 10 H -0.272 1.272 11 H -0.272 1.272 12 N -0.509 5.509 13 C 0.056 3.944 14 C -0.147 4.147 15 C 0.067 3.933 16 C -0.157 4.157 17 C -0.092 4.092 18 C -0.085 4.085 19 Cl -0.098 7.098 20 C -0.091 4.091 21 C -0.134 4.134 22 H 0.050 0.950 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.277 0.723 26 H 0.144 0.856 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 -8.410 -0.138 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.202 5.202 3 C 0.152 3.848 4 C -0.483 4.483 5 H 0.103 0.897 6 C -0.148 4.148 7 N -0.349 5.349 8 Si 0.741 3.259 9 H -0.185 1.185 10 H -0.197 1.197 11 H -0.197 1.197 12 N -0.227 5.227 13 C -0.105 4.105 14 C -0.255 4.255 15 C 0.065 3.935 16 C -0.176 4.176 17 C -0.111 4.111 18 C -0.111 4.111 19 Cl -0.069 7.069 20 C -0.110 4.110 21 C -0.153 4.153 22 H 0.068 0.932 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.162 0.838 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.817 -7.927 -0.146 9.277 hybrid contribution -1.052 0.002 0.054 1.053 sum -5.869 -7.926 -0.092 9.862 Atomic orbital electron populations 1.21611 0.79900 1.02595 1.00729 1.45108 1.04763 1.05985 1.64333 1.20209 0.83598 0.87502 0.93492 1.18313 0.94635 0.87073 1.48278 0.89734 1.25819 0.94392 1.01228 0.93321 1.70002 1.01249 1.34241 1.29446 0.86125 0.79995 0.81123 0.78686 1.18507 1.19712 1.19712 1.71181 1.17367 1.07886 1.26306 1.22781 0.93345 0.93277 1.01113 1.19144 0.91405 0.85382 1.29544 1.18128 0.92375 0.90640 0.92389 1.21342 0.97051 0.95265 1.03920 1.20770 0.98742 0.91983 0.99569 1.20690 0.96148 0.84019 1.10264 1.98311 1.91674 1.19289 1.97660 1.20783 0.94136 0.96580 0.99485 1.20991 1.00303 0.91107 1.02937 0.93156 0.90603 0.91773 0.91154 0.83831 0.85599 0.86050 0.85787 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 9.21 59.84 0.55 2.26 16 2 N -0.51 -11.68 3.24 -118.98 -0.39 -12.07 16 3 C 0.39 10.23 7.41 -155.47 -1.15 9.08 16 4 C -0.44 -11.29 8.97 -38.32 -0.34 -11.63 16 5 H 0.08 1.96 7.00 -52.48 -0.37 1.59 16 6 C 0.08 1.92 5.50 -17.29 -0.10 1.83 16 7 N -0.73 -18.97 11.87 55.56 0.66 -18.31 16 8 Si 0.92 17.80 29.56 -169.99 -5.03 12.77 16 9 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 10 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 11 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 12 N -0.51 -13.92 9.32 -12.20 -0.11 -14.03 16 13 C 0.06 1.34 11.33 -17.11 -0.19 1.15 16 14 C -0.15 -3.26 6.80 -81.37 -0.55 -3.81 16 15 C 0.07 1.26 5.86 -104.94 -0.62 0.64 16 16 C -0.16 -2.63 8.69 -39.10 -0.34 -2.97 16 17 C -0.09 -1.38 9.81 -39.61 -0.39 -1.77 16 18 C -0.08 -1.26 6.33 -39.32 -0.25 -1.51 16 19 Cl -0.10 -1.29 28.95 -51.86 -1.50 -2.79 16 20 C -0.09 -1.35 9.81 -39.61 -0.39 -1.74 16 21 C -0.13 -2.23 9.59 -39.10 -0.37 -2.60 16 22 H 0.05 0.81 7.70 -51.93 -0.40 0.41 16 23 H 0.08 1.29 7.12 -51.93 -0.37 0.92 16 24 H 0.06 1.03 6.63 -51.93 -0.34 0.68 16 25 H 0.28 6.52 8.29 -40.82 -0.34 6.18 16 26 H 0.14 2.96 7.71 -52.48 -0.40 2.56 16 27 H 0.13 2.01 5.08 -52.49 -0.27 1.74 16 28 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.13 1.98 7.44 -52.49 -0.39 1.59 16 LS Contribution 276.65 15.07 4.17 4.17 Total: -1.00 -28.69 276.65 -8.86 -37.55 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -2.52 Total: 3.78 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -4.14 Total: -11.08 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.16 Total: -44.41 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.69 -8.86 -37.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260138663.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.790 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds