Wall clock time and date at job start Mon Mar 30 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00054 * 2 1 4 4 H 1.48500 * 109.46911 * 270.00070 * 3 2 1 5 5 H 1.48496 * 109.46811 * 30.00266 * 3 2 1 6 6 H 1.48497 * 109.47061 * 150.00061 * 3 2 1 7 7 C 1.37878 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99845 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47010 * 60.00270 * 9 7 2 11 11 C 1.50707 * 109.47033 * 180.02562 * 9 7 2 12 12 C 1.38164 * 120.03065 * 115.63187 * 11 9 7 13 13 C 1.38240 * 120.05754 * 179.97438 * 12 11 9 14 14 C 1.38292 * 120.11167 * 359.95652 * 13 12 11 15 15 C 1.38120 * 120.05515 * 0.02562 * 14 13 12 16 16 C 1.38715 * 120.02718 * 295.60927 * 11 9 7 17 17 O 1.35903 * 120.05418 * 0.04808 * 16 11 9 18 18 C 1.52995 * 109.47189 * 299.99951 * 9 7 2 19 19 F 1.39895 * 109.47414 * 306.64761 * 18 9 7 20 20 F 1.39899 * 109.47228 * 66.65190 * 18 9 7 21 21 F 1.39907 * 109.47049 * 186.64719 * 18 9 7 22 22 H 0.96998 * 120.00208 * 359.97438 * 1 2 3 23 23 H 0.96701 * 113.99824 * 59.99684 * 10 9 7 24 24 H 1.08004 * 119.96923 * 359.97438 * 12 11 9 25 25 H 1.07998 * 119.94355 * 179.97438 * 13 12 11 26 26 H 1.07993 * 119.96777 * 179.74548 * 14 13 12 27 27 H 1.07996 * 120.02954 * 179.97438 * 15 14 13 28 28 H 0.96699 * 114.00082 * 95.14716 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.4290 -2.5746 -1.1671 11 6 2.2304 -3.6446 -0.0005 12 6 2.2864 -4.5064 1.0779 13 6 3.1842 -5.5577 1.0783 14 6 4.0276 -5.7501 -0.0006 15 6 3.9753 -4.8915 -1.0813 16 6 3.0760 -3.8349 -1.0835 17 8 3.0232 -2.9882 -2.1453 18 6 0.3719 -2.5805 1.2490 19 9 1.1553 -2.3553 2.3859 20 9 -0.6335 -1.6104 1.1758 21 9 -0.2102 -3.8503 1.3278 22 1 -0.4850 0.8400 0.0004 23 1 0.9209 -2.5290 -1.9984 24 1 1.6282 -4.3587 1.9214 25 1 3.2267 -6.2299 1.9224 26 1 4.7309 -6.5696 0.0039 27 1 4.6344 -5.0419 -1.9235 28 1 3.6688 -2.2694 -2.1076 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260142288.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:31 Heat of formation + Delta-G solvation = -190.753906 kcal Electronic energy + Delta-G solvation = -21285.286846 eV Core-core repulsion = 17466.837395 eV Total energy + Delta-G solvation = -3818.449451 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.66320 -46.22136 -45.74707 -39.43301 -36.08498 -35.78101 -32.43044 -31.07489 -29.32023 -27.44635 -24.75955 -22.72402 -21.90055 -20.33815 -18.06800 -17.79729 -16.94972 -16.55976 -15.95006 -15.53762 -15.11244 -14.82206 -14.64861 -13.96831 -13.60783 -13.24638 -12.95883 -12.71307 -12.59870 -12.21030 -12.17973 -11.96914 -11.66646 -11.58830 -11.22993 -11.13818 -10.97284 -10.76718 -10.33433 -10.23274 -9.24267 -8.86339 -8.57032 -8.34011 -8.01087 -6.13537 -4.47828 1.73512 1.80438 3.17795 3.25785 3.27974 4.07646 4.22465 4.24058 4.77303 4.95670 5.21225 5.28635 5.33757 5.42960 5.67659 5.80803 5.97066 6.12601 6.28884 6.48314 6.66405 6.77351 6.91276 7.08276 7.28803 7.57552 7.68514 8.22552 8.48107 9.04073 9.26647 10.75088 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.021671 B = 0.011125 C = 0.008884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.720408 B = 2516.284322 C = 3151.090569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.267 3.733 10 O -0.545 6.545 11 C -0.102 4.102 12 C -0.109 4.109 13 C -0.133 4.133 14 C -0.119 4.119 15 C -0.157 4.157 16 C 0.126 3.874 17 O -0.491 6.491 18 C 0.455 3.545 19 F -0.193 7.193 20 F -0.133 7.133 21 F -0.217 7.217 22 H 0.265 0.735 23 H 0.376 0.624 24 H 0.130 0.870 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.050 -5.981 -0.053 8.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.133 4.133 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.606 4.606 8 H 0.087 0.913 9 C 0.226 3.774 10 O -0.353 6.353 11 C -0.104 4.104 12 C -0.127 4.127 13 C -0.151 4.151 14 C -0.137 4.137 15 C -0.175 4.175 16 C 0.081 3.919 17 O -0.302 6.302 18 C 0.400 3.600 19 F -0.175 7.175 20 F -0.113 7.113 21 F -0.199 7.199 22 H 0.076 0.924 23 H 0.226 0.774 24 H 0.147 0.853 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 4.899 -6.262 0.225 7.953 hybrid contribution 1.163 1.198 0.069 1.671 sum 6.062 -5.064 0.295 7.904 Atomic orbital electron populations 1.70430 1.05656 1.26795 1.42226 1.25142 0.95014 0.99716 0.93458 0.86426 0.79845 0.82440 0.78360 1.20157 1.20832 1.19644 1.21072 0.93248 0.88498 1.57770 0.91317 1.18163 0.84095 0.91776 0.83386 1.86358 1.37400 1.96323 1.15196 1.21110 0.98919 0.97089 0.93233 1.21460 0.98533 0.94228 0.98490 1.21048 0.96892 0.98500 0.98640 1.20867 0.99635 0.99363 0.93876 1.21328 1.00001 0.96998 0.99222 1.18092 0.95175 0.91672 0.86923 1.84635 1.62422 1.42032 1.41130 1.21256 0.80473 0.72371 0.85899 1.93018 1.75537 1.94530 1.54415 1.93370 1.61482 1.60569 1.95913 1.93022 1.86345 1.43642 1.96915 0.92428 0.77426 0.85258 0.86365 0.86396 0.86008 0.75103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.62 9.16 55.43 0.51 -22.12 15 2 C 0.08 2.02 5.22 -17.82 -0.09 1.92 15 3 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 15 4 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.57 -14.46 6.94 -34.44 -0.24 -14.70 15 8 H 0.07 1.68 7.71 -52.49 -0.40 1.28 15 9 C 0.27 6.63 0.36 -92.92 -0.03 6.59 15 10 O -0.55 -14.07 12.18 -46.59 -0.57 -14.64 15 11 C -0.10 -2.22 4.79 -104.47 -0.50 -2.72 15 12 C -0.11 -2.18 8.13 -39.61 -0.32 -2.50 15 13 C -0.13 -2.17 10.04 -39.56 -0.40 -2.57 15 14 C -0.12 -1.78 10.04 -39.60 -0.40 -2.18 15 15 C -0.16 -2.51 9.99 -39.43 -0.39 -2.90 15 16 C 0.13 2.39 6.38 -39.22 -0.25 2.14 15 17 O -0.49 -8.67 10.49 -30.79 -0.32 -9.00 15 18 C 0.45 11.64 2.02 37.15 0.08 11.72 15 19 F -0.19 -4.76 15.11 2.25 0.03 -4.73 15 20 F -0.13 -3.71 13.11 2.25 0.03 -3.68 15 21 F -0.22 -5.24 14.83 2.25 0.03 -5.21 15 22 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 23 H 0.38 8.86 6.88 45.56 0.31 9.17 15 24 H 0.13 2.66 4.66 -52.48 -0.24 2.42 15 25 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 26 H 0.12 1.36 8.06 -52.49 -0.42 0.94 15 27 H 0.12 1.62 8.06 -52.49 -0.42 1.20 15 28 H 0.39 5.67 9.06 45.56 0.41 6.08 15 LS Contribution 250.43 15.07 3.77 3.77 Total: -1.00 -29.57 250.43 -4.41 -33.98 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -0.33 Total: 11.86 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.55 Total: -5.20 kcal Atomic # 7 Polarization: -22.62 SS G_CDS: 0.51 Total: -22.12 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.89 Total: -23.63 kcal Atomic # 9 Polarization: -13.71 SS G_CDS: 0.10 Total: -13.61 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.57 -4.41 -33.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142288.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.774 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds