Wall clock time and date at job start Mon Mar 30 2020 06:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37646 * 126.61729 * 2 1 4 4 C 1.39603 * 125.69738 * 0.03665 * 3 2 1 5 5 H 1.08010 * 119.99676 * 0.24817 * 4 3 2 6 6 C 1.40234 * 120.00288 * 180.24014 * 4 3 2 7 7 N 1.30688 * 119.99824 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00162 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47131 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46970 * 120.00293 * 8 6 4 11 11 H 1.48494 * 109.47553 * 240.00607 * 8 6 4 12 12 N 1.33188 * 108.60462 * 180.26762 * 3 2 1 13 13 C 1.32213 * 109.68635 * 359.77441 * 12 3 2 14 14 C 1.37503 * 126.61758 * 179.88598 * 2 1 3 15 15 C 1.47278 * 126.68733 * 0.02562 * 14 2 1 16 16 C 1.39952 * 120.15729 * 339.47997 * 15 14 2 17 17 C 1.37810 * 119.83589 * 180.02562 * 16 15 14 18 18 C 1.38593 * 120.15669 * 359.97191 * 17 16 15 19 19 Cl 1.73608 * 119.83227 * 180.02562 * 18 17 16 20 20 C 1.38583 * 120.33216 * 0.02770 * 18 17 16 21 21 C 1.37809 * 120.16127 * 0.02562 * 20 18 17 22 22 H 1.09002 * 109.47435 * 264.16431 * 1 2 3 23 23 H 1.08996 * 109.47252 * 24.16455 * 1 2 3 24 24 H 1.09002 * 109.47012 * 144.16392 * 1 2 3 25 25 H 0.96999 * 120.00235 * 179.97438 * 7 6 4 26 26 H 1.08003 * 125.84081 * 179.97438 * 13 12 3 27 27 H 1.08001 * 120.08763 * 0.27201 * 16 15 14 28 28 H 1.08000 * 119.92193 * 179.97438 * 17 16 15 29 29 H 1.07997 * 119.92028 * 179.97438 * 20 18 17 30 30 H 1.08000 * 120.08083 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2859 1.1048 0.0000 4 6 1.8618 2.4349 0.0007 5 1 0.8066 2.6652 0.0054 6 6 2.8058 3.4719 -0.0045 7 7 4.0826 3.1932 -0.0105 8 14 2.2383 5.2515 -0.0042 9 1 0.7540 5.2978 0.0026 10 1 2.7600 5.9372 1.2053 11 1 2.7496 5.9344 -1.2197 12 7 3.5525 0.6930 -0.0059 13 6 3.5911 -0.6286 -0.0048 14 6 2.2851 -1.1036 0.0022 15 6 1.8620 -2.5143 0.0045 16 6 0.5743 -2.8615 0.4288 17 6 0.1855 -4.1836 0.4287 18 6 1.0661 -5.1682 0.0093 19 17 0.5673 -6.8311 0.0120 20 6 2.3427 -4.8321 -0.4123 21 6 2.7459 -3.5143 -0.4166 22 1 -0.3634 -0.1045 1.0223 23 1 -0.3633 0.9376 -0.4207 24 1 -0.3633 -0.8331 -0.6017 25 1 4.7356 3.9104 -0.0144 26 1 4.4848 -1.2352 -0.0091 27 1 -0.1144 -2.0948 0.7517 28 1 -0.8077 -4.4531 0.7563 29 1 3.0236 -5.6047 -0.7374 30 1 3.7410 -3.2537 -0.7458 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260138663.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:42 Heat of formation + Delta-G solvation = 52.413097 kcal Electronic energy + Delta-G solvation = -16466.502302 eV Core-core repulsion = 13673.456020 eV Total energy + Delta-G solvation = -2793.046283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.87566 -39.76147 -37.31933 -35.43840 -34.43546 -32.57739 -31.89909 -29.83915 -27.79086 -26.45454 -23.86241 -23.34916 -21.70669 -20.71110 -18.70161 -17.97036 -17.39210 -16.77128 -16.14449 -15.91130 -15.76434 -14.70234 -14.58026 -14.43998 -14.34563 -14.06957 -13.52706 -13.35027 -13.22654 -12.88084 -12.47547 -12.46203 -12.39671 -12.26802 -11.83745 -11.62656 -11.18648 -10.18549 -9.98327 -9.92581 -9.79925 -8.60630 -8.42438 -6.29600 -0.00261 0.41461 1.23968 1.35418 1.44331 1.60189 1.76085 2.22130 2.55005 2.59468 2.98779 3.54176 3.89181 3.99331 4.04011 4.17361 4.40198 4.45057 4.50555 4.52946 4.67180 4.77956 4.95392 5.08333 5.23785 5.31605 5.32601 5.51831 5.71734 5.89326 6.13455 6.20963 6.52648 6.89044 7.27458 8.12735 8.52367 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.057339 B = 0.004190 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.204688 B = 6681.725408 C = 7129.544451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.511 5.511 3 C 0.351 3.649 4 C -0.480 4.480 5 H 0.096 0.904 6 C 0.032 3.968 7 N -0.781 5.781 8 Si 0.997 3.003 9 H -0.250 1.250 10 H -0.269 1.269 11 H -0.269 1.269 12 N -0.555 5.555 13 C 0.004 3.996 14 C -0.124 4.124 15 C 0.031 3.969 16 C -0.149 4.149 17 C -0.093 4.093 18 C -0.072 4.072 19 Cl -0.074 7.074 20 C -0.092 4.092 21 C -0.127 4.127 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.280 0.720 26 H 0.159 0.841 27 H 0.134 0.866 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 -10.619 -0.091 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.201 5.201 3 C 0.111 3.889 4 C -0.519 4.519 5 H 0.114 0.886 6 C -0.189 4.189 7 N -0.406 5.406 8 Si 0.817 3.183 9 H -0.173 1.173 10 H -0.194 1.194 11 H -0.194 1.194 12 N -0.275 5.275 13 C -0.153 4.153 14 C -0.234 4.234 15 C 0.029 3.971 16 C -0.168 4.168 17 C -0.111 4.111 18 C -0.098 4.098 19 Cl -0.045 7.045 20 C -0.110 4.110 21 C -0.146 4.146 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.176 0.824 27 H 0.152 0.848 28 H 0.168 0.832 29 H 0.169 0.831 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.079 -10.204 -0.099 12.419 hybrid contribution -0.509 0.120 0.038 0.525 sum -7.589 -10.084 -0.061 12.620 Atomic orbital electron populations 1.21908 0.77198 1.03845 1.02419 1.45446 1.06590 1.05416 1.62608 1.20535 0.84094 0.88700 0.95574 1.18673 0.95441 0.87458 1.50297 0.88631 1.26832 0.94158 1.05701 0.92171 1.70138 1.02708 1.35719 1.32000 0.84946 0.79887 0.74925 0.78564 1.17268 1.19395 1.19380 1.71023 1.18828 1.09670 1.27951 1.23075 0.94982 0.92758 1.04505 1.19668 0.90948 0.86869 1.25956 1.18214 0.94182 0.89145 0.95527 1.21486 0.96056 0.96525 1.02685 1.21048 1.00065 0.91036 0.98949 1.20978 0.95930 0.85349 1.07579 1.98336 1.91424 1.17312 1.97413 1.21058 0.94750 0.96326 0.98882 1.21168 1.00245 0.91528 1.01686 0.91211 0.90073 0.89688 0.90969 0.82406 0.84819 0.83215 0.83075 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.06 9.21 127.77 1.18 4.23 16 2 N -0.51 -23.72 3.24 -530.34 -1.72 -25.44 16 3 C 0.35 19.34 7.41 133.40 0.99 20.33 16 4 C -0.48 -25.35 8.97 23.08 0.21 -25.14 16 5 H 0.10 4.55 7.00 -2.91 -0.02 4.53 16 6 C 0.03 1.64 5.50 85.35 0.47 2.10 16 7 N -0.78 -43.18 11.87 21.88 0.26 -42.93 16 8 Si 1.00 37.56 29.56 68.60 2.03 39.59 16 9 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 10 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 11 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 12 N -0.55 -32.16 9.32 -192.50 -1.79 -33.96 16 13 C 0.00 0.22 11.33 84.81 0.96 1.18 16 14 C -0.12 -5.59 6.80 40.81 0.28 -5.31 16 15 C 0.03 1.13 5.86 -20.07 -0.12 1.01 16 16 C -0.15 -4.56 8.69 22.58 0.20 -4.36 16 17 C -0.09 -2.38 9.81 22.25 0.22 -2.16 16 18 C -0.07 -1.82 6.33 22.44 0.14 -1.68 16 19 Cl -0.07 -1.61 28.95 -2.72 -0.08 -1.69 16 20 C -0.09 -2.39 9.81 22.25 0.22 -2.17 16 21 C -0.13 -3.96 9.59 22.58 0.22 -3.74 16 22 H 0.07 2.13 7.70 -2.39 -0.02 2.11 16 23 H 0.08 2.70 7.12 -2.39 -0.02 2.69 16 24 H 0.08 2.54 6.63 -2.39 -0.02 2.52 16 25 H 0.28 13.99 8.29 -92.71 -0.77 13.22 16 26 H 0.16 6.91 7.71 -2.91 -0.02 6.89 16 27 H 0.13 3.85 5.08 -2.91 -0.01 3.84 16 28 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.13 3.98 7.44 -2.91 -0.02 3.96 16 Total: -1.00 -65.41 276.65 4.83 -60.58 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 1.17 Total: 19.56 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 4.95 Total: -15.72 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -3.25 Total: -102.32 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -65.41 4.83 -60.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260138663.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.993 kcal (2) G-P(sol) polarization free energy of solvation -65.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds